hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196192665.fa
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Query sequence: gi|196192665|gb|EDX87629.1|
Accession: [none]
Description: PKD domain protein [Synechococcus sp. PCC 7335]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKD PKD domain 57.9 3e-17 2
SoxZ Sulphur oxidation protein SoxZ 11.5 0.0058 3
Cadherin Cadherin domain 11.1 0.018 3
efhand_Ca_insen Ca2+ insensitive EF hand 6.5 0.26 1
Me-amine-dh_H Methylamine dehydrogenase heavy chain 4.2 0.36 2
DUF1999 Protein of unknown function (DUF1999) 4.6 0.52 2
DUF1072 Protein of unknown function (DUF1072) 4.6 0.8 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 3.0 1 1
SdiA-regulated SdiA-regulated 4.1 1.1 1
Chlam_PMP Chlamydia polymorphic membrane protei 7.2 1.1 2
DUF2025 Protein of unknown function (DUF2025) 4.0 1.2 1
Nitro_FeMo-Co Dinitrogenase iron-molybdenum cofacto 4.2 1.2 2
Glyco_hydro_49 Glycosyl hydrolase family 49 0.3 1.9 1
Pox_N2L Poxvirus N2L protein 2.3 2.1 1
Reg_prop Two component regulator propeller 6.9 2.2 1
He_PIG Putative Ig domain 4.0 2.4 1
Pro_Al_protease Alpha-lytic protease prodomain 4.0 2.8 1
TFIID-18kDa Transcription initiation factor IID, 2.7 2.8 1
DUF823 Salmonella repeat of unknown function 1.2 2.9 1
HAT HAT (Half-A-TPR) repeat 3.7 3.2 1
F420_oxidored NADP oxidoreductase coenzyme F420-dep 2.0 3.2 1
DUF266 Domain of unknown function, DUF266 1.3 3.4 1
PA26 PA26 p53-induced protein (sestrin) 0.3 3.5 1
MIR MIR domain 1.3 4.2 1
Cas_GSU0053 CRISPR-associated protein GSU0053 (Ca 1.8 4.9 1
SCPU Spore Coat Protein U domain 2.8 5.2 1
Peptidase_S11 D-alanyl-D-alanine carboxypeptidase 1.3 5.2 1
DJ-1_PfpI DJ-1/PfpI family 1.5 5.5 1
DUF811 Domain of unknown function (DUF811) 0.8 5.9 1
Dehyd-heme_bind Quinohemoprotein amine dehydrogenase 3.3 5.9 1
DUF2345 Uncharacterized protein conserved in 1.7 6.2 1
RE_MjaII MjaII restriction endonuclease 0.4 6.2 1
VirC1 VirC1 protein 0.6 6.3 1
DUF834 Domain of unknown function (DUF834) 2.6 6.5 1
Lin0512_fam Conserved hypothetical protein (Lin05 1.5 6.6 1
DUF2134 Predicted membrane protein (DUF2134) 1.5 6.9 1
Orbi_VP4 Orbivirus VP4 core protein -0.6 7.1 1
gp12-short_mid Phage short tail fibre protein gp12, 1.3 7.4 1
Staphylokinase Staphylokinase/Streptokinase family 1.7 7.6 1
DUF1222 Protein of unknown function (DUF1222) -0.9 7.7 1
