hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196191954.fa
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Query sequence: gi|196191954|gb|EDX86918.1|
Accession: [none]
Description: Putative Ig domain family [Synechococcus sp. PCC 7335]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 177.3 4.3e-50 4
PKD PKD domain 35.7 1.9e-10 4
Cadherin Cadherin domain 21.7 1.6e-05 5
TSP_3 Thrombospondin type 3 repeat 20.9 4.4e-05 6
Big_2 Bacterial Ig-like domain (group 2) 17.8 0.00018 4
F5_F8_type_C F5/8 type C domain 14.0 0.0018 1
Binary_toxB Clostridial binary toxin B/anthrax to 6.2 0.074 2
DAG1 Dystroglycan (Dystrophin-associated g 5.5 0.088 1
Ad_cyc_g-alpha Adenylate cyclase G-alpha binding dom 8.5 0.12 1
WDYHV Uncharacterized conserved protein 5.6 0.24 1
Flagellin_IN Flagellin hook IN motif 5.8 0.91 2
Gmad1 Lipoprotein LpqB beta-propeller domai 3.8 0.95 1
DUF508 Domain of unknown function (DUF508) 2.7 1.3 1
Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar b 2.9 1.3 1
DUF543 Domain of unknown function (DUF543) 4.0 1.7 1
FlgD Flagellar hook capping protein 2.9 1.9 1
Lectin_legB Legume lectin domain 2.0 2.3 1
DUF2454 Protein of unknown function (DUF2454) 2.0 2.6 2
GBS_Bsp-like GBS Bsp-like repeat 2.9 2.7 1
Patatin Patatin-like phospholipase 2.3 2.9 1
DUF1901 Domain of unkown function (DUF1901) 3.1 3 1
Trehalose_PPase Trehalose-phosphatase 1.7 3.6 1
SASP_gamma Small, acid-soluble spore protein, ga 2.1 3.6 1
Fil_haemagg Haemagluttinin repeat 3.0 4 2
CoA_trans Coenzyme A transferase 1.7 4.1 1
Clathrin_propel Clathrin propeller repeat 4.2 4.8 1
Peptidase_M30 Peptidase M30 0.6 4.8 1
Big_3 Bacterial Ig-like domain (group 3) 3.4 4.9 2
Orthopox_F14 Orthopoxvirus F14 protein 1.8 5.1 1
DUF2334 Uncharacterized protein conserved in -0.3 6.3 1
YceI YceI-like domain 1.3 6.3 1
Plectin Plectin repeat 2.9 6.5 1
AOX Alternative oxidase -0.6 6.7 1
RCC1 Regulator of chromosome condensation 2.2 6.7 1
Patched Patched family -1.1 6.7 1
Ceramidase_alk Neutral/alkaline non-lysosomal cerami -0.4 6.8 1
Peptidase_M49 Peptidase family M49 -0.8 6.9 1
RNase_H2-Ydr279 Ydr279p protein family (RNase H2 comp -0.5 7 1
Talin_middle Talin, middle domain 0.3 7.2 1
CTV_P23 Citrus tristeza virus (CTV) P23 prote 0.3 7.3 1
Kunitz_legume Trypsin and protease inhibitor 1.4 7.6 1
MGAT2 N-acetylglucosaminyltransferase II (M -1.7 8 1
