hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196254376.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|196254376|ref|ZP_03152915.1|
Accession: [none]
Description: Na-Ca exchanger/integrin-beta4 [Cyanothece sp. PCC 7822]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LVIVD LVIVD repeat 671.7 6.7e-199 14
HemolysinCabind Hemolysin-type calcium-binding repeat 66.7 4.9e-19 5
Calx-beta Calx-beta domain 42.2 9.4e-11 2
Peptidase_M10_C Peptidase M10 serralysin C terminal 15.2 0.00045 1
NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate de 3.4 1.3 1
DUF291 Domain of unknown function 5.1 1.6 1
Pneumo_NS1 Pneumovirus NS1 protein 2.9 2 1
SpoA Surface presentation of antigens (SPO 4.3 2.9 1
BSRF1 BSRF1-like protein 1.8 3.9 1
FDX-ACB Ferredoxin-fold anticodon binding dom 1.6 6.6 1
Bac_small_YrzI Probable sporulation protein (Bac_sma 3.2 6.7 1
Arg_repressor Arginine repressor, DNA binding domai 2.5 6.9 1
Beta_propel Beta propeller domain -0.8 7.1 1
FlgN FlgN protein 1.4 7.3 1
Pkinase_C Protein kinase C terminal domain 2.8 7.6 1
Mu_transposase Bacteriophage Mu transposase -0.2 7.6 1
DUF89 Protein of unknown function DUF89 -0.5 7.7 1
DUF1805 Domain of unknown function (DUF1805) 1.8 8 1
Plasmid_stabil Plasmid stabilisation system protein 1.9 8.2 1
FlgD Flagellar hook capping protein 0.8 8.5 1
Lipase_3 Lipase (class 3) 0.3 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Plasmid_stabil 1/1 53 72 .. 98 117 .] 1.9 8.2
Pneumo_NS1 1/1 92 112 .. 116 136 .] 2.9 2
DUF89 1/1 121 136 .. 396 411 .] -0.5 7.7
DUF1805 1/1 123 136 .. 55 68 .] 1.8 8
FDX-ACB 1/1 130 145 .. 79 94 .] 1.6 6.6
NAD_Gly3P_dh_N 1/1 163 183 .. 151 173 .] 3.4 1.3
LVIVD 1/14 201 238 .. 1 42 [] 47.9 4.2e-13
LVIVD 2/14 239 280 .. 1 42 [] 63.1 1.6e-17
Beta_propel 1/1 261 283 .. 142 164 .. -0.8 7.1
LVIVD 3/14 281 322 .. 1 42 [] 61.5 4.7e-17
LVIVD 4/14 323 364 .. 1 42 [] 62.8 1.9e-17
LVIVD 5/14 365 406 .. 1 42 [] 65.5 3e-18
LVIVD 6/14 407 448 .. 1 42 [] 58.9 2.6e-16
LVIVD 7/14 449 490 .. 1 42 [] 43.1 1e-11
SpoA 1/1 464 480 .. 62 77 .] 4.3 2.9
Pkinase_C 1/1 478 490 .. 1 13 [. 2.8 7.6
LVIVD 8/14 491 532 .. 1 42 [] 58.7 3e-16
BSRF1 1/1 532 539 .. 155 162 .] 1.8 3.9
LVIVD 9/14 533 573 .. 1 42 [] 39.8 1e-10
LVIVD 10/14 575 615 .. 1 42 [] 53.6 9.4e-15
LVIVD 11/14 617 657 .. 1 42 [] 34.6 3.1e-09
Bac_small_YrzI 1/1 651 659 .. 43 51 .] 3.2 6.7
LVIVD 12/14 662 702 .. 1 42 [] 29.6 9.2e-08
LVIVD 13/14 704 744 .. 1 42 [] 33.7 6e-09
LVIVD 14/14 746 775 .. 1 30 [. 18.9 0.00012
FlgD 1/1 792 803 .. 139 155 .] 0.8 8.5
Calx-beta 1/2 816 875 .. 54 109 .] 5.1 1.1
DUF291 1/1 855 875 .. 1 26 [. 5.1 1.6
Calx-beta 2/2 888 986 .. 1 109 [] 37.1 2.3e-09
HemolysinCabind 1/5 1032 1040 .. 10 18 .] 0.4 60
HemolysinCabind 2/5 1041 1058 .. 1 18 [] 16.9 0.00058
Arg_repressor 1/1 1052 1068 .. 56 72 .] 2.5 6.9