PG_binding_1 Putative peptidoglycan binding domain 3.1 7.7 2
PSCyt1 Planctomycete cytochrome C 1.2 7.8 1
DUF721 Protein of unknown function (DUF721) 1.4 7.8 1
NPCBM_assoc NPCBM-associated, NEW3 domain of alph 2.0 8.1 1
MTHFR Methylenetetrahydrofolate reductase -0.2 8.7 1
DUF1556 Protein of unknown function (DUF1556) 1.3 8.8 1
DUF2402 Putative GPI-anchored glycine-serine 1.9 9.2 1
MIP Major intrinsic protein -0.4 9.3 1
DUF490 Family of unknown function (DUF490) -0.2 9.4 1
HipA_N HipA-like N-terminal domain -0.4 9.5 1
Flexi_CP Viral coat protein 0.9 9.6 1
Dymeclin Dyggve-Melchior-Clausen syndrome prot -1.3 9.6 1
DUF738 Protein of unknown function (DUF738) 1.0 9.7 1
TNV_CP Satellite tobacco necrosis virus coat -0.2 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pro_Al_protease 1/1 143 162 .. 49 68 .] 4.0 2.8
DUF721 1/1 196 221 .. 39 73 .. 1.4 7.8
MIR 1/1 253 263 .. 1 11 [. 1.3 4.2
RE_MjaII 1/1 274 281 .. 1 8 [. 0.4 6.2
F420_oxidored 1/1 333 357 .. 229 253 .] 2.0 3.2
TFIID-18kDa 1/1 371 381 .. 1 11 [. 2.7 2.8
Dehyd-heme_bind 1/1 411 426 .. 53 68 .] 3.3 5.9
DUF738 1/1 415 426 .. 95 106 .. 1.0 9.7
Reg_prop 1/1 561 585 .. 1 23 [] 6.9 2.2
DUF811 1/1 569 585 .. 263 279 .] 0.8 5.9
MTHFR 1/1 641 654 .. 95 108 .. -0.2 8.7
Cas_GSU0053 1/1 646 659 .. 182 199 .] 1.8 4.9
DUF1072 1/1 685 690 .. 1 6 [. 4.6 0.8
Chlam_PMP 1/2 690 737 .. 1 19 [] 1.6 38
gp12-short_mid 1/1 730 746 .. 65 81 .] 1.3 7.4
MIP 1/1 732 740 .. 255 263 .] -0.4 9.3
Orbi_VP4 1/1 758 767 .. 642 651 .] -0.6 7.1
HAT 1/1 759 771 .. 21 33 .] 3.7 3.2
SCPU 1/1 818 857 .. 11 52 .. 2.8 5.2
DUF834 1/1 823 843 .. 1 21 [. 2.6 6.5
Glyco_hydro_49 1/1 825 846 .. 1 22 [. 0.3 1.9
PKD 1/2 835 918 .. 1 92 [] 55.9 1.2e-16
PSCyt1 1/1 845 867 .. 20 47 .. 1.2 7.8
He_PIG 1/1 894 907 .. 48 61 .] 4.0 2.4
Peptidase_S11 1/1 906 930 .. 1 25 [. 1.3 5.2
TNV_CP 1/1 926 936 .. 81 91 .. -0.2 9.9
PKD 2/2 929 962 .. 1 41 [. 2.0 4.4
DUF2134 1/1 931 947 .. 94 115 .] 1.5 6.9
NPCBM_assoc 1/1 935 952 .. 1 18 [. 2.0 8.1
Chlam_PMP 2/2 1025 1040 .. 1 19 [] 5.6 3.1
efhand_Ca_insen 1/1 1085 1093 .. 1 9 [. 6.5 0.26
Flexi_CP 1/1 1105 1120 .. 119 134 .. 0.9 9.6
SdiA-regulated 1/1 1167 1179 .. 94 106 .] 4.1 1.1
PG_binding_1 1/2 1317 1351 .. 1 33 [. 2.4 11
Me-amine-dh_H 1/2 1361 1379 .. 325 343 .] 1.9 1.6
DUF2402 1/1 1467 1497 .. 27 63 .. 1.9 9.2