RhoGAP RhoGAP domain 0.6 8.4 1
Pox_L5 Poxvirus L5 protein family 2.0 8.4 1
PBP_dimer Penicillin-binding Protein dimerisati 0.8 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AOX 1/1 154 165 .. 264 275 .] -0.6 6.7
Pox_L5 1/1 186 202 .. 67 82 .] 2.0 8.4
SASP_gamma 1/1 191 199 .. 1 9 [. 2.1 3.6
DUF543 1/1 209 220 .. 69 80 .] 4.0 1.7
Glyco_hydro_2_N 1/1 213 228 .. 1 16 [. 2.9 1.3
Lectin_legB 1/1 225 290 .. 82 159 .. 2.0 2.3
Gmad1 1/1 249 269 .. 149 173 .. 3.8 0.95
RCC1 1/1 314 321 .. 61 68 .] 2.2 6.7
TSP_3 1/6 396 408 .. 1 12 [. 1.7 25
TSP_3 2/6 409 416 .. 1 8 [. 1.0 41
Talin_middle 1/1 425 448 .. 59 85 .. 0.3 7.2
F5_F8_type_C 1/1 432 456 .. 1 44 [. 14.0 0.0018
Ceramidase_alk 1/1 485 509 .. 743 771 .] -0.4 6.8
CoA_trans 1/1 518 537 .. 1 21 [. 1.7 4.1
MGAT2 1/1 536 557 .. 13 34 .. -1.7 8
DUF508 1/1 544 563 .. 139 159 .] 2.7 1.3
Fil_haemagg 1/2 558 613 .. 1 75 [] 1.8 8.8
Clathrin_propel 1/1 601 643 .. 1 43 [] 4.2 4.8
WDYHV 1/1 612 633 .. 222 248 .] 5.6 0.24
Patched 1/1 636 667 .. 1 33 [. -1.1 6.7
Peptidase_M49 1/1 645 664 .. 562 578 .] -0.8 6.9
FlgD 1/1 678 709 .. 103 155 .] 2.9 1.9
DUF2334 1/1 694 701 .. 1 8 [. -0.3 6.3
Kunitz_legume 1/1 696 706 .. 1 11 [. 1.4 7.6
PBP_dimer 1/1 742 761 .. 176 195 .] 0.8 8.8
Binary_toxB 1/2 749 757 .. 1 9 [. 1.4 1.7
TSP_3 3/6 750 762 .. 1 12 [. 4.0 5.3
Binary_toxB 2/2 762 775 .. 1 14 [. 4.8 0.19
TSP_3 4/6 763 775 .. 1 15 [] 4.3 4.4
TSP_3 5/6 788 800 .. 1 15 [] 5.1 2.6
TSP_3 6/6 823 835 .. 1 15 [] 4.8 3
Ad_cyc_g-alpha 1/1 861 890 .. 27 56 .] 8.5 0.12
Orthopox_F14 1/1 881 909 .. 46 73 .] 1.8 5.1
Fil_haemagg 2/2 958 1004 .. 1 75 [] 1.2 13
Big_3 1/2 962 979 .. 52 70 .] 0.7 26
GBS_Bsp-like 1/1 965 983 .. 46 64 .. 2.9 2.7
CTV_P23 1/1 969 997 .. 1 30 [. 0.3 7.3
PKD 1/4 987 1004 .. 75 92 .] 0.6 12
Big_3 2/2 993 1004 .. 60 70 .] 2.7 7.7
DUF2454 1/2 1011 1025 .. 307 322 .] 1.0 4.9
Cadherin 1/5 1028 1058 .. 1 28 [. 0.8 16
PKD 2/4 1028 1104 .. 1 92 [] 16.6 0.00015
He_PIG 1/4 1046 1093 .. 1 61 [] 44.7 6.8e-12
YceI 1/1 1059 1106 .. 1 69 [. 1.3 6.3
Flagellin_IN 1/2 1067 1090 .. 1 26 [. 1.1 18
Cadherin 2/5 1071 1087 .. 91 107 .] 2.4 5.5
Big_2 1/4 1076 1098 .. 67 90 .] 4.6 1.2
DUF2454 2/2 1110 1124 .. 307 322 .] 1.0 4.9
PKD 3/4 1137 1203 .. 27 92 .] 5.8 0.31
He_PIG 2/4 1145 1192 .. 1 61 [] 42.6 2.7e-11
Flagellin_IN 2/2 1166 1190 .. 1 27 [. 4.6 1.9
Cadherin 3/5 1170 1186 .. 91 107 .] 2.7 4.6