Lipase_3 1/1 1062 1096 .. 1 49 [. 0.3 8.8
Peptidase_M10_C 1/1 1077 1207 .. 40 105 .. 15.2 0.00045
HemolysinCabind 3/5 1122 1139 .. 1 18 [] 12.1 0.016
HemolysinCabind 4/5 1140 1157 .. 1 18 [] 17.8 0.00032
HemolysinCabind 5/5 1158 1175 .. 1 18 [] 19.4 0.0001
Mu_transposase 1/1 1160 1178 .. 84 101 .. -0.2 7.6
FlgN 1/1 1245 1261 .. 134 150 .] 1.4 7.3
Alignments of top-scoring domains:
Plasmid_stabil: domain 1 of 1, from 53 to 72: score 1.9, E = 8.2
CS .ET..TEEEEEEEE-TTTT-
*->gdddelvvlilrvlHrrrdy<-*
+ d ++++ i vl++r+d
gi|1962543 53 DTDTDGIEQITEVLRHRQDI 72
Pneumo_NS1: domain 1 of 1, from 92 to 112: score 2.9, E = 2
*->kLsDselakYsnqLseLLGld<-*
+Ls ++lakY n L e G+
gi|1962543 92 QLSLATLAKYENSLKEWFGVT 112
DUF89: domain 1 of 1, from 121 to 136: score -0.5, E = 7.7
CS -HHHHHHHT--TT-EE
*->cdvvAgllGvgvgekl<-*
c v Ag+ G+++ ekl
gi|1962543 121 CNVAAGDAGEELIEKL 136
DUF1805: domain 1 of 1, from 123 to 136: score 1.8, E = 8
CS --TT-BHHHHGGGG
*->ikpGMtGrEALekl<-*
+ G+ G+E +ekl
gi|1962543 123 VAAGDAGEELIEKL 136
FDX-ACB: domain 1 of 1, from 130 to 145: score 1.6, E = 6.6
CS HHHHHHHHTT.T-EES
*->ekiveaLekkfgAeLR<-*
e+++e+L + gA++R
gi|1962543 130 EELIEKLHQLTGATIR 145
NAD_Gly3P_dh_N: domain 1 of 1, from 163 to 183: score 3.4, E = 1.3
CS HHCCCEECCECEEEESSTCCCCC
*->EVAkglpTavvvAsreedqqaae<-*
EV++g+ +++++A+ d+++ae
gi|1962543 163 EVTVGQNSSASLAF--SDESLAE 183
LVIVD: domain 1 of 14, from 201 to 238: score 47.9, E = 4.2e-13
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+a dv++ GNYAY+ ++ L IVDISNPS P+lkg yd
gi|1962543 201 --SANDVTIVGNYAYIV--GDTLDIVDISNPSAPVLKGTYDN 238
LVIVD: domain 2 of 14, from 239 to 280: score 63.1, E = 1.6e-17
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+G++ d+ V GN+AY A+++ gL I+DIS+PS P+lkg ydt
gi|1962543 239 PGSILDIQVVGNFAYLANANWGLYIIDISDPSAPVLKGTYDT 280
Beta_propel: domain 1 of 1, from 261 to 283: score -0.8, E = 7.1
*->atiYDiSDpanPkvvrelelnGs<-*
++i DiSDp++P ++ +++ +Gs
gi|1962543 261 LYIIDISDPSAPVLKGTYDTPGS 283
LVIVD: domain 3 of 14, from 281 to 322: score 61.5, E = 4.7e-17
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+G+a++v+V G+ AYVAd+ gL I+ ISNPS Pi+kgsydt
gi|1962543 281 PGSAWGVKVAGDLAYVADDYLGLQIINISNPSAPIFKGSYDT 322
LVIVD: domain 4 of 14, from 323 to 364: score 62.8, E = 1.9e-17
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+G+aq+v V G AYVAdg gL I+DI+NPS Pi+kgsydt
gi|1962543 323 PGWAQGVQVVGQIAYVADGFSGLQIIDITNPSAPIFKGSYDT 364
LVIVD: domain 5 of 14, from 365 to 406: score 65.5, E = 3e-18
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+G+aqdv V G AYVAdg gL I+DIS+PS Pi+kgsydt
gi|1962543 365 PGWAQDVQVVGQIAYVADGYSGLQIIDISDPSAPIFKGSYDT 406
LVIVD: domain 6 of 14, from 407 to 448: score 58.9, E = 2.6e-16
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+G+a +v V G AYVAdgd gL ++DI+NPS Pi+kgsydt
gi|1962543 407 PGNAVGVQVVGQIAYVADGDSGLQVIDITNPSAPIFKGSYDT 448