VirC1 1/1 1504 1519 .. 42 57 .. 0.6 6.3
SoxZ 1/3 1510 1527 .. 87 104 .] 5.1 0.52
Cadherin 1/3 1513 1528 .. 83 107 .] 0.9 15
HipA_N 1/1 1600 1608 .. 99 107 .] -0.4 9.5
Dymeclin 1/1 1610 1626 .. 775 791 .] -1.3 9.6
Nitro_FeMo-Co 1/2 1630 1639 .. 1 10 [. 1.0 11
DUF1999 1/2 1662 1680 .. 150 168 .] 2.3 2.3
Lin0512_fam 1/1 1770 1785 .. 101 116 .] 1.5 6.6
Staphylokinase 1/1 1794 1829 .. 1 44 [. 1.7 7.6
Me-amine-dh_H 2/2 1818 1831 .. 330 343 .] 2.3 1.2
vATP-synt_E 1/1 1825 1847 .. 146 182 .. 3.0 1
DJ-1_PfpI 1/1 1829 1866 .. 1 55 [. 1.5 5.5
SoxZ 2/3 1860 1882 .. 82 104 .] 3.6 1.5
Cadherin 2/3 1865 1883 .. 80 107 .] 5.0 1
DUF266 1/1 1955 1970 .. 244 259 .. 1.3 3.4
PG_binding_1 2/2 2092 2114 .. 1 26 [. 0.6 35
Pox_N2L 1/1 2095 2108 .. 213 226 .] 2.3 2.1
PA26 1/1 2173 2198 .. 1 26 [. 0.3 3.5
SoxZ 3/3 2194 2211 .. 87 104 .] 2.8 2.8
Cadherin 3/3 2196 2212 .. 82 107 .] 5.3 0.86
DUF2345 1/1 2243 2260 .. 1 18 [. 1.7 6.2
DUF2025 1/1 2288 2299 .. 95 106 .] 4.0 1.2
DUF490 1/1 2320 2353 .. 1 38 [. -0.2 9.4
DUF823 1/1 2325 2333 .. 1 9 [. 1.2 2.9
DUF1556 1/1 2442 2451 .. 89 98 .] 1.3 8.8
Nitro_FeMo-Co 2/2 2569 2588 .. 1 20 [. 3.2 2.4
DUF1222 1/1 2574 2585 .. 473 484 .] -0.9 7.7
DUF1999 2/2 2601 2619 .. 150 168 .] 2.3 2.3
Alignments of top-scoring domains:
Pro_Al_protease: domain 1 of 1, from 143 to 162: score 4.0, E = 2.8
CS .HCCCHCCHCCCTEECCCEC
*->gtvaaaafaklagvaaglvr<-*
gt++++ +a+la++++++v+
gi|1961926 143 GTEGGELIATLAELTGADVA 162
DUF721: domain 1 of 1, from 196 to 221: score 1.4, E = 7.8
*->alAahtrPvkl.rfprrkekgepgdG.tLvvrvesga<-*
a+A++t ++ l++ +G +L+++++sg+
gi|1961926 196 AIANYTSVLALpQ-----------NGvVLHLEADSGV 221
MIR: domain 1 of 1, from 253 to 263: score 1.3, E = 4.2
*->GyLhsgdvlrl<-*
G L+++dv+r+
gi|1961926 253 GELNGHDVVRF 263
RE_MjaII: domain 1 of 1, from 274 to 281: score 0.4, E = 6.2
*->MnlSpLPG<-*
Mnl++LPG
gi|1961926 274 MNLNDLPG 281
F420_oxidored: domain 1 of 1, from 333 to 357: score 2.0, E = 3.2
CS .CSTTEEEEEEESGGGHHHHHTHHH
*->ddvtGfggvdiGgLralerleprta<-*
d++tG +g+ G L+++ le++t+
gi|1961926 333 DQFTGSAGTGQGWLSQAAILESGTL 357
TFIID-18kDa: domain 1 of 1, from 371 to 381: score 2.7, E = 2.8
CS X--CCCCHHHH
*->hlFrkeLqsMM<-*
h F+++Lq+++
gi|1961926 371 HDFNTDLQQLV 381
Dehyd-heme_bind: domain 1 of 1, from 411 to 426: score 3.3, E = 5.9
CS HHTHHHHHHHHSBS--
*->ldevvpaLAkrYPLds<-*