Big_2 2/4 1174 1197 .. 66 90 .] 3.7 2.1
Trehalose_PPase 1/1 1176 1205 .. 222 251 .] 1.7 3.6
PKD 4/4 1236 1302 .. 27 92 .] 12.8 0.0021
He_PIG 3/4 1244 1291 .. 1 61 [] 47.5 1.1e-12
Cadherin 4/5 1269 1285 .. 91 107 .] 8.1 0.13
Peptidase_M30 1/1 1272 1285 .. 406 419 .] 0.6 4.8
Big_2 3/4 1277 1296 .. 70 90 .] 4.6 1.2
DAG1 1/1 1314 1386 .. 32 107 .. 5.5 0.088
He_PIG 4/4 1343 1390 .. 1 61 [] 42.6 2.6e-11
Cadherin 5/5 1368 1384 .. 91 107 .] 7.6 0.18
Big_2 4/4 1377 1395 .. 71 90 .] 4.8 1
RNase_H2-Ydr279 1/1 1454 1461 .. 409 416 .] -0.5 7
DUF1901 1/1 1457 1475 .. 63 81 .. 3.1 3
RhoGAP 1/1 1532 1545 .. 142 155 .] 0.6 8.4
Plectin 1/1 1577 1590 .. 9 22 .. 2.9 6.5
Patatin 1/1 1622 1635 .. 1 15 [. 2.3 2.9
Alignments of top-scoring domains:
AOX: domain 1 of 1, from 154 to 165: score -0.6, E = 6.7
*->dqkekeLdpNPF<-*
+q+ eL+ NPF
gi|1961919 154 HQQNVELAINPF 165
Pox_L5: domain 1 of 1, from 186 to 202: score 2.0, E = 8.4
*->INGrSskvSlndi.lrR<-*
ING +s +S+n+i+l+
gi|1961919 186 INGNASRTSANEIrLTE 202
SASP_gamma: domain 1 of 1, from 191 to 199: score 2.1, E = 3.6
*->SaTnAqqVr<-*
S+T+A+++r
gi|1961919 191 SRTSANEIR 199
DUF543: domain 1 of 1, from 209 to 220: score 4.0, E = 1.7
*->GrAYseCeadfn<-*
G+AYs+ + dfn
gi|1961919 209 GSAYSNARIDFN 220
Glyco_hydro_2_N: domain 1 of 1, from 213 to 228: score 2.9, E = 1.3
CS -S-EEE--EEEEEEEE
*->srrvqsLNGgWkFkla<-*
s+ ++++N +W+F ++
gi|1961919 213 SNARIDFNFDWDFTFD 228
Lectin_legB: domain 1 of 1, from 225 to 290: score 2.0, E = 2.3
CS EEEEEEES..TTSS-BEEEEEEEEETT--S.TTB SSGGGTTTSST
*->FvFaIknlpsksgngGdGLAFflaPsdtqdppga..ssggyLGLfNs
F+F +++ ++ g+dG+ F+l +++ d + a ++sgg LG+
gi|1961919 225 FTFDL--YFGTNDGGADGIGFVLHNDP--DGDRAvgLSGGGLGIAG- 266
CS TSTTGGGGCCEEEEEEETST.GGGTTTS.SSSE
snngdnpsNhiVAVEFDTvlNkefnDiDdnyNH<-*
++V++EFDT++N+ Di +H
gi|1961919 267 -------VERSVGIEFDTFFNSGTSDISS--DH 290
Gmad1: domain 1 of 1, from 249 to 269: score 3.8, E = 0.95
*->RDGtRaAvvverggggqvyVagVeR<-*
+DG Ra+ + +gg + +agVeR
gi|1961919 249 PDGDRAVGL----SGGGLGIAGVER 269
RCC1: domain 1 of 1, from 314 to 321: score 2.2, E = 6.7
CS ESSEEEEE
*->GgqHtval<-*
G++Htv++
gi|1961919 314 GNYHTVVV 321
TSP_3: domain 1 of 6, from 396 to 408: score 1.7, E = 25
CS --TT-SSS-.. G
*->eDsDnDgvgdn.D<-*
eDsD+Dg+ ++ D
gi|1961919 396 EDSDGDGINNDvD 408
TSP_3: domain 2 of 6, from 409 to 416: score 1.0, E = 41
CS --TT-SSS
*->eDsDnDgv<-*
DsD+Dg+