LVIVD: domain 7 of 14, from 449 to 490: score 43.1, E = 1e-11
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
G+a+++ V G AYV dg+ g I+D SN SsP+l ++yd
gi|1962543 449 LGWARGIQVVGQMAYVSDGNRGVQIIDLSNLSSPTLTSNYDP 490
SpoA: domain 1 of 1, from 464 to 480: score 4.3, E = 2.9
*->vvggrlavrIteii.pe<-*
v++g+++v+I+++ + +
gi|1962543 464 VSDGNRGVQIIDLSnLS 480
Pkinase_C: domain 1 of 1, from 478 to 490: score 2.8, E = 7.6
CS --SSTT--TTS-H
*->kvksptDTsNFDp<-*
+++spt TsN Dp
gi|1962543 478 NLSSPTLTSNYDP 490
LVIVD: domain 8 of 14, from 491 to 532: score 58.7, E = 3e-16
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
G+a+dv V G AY Adgd gL I+DI+NPSsP+ kgsy t
gi|1962543 491 SGSAKDVQVVGQIAYLADGDSGLQIIDITNPSSPVKKGSYRT 532
BSRF1: domain 1 of 1, from 532 to 539: score 1.8, E = 3.9
*->ttaWAqEI<-*
t+ WAq+I
gi|1962543 532 TANWAQNI 539
LVIVD: domain 9 of 14, from 533 to 573: score 39.8, E = 1e-10
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+ +aq++ V GN AYV + I+DISNP+ P+lkg y+
gi|1962543 533 ANWAQNIQVVGNLAYVTES-SAVEIIDISNPTTPVLKGTYNN 573
LVIVD: domain 10 of 14, from 575 to 615: score 53.6, E = 9.4e-15
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
G+ +d++V GN AY A g++gL I+DI+NPSsP+lkg y+
gi|1962543 575 VGIPSDIEVVGNWAYLA-GNQGLQIIDITNPSSPVLKGTYNN 615
LVIVD: domain 11 of 14, from 617 to 657: score 34.6, E = 3.1e-09
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
G d+ V G AYV gd L I+DISNPSsP lk+sy
gi|1962543 617 FGPQPDLQVVGQSAYVV-GDSRLDIIDISNPSSPWLKSSYYD 657
Bac_small_YrzI: domain 1 of 1, from 651 to 659: score 3.2, E = 6.7
*->LKssYythl<-*
LKssYy+++
gi|1962543 651 LKSSYYDFF 659
LVIVD: domain 12 of 14, from 662 to 702: score 29.6, E = 9.2e-08
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
+ + +++ V GN AYVA gd L I+D+SN sP+lkg y+
gi|1962543 662 PPTQKSLQVVGNIAYVA-GDSTLKIIDVSNGLSPVLKGTYNR 702
LVIVD: domain 13 of 14, from 704 to 744: score 33.7, E = 6e-09
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISNPSsPilkgsydt<-*
G ++ V G+ A+V+ g+++L I+DISNPSsPi k+ y+
gi|1962543 704 FGPQPSLQVVGKLAFVG-GNQELEIIDISNPSSPISKATYNN 744
LVIVD: domain 14 of 14, from 746 to 775: score 18.9, E = 0.00012
*->gGdaqdvsVsGNYAYVAdgdngLvIVDISN<-*
G + d+ + ++AY A+++ gL I+D+S+
gi|1962543 746 SGFINDIQIVDDFAYLANDESGLQILDVSD 775
FlgD: domain 1 of 1, from 792 to 803: score 0.8, E = 8.5
*->kDaaGqvvnvelVrtid<-*
+D++G++ V+t++
gi|1962543 792 EDGTGNL-----VYTFT 803
Calx-beta: domain 1 of 2, from 816 to 875: score 5.1, E = 1.1
*->rTeDGTAtaGPgsDYept........egtiLtFgPgedtekcinvti
+T+ GTA+ + +DY+ t+ ++ + ++g+ +tF +g ++ + +
gi|1962543 816 FTVGGTANYN--DDYTQTgatsfsasTGS-VTFAAGS-SKATLIIDP 858
iDDdvyEgdEnFfvrLs<-*
D E+dE+ +++L
gi|1962543 859 TADINKEEDETVTLNLN 875
DUF291: domain 1 of 1, from 855 to 875: score 5.1, E = 1.6
*->sIsPtsatFDKngtkqaDvsvtltlN<-*
+I+Pt+ D n + +D +vtl+lN
gi|1962543 855 IIDPTA---DINKE--EDETVTLNLN 875