+++v +LA++Y+L++
gi|1961926 411 QNDVQDFLAQKYGLET 426
DUF738: domain 1 of 1, from 415 to 426: score 1.0, E = 9.7
*->LkFLsKhYgLkr<-*
+ FL+++YgL++
gi|1961926 415 QDFLAQKYGLET 426
Reg_prop: domain 1 of 1, from 561 to 585: score 6.9, E = 2.2
*->slpgg.vtfalledsdGrlWigt.n<-*
+ ++++ +++ ++dG+l+i+t++
gi|1961926 561 IIDSNhYGGSFGFGPDGYLYIATgD 585
DUF811: domain 1 of 1, from 569 to 585: score 0.8, E = 5.9
*->GyvrmdeDGtLdvdlps<-*
G++ +++DG L+++ +
gi|1961926 569 GSFGFGPDGYLYIATGD 585
MTHFR: domain 1 of 1, from 641 to 654: score -0.2, E = 8.7
*->ddaLedakelGIRN<-*
dd+L+ ++++G+RN
gi|1961926 641 DDILDEIWAYGLRN 654
Cas_GSU0053: domain 1 of 1, from 646 to 659: score 1.8, E = 4.9
*->tIrAYgVkpvvGDRqsga<-*
+I+AYg++ + +g+
gi|1961926 646 EIWAYGLRNA----FRGG 659
DUF1072: domain 1 of 1, from 685 to 690: score 4.6, E = 0.8
*->MdDLHV<-*
M+DLHV
gi|1961926 685 MEDLHV 690
Chlam_PMP: domain 1 of 2, from 690 to 737: score 1.6, E = 38
*->ditFsgNsa.............................aggGGAiya
t +N+a+ + +++ ++ ++++ +++ + ++ + +++GGAi++
gi|1961926 690 VATVADNGAnfgwdgsvegftgnpafsdplysynhagaSPNGGAIVG 736
s<-*
gi|1961926 737 G 737
gp12-short_mid: domain 1 of 1, from 730 to 746: score 1.3, E = 7.4
CS SS-EEEEEEEEEEEEEE
*->NGiasitGtvkntdqyv<-*
NG+a +Gtv +d y
gi|1961926 730 NGGAIVGGTVYRGDLYP 746
MIP: domain 1 of 1, from 732 to 740: score -0.4, E = 9.3
CS HHHHHHHHH
*->GAalaaLvY<-*
GA++++ vY
gi|1961926 732 GAIVGGTVY 740
Orbi_VP4: domain 1 of 1, from 758 to 767: score -0.6, E = 7.1
*->rVesWldyLR<-*
+V++W+ yL
gi|1961926 758 YVQGWIRYLQ 767
HAT: domain 1 of 1, from 759 to 771: score 3.7, E = 3.2
*->vknWikyArFEEe<-*
v+ Wi+y +F+++
gi|1961926 759 VQGWIRYLQFDDN 771
SCPU: domain 1 of 1, from 818 to 857: score 2.8, E = 5.2
*->rtevwg.sGq..kdvgsatlldtlglgtaqtnttqlpiYgrivlp<-
r++++++sG+ + +++a +++t g ++ +++ g++++p
gi|1961926 818 RRIAYNgSGNlaPTITTARANTTSGAPDLA-----VTFTGAAIDP 857
*
gi|1961926 - -
DUF834: domain 1 of 1, from 823 to 843: score 2.6, E = 6.5
*->rarnaavptttadtartaaat<-*
++ ++++pt+t+++a+t+ ++
gi|1961926 823 NGSGNLAPTITTARANTTSGA 843
Glyco_hydro_49: domain 1 of 1, from 825 to 846: score 0.3, E = 1.9
CS XXXXXXXXXXXXX----BSSSE
*->pgtsspAlkveqaavTangadL<-*
g+++p + +++a++T +dL
gi|1961926 825 SGNLAPTITTARANTTSGAPDL 846
PKD: domain 1 of 2, from 835 to 918: score 55.9, E = 1.2e-16
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEEEE-SS .