gi|1961919 409 LDSDSDGI 416
Talin_middle: domain 1 of 1, from 425 to 448: score 0.3, E = 7.2
*->vaamtAATAqVVnlTAsdPdevDyeaV<-*
+a +A+TA VV TA++++ aV
gi|1961919 425 IASAGAGTATVVSATAGHEAS---NAV 448
F5_F8_type_C: domain 1 of 1, from 432 to 456: score 14.0, E = 0.0018
CS CEEESS-STTCSS.B....G-GGGGCCTSSSSS......TTSSE
*->qitaSSeesgsggagrarLwspasaalDGngntyghsvspstaW<-*
++t+ S ++g++ as+a+DG+ +t+W
gi|1961919 432 TATVVSATAGHE----------ASNAVDGD---------ATTYW 456
Ceramidase_alk: domain 1 of 1, from 485 to 509: score -0.4, E = 6.8
*->HfGeaKkilLLktgkilafeGstrsFtVv<-*
+fGe K + i ++ +s+++++V
gi|1961919 485 FFGEPKSTG----SDIAEIDASKHAMVVW 509
CoA_trans: domain 1 of 1, from 518 to 537: score 1.7, E = 4.1
CS CCHHHHHHCCG-TTTEEEEES
*->vesaaeAvareikDGmtvnvG<-*
++ a++++ +++DG t++vG
gi|1961919 518 TAEATAMLN-YVRDGGTLYVG 537
MGAT2: domain 1 of 1, from 536 to 557: score -1.7, E = 8
*->vsfrNedQavlNaDkfgdLpkd<-*
v f N++++ +N++kf++ +++
gi|1961919 536 VGFENLNFTTQNEAKFSQIVDR 557
DUF508: domain 1 of 1, from 544 to 563: score 2.7, E = 1.3
*->asksvaQlalIVDvtEKNfdl<-*
++++ a ++ IVD Nf l
gi|1961919 544 TTQNEAKFSQIVD-RVLNFNL 563
Fil_haemagg: domain 1 of 2, from 558 to 613: score 1.8, E = 8.8
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
v+ +l+++ + +g +++ g +++a+g +t a g++ + ++
gi|1961919 558 VLNFNLRIDSDSSGPSSAPEGNLVGASGSVTTAASGIFSREDS---- 600
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
++++++L ++
gi|1961919 601 ---------------QPISSQNQLIVND 613
Clathrin_propel: domain 1 of 1, from 601 to 643: score 4.2, E = 4.8
CS EECCEEEEEEEEEEEEEEEEEEEEEE.EETCECEEEEEEEETT
*->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-*
++i+s+++ +++ +s+++ +++++ qd+ +g+ ++++d++
gi|1961919 601 QPISSQNQLIVNDSNSDIYGVVYDSSDMQDGFTGNLILVGDVN 643
WDYHV: domain 1 of 1, from 612 to 633: score 5.6, E = 0.24
*->peavkeavkeqgpGvVysesefqdfFg<-*
++++ + ++GvVy+ s++qd F+
gi|1961919 612 NDSN-----SDIYGVVYDSSDMQDGFT 633
Patched: domain 1 of 1, from 636 to 667: score -1.1, E = 6.7
*->llsldivytrtpdDirksltergarsedeplke<-*
l +++ v+++ ++++ +++++++++e e+ ++
gi|1961919 636 LILVGDVNMYEEANAG-FFSSIQSFAEPELSVF 667
Peptidase_M49: domain 1 of 1, from 645 to 664: score -0.8, E = 6.9
*->YeetaeGl...iqSFleRyp<-*
Yee +G ++iqSF e ++
gi|1961919 645 YEEANAGFfssIQSFAEPEL 664
FlgD: domain 1 of 1, from 678 to 709: score 2.9, E = 1.9
*->ntivyldgggggetGsvsggvevgLpsaAdevtvtikDaaGqvvnve