Calx-beta: domain 2 of 2, from 888 to 986: score 37.1, E = 2.3e-09
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
+t tI+ dd ++++ v + ++n + + ++V++ +
gi|1962543 888 VTGTISNDDFYPILSVN-NVTVL--ENNEAYAILTVTLNQA---SSQ 928
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+ +V+y+T TAt DY+p + t L+ +++ t ++i++D++
gi|1962543 929 DISVNYTTTPVTATPE--LDYTPISDT-LVIEANS-TTASLFIPIVNDNI 974
yEgdEnFfvrLs<-*
E dE+F v s
gi|1962543 975 SEADETFKVTFS 986
HemolysinCabind: domain 1 of 5, from 1032 to 1040: score 0.4, E = 60
CS EEESSCGEE
*->yGgaGnDtl<-*
+G++Gn++l
gi|1962543 1032 TGNSGNNLL 1040
HemolysinCabind: domain 2 of 5, from 1041 to 1058: score 16.9, E = 0.00058
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ Gn++L Gg+GnD +
gi|1962543 1041 IGNSGNNVLAGGNGNDSY 1058
Arg_repressor: domain 1 of 1, from 1052 to 1068: score 2.5, E = 6.9
CS .-SSS-EEEE-TTSTTS
*->GaengryrYsLpsetev<-*
G++n++y+Ys+ s +
gi|1962543 1052 GNGNDSYKYSVISQLGS 1068
Lipase_3: domain 1 of 1, from 1062 to 1096: score 0.3, E = 8.8
CS EEEE--SS..SHHHHHHHT--SEEE-TTTTT...........T-EEE
*->vvafRGTnlftilewiadldfslvpydpfflgansndtgvkeggkvh
v++ G+ ti+e + +++l + ++ ++kv+
gi|1962543 1062 VISQLGSD--TISETATGGTDTLDFSGTLV------------DVKVN 1094
CS HH
kG<-*
G
gi|1962543 1095 LG 1096
Peptidase_M10_C: domain 1 of 1, from 1077 to 1207: score 15.2, E = 0.00045
CS SSS-EEE-TT--S--EEE-STT-EEB-TT-BS-EEE-TT----EE
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->gGndtlDFsGfsqnqrinLnegsfsDvGGlkgnvsiAkGvtiEnA..
gG+dtlDFsG + ++nL + v ++ + + +iEn +
gi|1962543 1077 GGTDTLDFSGTLVDVKVNLGTTTSQTVVTNNLKLTLSANNVIENIig 1123
CS
RF
..................................................
++++++ +++ +++ ++++++++ ++++++++ ++ ++++ +++ +++
gi|1962543 1124 gsgsdrlignslnntltggdgndnlsggggndsldgaagndnltggagnd 1173
CS TTB-EEETT--TTTSEEE-HH
RF xxxxxxxxxxxxxxxxxxxxx
.............saapdtirDFqsGeDkiDlsa<-*
+ ++++ ++ dti DF+s Dki ls+
gi|1962543 1174 rylyqtgrafvssDLGVDTINDFTSVADKIVLSK 1207
HemolysinCabind: domain 3 of 5, from 1122 to 1139: score 12.1, E = 0.016
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G D+L G++ n+tl
gi|1962543 1122 IGGSGSDRLIGNSLNNTL 1139
HemolysinCabind: domain 4 of 5, from 1140 to 1157: score 17.8, E = 0.00032
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnD L+Gg+GnD l
gi|1962543 1140 TGGDGNDNLSGGGGNDSL 1157
HemolysinCabind: domain 5 of 5, from 1158 to 1175: score 19.4, E = 0.0001
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G aGnD L+GgaGnD++
gi|1962543 1158 DGAAGNDNLTGGAGNDRY 1175
Mu_transposase: domain 1 of 1, from 1160 to 1178: score -0.2, E = 7.6
CS STTTTTTS---TT TTBS-
*->aAANKklTGGvkN.RYRyk<-*
aA N lTGG+ N+RY y+
gi|1962543 1160 AAGNDNLTGGAGNdRYLYQ 1178
FlgN: domain 1 of 1, from 1245 to 1261: score 1.4, E = 7.3
*->srgassttYgadGqtst<-*
s + +s++Y+++G t++
gi|1962543 1245 SSSSGSLFYNQNGATAG 1261
//