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsysWdFGD...g
+ a+ +++a+ + VtFt+ + dp + +sy+WdFG +++
gi|1961926 835 ARAN-----TTSGAPDLAVTFTGAA-IDPE-DDELSYLWDFGFdgdA 874
CS SSSEEEECSSEEEEEESS....SEEEEEEEEEEETTCEEEEEEEEEEE
gspgttstepnvtHtYskgsVtpGtYtVtLtvsngvgsasattttvtV<-
++ tst n+t+tY+ G Yt++Ltvs+g +++++ +++ V
gi|1961926 875 DGMNDTSTDANPTYTYTD----NGAYTARLTVSDGINTTNSEPIQIAV 918
CS
*
gi|1961926 - -
PSCyt1: domain 1 of 1, from 845 to 867: score 1.2, E = 7.8
*->srdaalrgGdSGEaaivPGdpdaSelwe<-*
+++ + g aai+P+d + S+lw+
gi|1961926 845 DLAVTFTG-----AAIDPEDDELSYLWD 867
He_PIG: domain 1 of 1, from 894 to 907: score 4.0, E = 2.4
*->Gsytftvtatdgsg<-*
G+yt+++t++dg +
gi|1961926 894 GAYTARLTVSDGIN 907
Peptidase_S11: domain 1 of 1, from 906 to 930: score 1.3, E = 5.2
CS XXXX----.--SSSEEEEEETTT--
*->aatavsapleIaAksAilvDynTGk<-*
+ t+ s+p++Ia +sA +v+ +T++
gi|1961926 906 INTTNSEPIQIAVGSAPVVNITTNQ 930
TNV_CP: domain 1 of 1, from 926 to 936: score -0.2, E = 9.9
CS -SS-EE...EE
*->iTtSqnSGFfR<-*
iTt q+SGFfR
gi|1961926 926 ITTNQSSGFFR 936
PKD: domain 2 of 2, from 929 to 962: score 2.0, E = 4.4
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEEEE-
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsysWdF<-*
++s +++ +get t ta+++ d++ + sy+Wd+
gi|1961926 929 NQSS------GFFRAGETLTATATATDDGP-LDESSYEWDV 962
DUF2134: domain 1 of 1, from 931 to 947: score 1.5, E = 6.9
*->agilGilfGlppsrtlsAtAtA<-*
++++++ ++ tl+AtAtA
gi|1961926 931 SSGFFR-----AGETLTATATA 947
NPCBM_assoc: domain 1 of 1, from 935 to 952: score 2.0, E = 8.1
*->vvaGrtvtvtatftndgt<-*
aG+t t tat+t+dg+
gi|1961926 935 FRAGETLTATATATDDGP 952
Chlam_PMP: domain 2 of 2, from 1025 to 1040: score 5.6, E = 3.1
*->ditFsgNsaaggGGAiyas<-*
d+tF++N+ GG+i +
gi|1961926 1025 DLTFNSNL---PGGGIDLT 1040
efhand_Ca_insen: domain 1 of 1, from 1085 to 1093: score 6.5, E = 0.26
*->DtdTaEQVi<-*
Dtd+aEQVi
gi|1961926 1085 DTDSAEQVI 1093
Flexi_CP: domain 1 of 1, from 1105 to 1120: score 0.9, E = 9.6
*->DgVlnpAAlqPpeGLi<-*
++ +n+AA+ P++GL+
gi|1961926 1105 NYINNGAAPLPSDGLV 1120
SdiA-regulated: domain 1 of 1, from 1167 to 1179: score 4.1, E = 1.1
*->llEldleGevvsf<-*
++Eld +G+++s+
gi|1961926 1167 VIELDGDGDQLSR 1179
PG_binding_1: domain 1 of 2, from 1317 to 1351: score 2.4, E = 11
CS BSHHHHHHHHHT..TT-S -..--SSB--H HHHH
*->sgedVkelQqyLkrlGyy...gsppvDGyfGp.TeeA<-*
s+++ +++Q yL+ ++ +++g ++ ++ T+ A
gi|1961926 1317 SETEQQQVQSYLQDKYFGstdG--QPVAALDNaTTTA 1351
Me-amine-dh_H: domain 1 of 2, from 1361 to 1379: score 1.9, E = 1.6
CS EEEEE----SS--EEEE--