++ v+l+ ++++gv+ d+ +++++Da+G +
gi|1961919 678 SE-VTLE--------VATAGVN-------DGDVLVVYDADGAE---- 704
lVrtid<-*
V + +
gi|1961919 705 -VNRSN 709
DUF2334: domain 1 of 1, from 694 to 701: score -0.3, E = 6.3
*->VLilYDsp<-*
VL++YD++
gi|1961919 694 VLVVYDAD 701
Kunitz_legume: domain 1 of 1, from 696 to 706: score 1.4, E = 7.6
CS B-BETTSCB-B
*->pVLDtdGneLr<-*
V+D+dG e++
gi|1961919 696 VVYDADGAEVN 706
PBP_dimer: domain 1 of 1, from 742 to 761: score 0.8, E = 8.8
*->kdGkrkyevDarGrviptls<-*
++ k+++ vD++G i ++
gi|1961919 742 QVAKITFAVDSDGDGIANHL 761
Binary_toxB: domain 1 of 2, from 749 to 757: score 1.4, E = 1.7
*->dlDtDnDgI<-*
++D+D+DgI
gi|1961919 749 AVDSDGDGI 757
TSP_3: domain 3 of 6, from 750 to 762: score 4.0, E = 5.3
CS --TT-SSS-.. G
*->eDsDnDgvgdn.D<-*
DsD+Dg+ ++ D
gi|1961919 750 VDSDGDGIANHlD 762
Binary_toxB: domain 2 of 2, from 762 to 775: score 4.8, E = 0.19
*->dlDtDnDgIPDlwE<-*
dlD+DnDg PD E
gi|1961919 762 DLDSDNDGLPDNIE 775
TSP_3: domain 4 of 6, from 763 to 775: score 4.3, E = 4.4
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsDnDg D +
gi|1961919 763 LDSDNDGLP--DNIE 775
TSP_3: domain 5 of 6, from 788 to 800: score 5.1, E = 2.6
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsDnDg Da +
gi|1961919 788 SDSDNDGLD--DAYE 800
TSP_3: domain 6 of 6, from 823 to 835: score 4.8, E = 3
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsD+Dg+ D+ +
gi|1961919 823 IDSDGDGIS--DTEE 835
Ad_cyc_g-alpha: domain 1 of 1, from 861 to 890: score 8.5, E = 0.12
*->sdMEGIltkPpPltPtDnsfindgeseake<-*
sd+ GI+++P +l ++D+++++ g+ + +
gi|1961919 861 SDVNGIIDDPTTLPDADGDLEFGGDVDFRD 890
Orthopox_F14: domain 1 of 1, from 881 to 909: score 1.8, E = 5.1
*->ELGCDvDF.DEdFsDiaDDvLEsLiEqDv<-*
E G DvDF+D F D+ Dv i D
gi|1961919 881 EFGGDVDFrDSTFTDLVNDVPLFTIGADQ 909
Fil_haemagg: domain 2 of 2, from 958 to 1004: score 1.2, E = 13
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+a+G+lt++aa +++ng ++++ ++l+ g +ngg
gi|1961919 958 DASGNLTYTAA-----QDANGSAIVT---VSLSDDGGTANGG----- 991
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
+ +a+ +++ +
gi|1961919 992 ---------------VDTSASQTFTITV 1004
Big_3: domain 1 of 2, from 962 to 979: score 0.7, E = 26
*->tVTytYkGqpvtatftVtV<-*
++Tyt + + ++ ++ VtV
gi|1961919 962 NLTYTAAQD-ANGSAIVTV 979
GBS_Bsp-like: domain 1 of 1, from 965 to 983: score 2.9, E = 2.7
*->YtAtkqgDGkytvtikaaN<-*
YtA+++++G++ vt+ +++
gi|1961919 965 YTAAQDANGSAIVTVSLSD 983
CTV_P23: domain 1 of 1, from 969 to 997: score 0.3, E = 7.3
*->mdntsGqtFvsvnLsDEsntAsteveavss<-*
+++ G v v LsD+ tA v+ s
gi|1961919 969 -QDANGSAIVTVSLSDDGGTANGGVDTSAS 997
PKD: domain 1 of 4, from 987 to 1004: score 0.6, E = 12
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
t++ gv +++++t t+tV
gi|1961919 987 TANGGVDTSASQTFTITV 1004
Big_3: domain 2 of 2, from 993 to 1004: score 2.7, E = 7.7
*->q.pvtatftVtV<-*
++++++tft+tV
gi|1961919 993 DtSASQTFTITV 1004
DUF2454: domain 1 of 2, from 1011 to 1025: score 1.0, E = 4.9
*->pvLgqYilsnPfgtaf<-*
pv gq ++s+P +t++
gi|1961919 1011 PVVGQ-TISDPTATQD 1025
Cadherin: domain 1 of 5, from 1028 to 1058: score 0.8, E = 16
CS --EEE-SS.. .S---EEEEE---S. .-T
*->ysasvpEnap..vGtevltvtAtDaDd.Plg<-*
+s+s+p n+ ++v +lt+tAt aDd+Pl+
gi|1961919 1028 FSFSIPQNSFtdVEGDPLTYTATLADDsPLP 1058
PKD: domain 2 of 4, from 1028 to 1104: score 16.6, E = 0.00015
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEEEE-SS.SSS
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsysWdFGDggsp
+s s ++++ +Ft+ G+p++y+ + D+++
gi|1961919 1028 FSFS--------IPQN---SFTDVE------GDPLTYTATLADDSPL 1057
CS EEEECSSEEEEEESS. ... SEEEEEEEEEEETTCEEEEEEEEEEE
gttstepnvtHtYskg..sVt.pGtYtVtLtvsngvgsasattttvtV<-
+++++ +t t+s g + ++++Gt +V++t+s+ ++++++++ ++ V
gi|1961919 1058 PSWLSFDPATLTFS-GipAGSdVGTVNVKVTASDPASASVSSNFQLDV 1104
CS
*
gi|1961919 - -
He_PIG: domain 1 of 4, from 1046 to 1093: score 44.7, E = 6.8e-12
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
tyt+ t+ ++++LPs+L++d++t++++G P+ +
gi|1961919 1046 TYTA------------TLADDSPLPSWLSFDPATLTFSGIPAGS-DV 1079
Gsytftvtatdgsg<-*
G+ ++ vta+d++
gi|1961919 1080 GTVNVKVTASDPAS 1093
YceI: domain 1 of 1, from 1059 to 1106: score 1.3, E = 6.3
*->tyvatlDpgahSsvsFtvrhldlggisevgrGrFd.dfstiGtldlK
+++ ++Dp ++++F++ + s v G+ + +++ +
gi|1961919 1059 SWL-SFDP---ATLTFSGIP----AGSDV--GTVNvKVT--A----- 1088
EeDpeddlgassvggdvtidvaS<-*
+d++++sv++++ +dvaS
gi|1961919 1089 -----SDPASASVSSNFQLDVAS 1106
Flagellin_IN: domain 1 of 2, from 1067 to 1090: score 1.1, E = 18
*->tltinggggkensvadgvdislsagd<-*
tlt++g +++ +++v++ ++a d
gi|1961919 1067 TLTFSGIPAGSD--VGTVNVKVTASD 1090
Cadherin: domain 2 of 5, from 1071 to 1087: score 2.4, E = 5.5
CS ...S---EEEE--EEE-
*->gggpplsstatvtitVl<-*
+g p+ s+++tv+++V+
gi|1961919 1071 SGIPAGSDVGTVNVKVT 1087