*->elssVdqLGrgPqviltaD<-*
el s d+LG P+ i+ D
gi|1961926 1361 ELLSNDELGDTPTTITDVD 1379
DUF2402: domain 1 of 1, from 1467 to 1497: score 1.9, E = 9.2
*->dgpVtLvLlkGpstntldpvsTIassipnsGsYtWtv<-*
d+p+t++ ++ st +++I+ +++ GsYt t+
gi|1961926 1467 DEPTTITAVDTTSTE----GGVIVDNAD--GSYTYTP 1497
VirC1: domain 1 of 1, from 1504 to 1519: score 0.6, E = 6.3
*->LeeFDYALADtrGGss<-*
++ FDY +ADt G ss
gi|1961926 1504 IDSFDYTIADTDGDSS 1519
SoxZ: domain 1 of 3, from 1510 to 1527: score 5.1, E = 0.52
CS EEEETTS-EEEEEEEE--
*->sWtDnkGssetaeakItv<-*
++ D +G+s ta+++++v
gi|1961926 1510 TIADTDGDSSTATVSVEV 1527
Cadherin: domain 1 of 3, from 1513 to 1528: score 0.9, E = 15
CS --.........S---EEEE--EEE-
*->DadpllasgggpplsstatvtitVl<-*
D d + sstatv ++V
gi|1961926 1513 DTD---------GDSSTATVSVEVV 1528
HipA_N: domain 1 of 1, from 1600 to 1608: score -0.4, E = 9.5
*->AlvvkRFDR<-*
A+ +RFD+
gi|1961926 1600 AFSFERFDY 1608
Dymeclin: domain 1 of 1, from 1610 to 1626: score -1.3, E = 9.6
*->sGvhFnpssIklfpvds<-*
sG+hFn ++ ++f+v +
gi|1961926 1610 SGLHFNGDVNAGFTVTG 1626
Nitro_FeMo-Co: domain 1 of 2, from 1630 to 1639: score 1.0, E = 11
CS TTSBB-SBTT
*->dgsrVnqHFG<-*
dg+ ++q FG
gi|1961926 1630 DGGEISQRFG 1639
DUF1999: domain 1 of 2, from 1662 to 1680: score 2.3, E = 2.3
*->AVihLGtRaarapgkkllr<-*
AV+ LG R a+ ++ + +
gi|1961926 1662 AVRFLGDRIATSETDTITQ 1680
Lin0512_fam: domain 1 of 1, from 1770 to 1785: score 1.5, E = 6.6
*->dkgDtivIAnAaVeVg<-*
d++++i +A++ VeV
gi|1961926 1770 DANGDISVATVTVEVK 1785
Staphylokinase: domain 1 of 1, from 1794 to 1829: score 1.7, E = 7.6
CS CSESCCCSSEEEEEEEEEEETTS-CCEEEEEEEEEEXTTSEEEH
*->npaesvnteykvsfnvkgvDldfnellvdqYhlgtllsgktltk<-*
+ a+s++te++v ++ + vDl +n l+d ++t+t+
gi|1961926 1794 AVADSATTEQDVAVVLNAVDLLSNDDLGD--------APTTITA 1829
Me-amine-dh_H: domain 2 of 2, from 1818 to 1831: score 2.3, E = 1.2
CS ----SS--EEEE--
*->dqLGrgPqviltaD<-*
d+LG +P+ i+ D
gi|1961926 1818 DDLGDAPTTITAVD 1831
vATP-synt_E: domain 1 of 1, from 1825 to 1847: score 3.0, E = 1
*->tvetigdnedfLppGPksdkhGidciGGVvlegedGk<-*
t++t++d+ +++GG ++ ++dG+
gi|1961926 1825 TTITAVDT--------------ASVSGGAIVDNADGT 1847
DJ-1_PfpI: domain 1 of 1, from 1829 to 1866: score 1.5, E = 5.5
CS EEEEEESSTTC-..-EEE-TTS......TSCHEEECSEEGGGHTGGG
*->evtvvspnkgkgdcvevkgkrgggaqyekggvkvtadkslddvnadd
+v+++s++ g+ +v + +g ++ t+++ + + ++
gi|1961926 1829 AVDTASVSGGA----IVDNADG--------TYTYTPANGFIGQDT-- 1861
CS ...ESEEE
aAayDalv<-*
+D ++
gi|1961926 1862 ---FDYVI 1866
SoxZ: domain 2 of 3, from 1860 to 1882: score 3.6, E = 1.5