Big_2: domain 1 of 4, from 1076 to 1098: score 4.6, E = 1.2
CS E-SSS-EEEEEEETT.TEEEEEEE
*->alakGtatItatsgdgnksasvtv<-*
+ +Gt+++++t+ d sasv
gi|1961919 1076 GSDVGTVNVKVTASD-PASASVSS 1098
DUF2454: domain 2 of 2, from 1110 to 1124: score 1.0, E = 4.9
*->pvLgqYilsnPfgtaf<-*
pv gq ++s+P +t++
gi|1961919 1110 PVVGQ-TISDPTATQD 1124
PKD: domain 3 of 4, from 1137 to 1203: score 5.8, E = 0.31
CS B.TT.SSECEEEEE-SS.SSSEEEECSSEEEEEESS. ... SEEE
*->ydpdpGspvsysWdFGDggspgttstepnvtHtYskg..sVt.pGtY
+d+d +p+ y+ + Dg++ +++++ +t t+s g +s++++Gt
gi|1961919 1137 TDAD-SDPLIYTATLADGSPLPSWLSFDPATLTFS-GipSGSdVGTV 1181
CS EEEEEEEETTCEEEEEEEEEEE
tVtLtvsngvgsasattttvtV<-*
+V++t++++ ++++++ ++ V
gi|1961919 1182 NVKVTATDSSTASVSSNFQLDV 1203
He_PIG: domain 2 of 4, from 1145 to 1192: score 42.6, E = 2.7e-11
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
yt+ t+ +g++LPs+L++d++t++++G P+ +
gi|1961919 1145 IYTA------------TLADGSPLPSWLSFDPATLTFSGIPSGS-DV 1178
Gsytftvtatdgsg<-*
G+ ++ vtatd+s+
gi|1961919 1179 GTVNVKVTATDSST 1192
Flagellin_IN: domain 2 of 2, from 1166 to 1190: score 4.6, E = 1.9
*->tltinggggkensvadgvdislsagds<-*
tlt++g ++++ +++v++ ++a+ds
gi|1961919 1166 TLTFSGIPSGSD--VGTVNVKVTATDS 1190
Cadherin: domain 3 of 5, from 1170 to 1186: score 2.7, E = 4.6
CS ...S---EEEE--EEE-
*->gggpplsstatvtitVl<-*
+g p+ s+++tv+++V+
gi|1961919 1170 SGIPSGSDVGTVNVKVT 1186
Big_2: domain 2 of 4, from 1174 to 1197: score 3.7, E = 2.1
CS EE-SSS-EEEEEEETT.TEEEEEEE
*->talakGtatItatsgdgnksasvtv<-*
++ +Gt+++++t+ d +++asv
gi|1961919 1174 SGSDVGTVNVKVTATD-SSTASVSS 1197
Trehalose_PPase: domain 1 of 1, from 1176 to 1205: score 1.7, E = 3.6
*->ssmsglsievfatsvGskpssakyrlddps<-*
s+++ ++++v at+ ++ +s ++ ld++s
gi|1961919 1176 SDVGTVNVKVTATDSSTASVSSNFQLDVAS 1205
PKD: domain 4 of 4, from 1236 to 1302: score 12.8, E = 0.0021
CS B.TT.SSECEEEEE-SS.SSSEEEECSSEEEEEESS. ... SEEE
*->ydpdpGspvsysWdFGDggspgttstepnvtHtYskg..sVt.pGtY
+d+d +p++y + D+++ +++++ +t t+s g +s++++Gt
gi|1961919 1236 TDAD-SDPLTYAATLSDDSPLPSWLSFDPATRTFS-GvpSRSdVGTV 1280
CS EEEEEEEETTCEEEEEEEEEEE
tVtLtvsngvgsasattttvtV<-*
+V++t+s+ ++++++++ ++ V
gi|1961919 1281 NVKVTASDPASASVSSNFQLDV 1302
He_PIG: domain 3 of 4, from 1244 to 1291: score 47.5, E = 1.1e-12
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty++ t++++++LPs+L++d++t +++G+P+ +
gi|1961919 1244 TYAA------------TLSDDSPLPSWLSFDPATRTFSGVPSRS-DV 1277
Gsytftvtatdgsg<-*
G+ ++ vta+d++
gi|1961919 1278 GTVNVKVTASDPAS 1291
Cadherin: domain 4 of 5, from 1269 to 1285: score 8.1, E = 0.13
CS ...S---EEEE--EEE-
*->gggpplsstatvtitVl<-*
+g p++s+++tv+++V+
gi|1961919 1269 SGVPSRSDVGTVNVKVT 1285
Peptidase_M30: domain 1 of 1, from 1272 to 1285: score 0.6, E = 4.8
*->PSVQTVGtlSVVVh<-*
PS VGt+ V+V+
gi|1961919 1272 PSRSDVGTVNVKVT 1285
Big_2: domain 3 of 4, from 1277 to 1296: score 4.6, E = 1.2
CS SS-EEEEEEETT.TEEEEEEE
*->kGtatItatsgdgnksasvtv<-*
+Gt+++++t+ d sasv
gi|1961919 1277 VGTVNVKVTASD-PASASVSS 1296
DAG1: domain 1 of 1, from 1314 to 1386: score 5.5, E = 0.088
CS XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX..X..XXX
*->lpdssavvGraFrlhvptellassedqGiikiseadKdgheLkapsw
+ d ++ G +F + p + + +++ + +++ d L psw
gi|1961919 1314 ISDPTVFRGTPFSFSLPQNSFTDADS-DPLTYAATLADDSPL--PSW 1357
CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
LhwdadsrtLqGLPLdtDKGVhyIsVSrl<-*
L +d rt G P D G I V ++
gi|1961919 1358 LSFDPATRTFSGIPSRSDIGTVNIKVTAT 1386
He_PIG: domain 4 of 4, from 1343 to 1390: score 42.6, E = 2.6e-11
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty++ t+ ++++LPs+L++d++t +++G P+ +
gi|1961919 1343 TYAA------------TLADDSPLPSWLSFDPATRTFSGIPSRS-DI 1376
Gsytftvtatdgsg<-*
G+ ++ vtatd+s+
gi|1961919 1377 GTVNIKVTATDSST 1390
Cadherin: domain 5 of 5, from 1368 to 1384: score 7.6, E = 0.18
CS ...S---EEEE--EEE-
*->gggpplsstatvtitVl<-*
+g p++s+ +tv+i+V+
gi|1961919 1368 SGIPSRSDIGTVNIKVT 1384
Big_2: domain 4 of 4, from 1377 to 1395: score 4.8, E = 1
CS S-EEEEEEETT.TEEEEEEE
*->GtatItatsgdgnksasvtv<-*
Gt++I++t+ d +++asv
gi|1961919 1377 GTVNIKVTATD-SSTASVSS 1395
RNase_H2-Ydr279: domain 1 of 1, from 1454 to 1461: score -0.5, E = 7
*->mkkIssFF<-*
+++I+sFF
gi|1961919 1454 RTRIDSFF 1461
DUF1901: domain 1 of 1, from 1457 to 1475: score 3.1, E = 3
CS S----B--GGGS-SHHHHH
*->IqSFFqIDikKLESrerak<-*
I SFF +D k+L+S ra+
gi|1961919 1457 IDSFFSLDGKRLSSDYRAD 1475
RhoGAP: domain 1 of 1, from 1532 to 1545: score 0.6, E = 8.4
CS HHHH---SS..HHH
*->gPtLlrppdddsad<-*
+P+Llr++++++++
gi|1961919 1532 APNLLRNDATTLDL 1545
Plectin: domain 1 of 1, from 1577 to 1590: score 2.9, E = 6.5
CS CTTSEEECCCTCEE
*->aTGGliDPvtgerL<-*
a+G +iDP tge L
gi|1961919 1577 ADGSIIDPLTGETL 1590
Patatin: domain 1 of 1, from 1622 to 1635: score 2.3, E = 2.9
*->LvLdGGGarGiaWhi<-*
L+GGG+ Gi+ i
gi|1961919 1622 TTLEGGGFLGIY-LI 1635
//