CS E.EEEEEEETTS-EEEEEEEE--
*->delkfsWtDnkGssetaeakItv<-*
d++ ++tD +G+s ta+++++v
gi|1961926 1860 DTFDYVITDADGDSSTATVSVNV 1882
Cadherin: domain 2 of 3, from 1865 to 1883: score 5.0, E = 1
CS E----.........S---EEEE--EEE-
*->eAtDadpllasgggpplsstatvtitVl<-*
+ tDad + sstatv ++V
gi|1961926 1865 VITDAD---------GDSSTATVSVNVV 1883
DUF266: domain 1 of 1, from 1955 to 1970: score 1.3, E = 3.4
*->LLnmldlpsgnaNRTv<-*
LLn+ +lp++naNR++
gi|1961926 1955 LLNLNGLPTENANRSL 1970
PG_binding_1: domain 2 of 2, from 2092 to 2114: score 0.6, E = 35
CS BSHHHHHHHHHT..TT-S-..--SSB
*->sgedVkelQqyLkrlGyygsppvDGy<-*
s++++++++ yL+ ++ g +v+G+
gi|1961926 2092 SDTERQQVEGYLQDKYF-G--SVNGQ 2114
Pox_N2L: domain 1 of 1, from 2095 to 2108: score 2.3, E = 2.1
*->krkeFkdYvedkYp<-*
+r+ + Y+ dkY+
gi|1961926 2095 ERQQVEGYLQDKYF 2108
PA26: domain 1 of 1, from 2173 to 2198: score 0.3, E = 3.5
*->srgpsaFipekevlsqdcfaatqtga<-*
+++p+++ + qd fa t t a
gi|1961926 2173 VDDTIDYVPDEGFVGQDSFAYTITDA 2198
SoxZ: domain 3 of 3, from 2194 to 2211: score 2.8, E = 2.8
CS EEEETTS-EEEEEEEE--
*->sWtDnkGssetaeakItv<-*
++tD +G++ ta ++++v
gi|1961926 2194 TITDADGDTSTANVTVEV 2211
Cadherin: domain 3 of 3, from 2196 to 2212: score 5.3, E = 0.86
CS ---.........S---EEEE--EEE-
*->tDadpllasgggpplsstatvtitVl<-*
tDad + +sta vt++V+
gi|1961926 2196 TDAD---------GDTSTANVTVEVT 2212
DUF2345: domain 1 of 1, from 2243 to 2260: score 1.7, E = 6.2
*->gggtgganpfpefaqPll<-*
+ + g++n+ +f++P+l
gi|1961926 2243 ADQSGSGNDLIGFGDPML 2260
DUF2025: domain 1 of 1, from 2288 to 2299: score 4.0, E = 1.2
*->DLPEIeAqRsll<-*
DLPE +A+Rsl
gi|1961926 2288 DLPEGNAERSLF 2299
DUF490: domain 1 of 1, from 2320 to 2353: score -0.2, E = 9.4
*->ldglsatglgggGtltasGtldlaadlpadLtikgvad<-*
++++a ++++Gtl ++G ++ +d++ ++t +g d
gi|1961926 2320 NRAFGAV-TDSDGTLMVQGWGGM-NDFDSNVTGTG--D 2353
DUF823: domain 1 of 1, from 2325 to 2333: score 1.2, E = 2.9
*->GvTgAdGta<-*
+vT++dGt+
gi|1961926 2325 AVTDSDGTL 2333
DUF1556: domain 1 of 1, from 2442 to 2451: score 1.3, E = 8.8
*->rstSslplan<-*
+st+++++an
gi|1961926 2442 QSTAITDGAN 2451
Nitro_FeMo-Co: domain 2 of 2, from 2569 to 2588: score 3.2, E = 2.4
CS TTSBB-SBTTT-SEEEEEEE
*->dgsrVnqHFGrAprFaIYev<-*
dg+ ++q FG A+ +e+
gi|1961926 2569 DGGEISQRFGPATSLDTFET 2588
DUF1222: domain 1 of 1, from 2574 to 2585: score -0.9, E = 7.7
*->veeYfPavsldd<-*
+ +++Pa+sld+
gi|1961926 2574 SQRFGPATSLDT 2585
DUF1999: domain 2 of 2, from 2601 to 2619: score 2.3, E = 2.3
*->AVihLGtRaarapgkkllr<-*
AV+ LG R a+ ++ + +
gi|1961926 2601 AVRFLGDRIATSETDTITQ 2619
//