hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 209492215.fa
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Query sequence: gi|209492215|gb|EDZ92562.1|
Accession: [none]
Description: polymorphic outer membrane protein [Arthrospira maxima CS-328]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Chlam_PMP Chlamydia polymorphic membrane protei 152.4 1.4e-42 20
DUF1869 Domain of unknown function (DUF1869) 2.4 0.39 1
Glyco_hydro_20b Glycosyl hydrolase family 20, domain 4.3 0.61 1
NosD Periplasmic copper-binding protein (N 5.7 1 1
PTPS 6-pyruvoyl tetrahydropterin synthase 2.3 1.2 1
AreA_N Nitrogen regulatory protein AreA N te 2.4 1.4 1
Glyco_hydro_79n Glycosyl hydrolase family 79, N-termi 1.1 2 1
Cuticle_1 Crustacean cuticle protein repeat 3.2 2.4 1
ETF_alpha Electron transfer flavoprotein FAD-bi 3.4 2.5 1
Ricin_B_lectin Ricin-type beta-trefoil lectin domain 1.6 2.7 1
BcsB Bacterial cellulose synthase subunit 0.7 3.8 1
Fil_haemagg Haemagluttinin repeat 3.0 4 1
CX CX module 2.1 4.2 1
DUF1441 Protein of unknown function (DUF1441) 2.3 4.4 1
ARM_1 Adhesion regulating molecule conserve 0.6 4.5 1
Corona_NS3b ORF3b coronavirus protein -0.3 4.9 1
IFP_35_N Interferon-induced 35 kDa protein (IF 1.5 5.3 1
Lact_bio_phlase Lacto-N-biose phosphorylase -0.7 5.5 1
CitF Citrate lyase, alpha subunit (CitF) -0.2 5.6 1
3HBOH 3HB-oligomer hydrolase (3HBOH) -0.5 6.4 1
TIR TIR domain 0.6 6.7 1
Sec_GG SecD/SecF GG Motif 2.3 9 1
Rubella_Capsid Rubella capsid protein -1.5 9.2 1
DUF748 Domain of Unknown Function (DUF748) 1.4 9.3 1
DUF756 Domain of unknown function (DUF756) 2.2 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIR 1/1 99 112 .. 137 150 .] 0.6 6.7
Glyco_hydro_79n 1/1 111 132 .. 1 22 [. 1.1 2
DUF1441 1/1 132 141 .. 1 13 [. 2.3 4.4
ETF_alpha 1/1 132 154 .. 26 48 .. 3.4 2.5
PTPS 1/1 171 181 .. 134 144 .] 2.3 1.2
DUF1869 1/1 179 191 .. 1 14 [. 2.4 0.39
CitF 1/1 196 213 .. 1 24 [. -0.2 5.6
AreA_N 1/1 242 254 .. 1 14 [. 2.4 1.4
Rubella_Capsid 1/1 294 306 .. 1 13 [. -1.5 9.2
Chlam_PMP 1/20 304 321 .. 1 19 [] 0.7 68
Chlam_PMP 2/20 330 353 .. 1 19 [] 6.8 1.5
Chlam_PMP 3/20 362 379 .. 1 19 [] 11.7 0.069
Chlam_PMP 4/20 387 414 .. 1 19 [] 11.1 0.099
Cuticle_1 1/1 406 417 .. 1 12 [. 3.2 2.4
Chlam_PMP 5/20 436 454 .. 1 19 [] 9.8 0.22
Corona_NS3b 1/1 449 471 .. 1 23 [. -0.3 4.9
Chlam_PMP 6/20 465 489 .. 1 19 [] 1.5 41
Chlam_PMP 7/20 497 515 .. 1 19 [] 12.9 0.031
Chlam_PMP 8/20 524 548 .. 1 19 [] 8.3 0.59
CX 1/1 544 557 .. 37 50 .. 2.1 4.2
Chlam_PMP 9/20 558 576 .. 1 19 [] 9.2 0.33
NosD 1/1 594 612 .. 1 19 [. 5.7 1
Lact_bio_phlase 1/1 607 631 .. 755 779 .] -0.7 5.5
Glyco_hydro_20b 1/1 617 644 .. 1 31 [. 4.3 0.61
ARM_1 1/1 721 740 .. 362 381 .] 0.6 4.5
BcsB 1/1 723 752 .. 1 31 [. 0.7 3.8
Sec_GG 1/1 726 750 .. 1 30 [. 2.3 9
3HBOH 1/1 741 755 .. 707 721 .] -0.5 6.4
Chlam_PMP 10/20 768 814 .. 1 19 [] 5.4 3.6
DUF748 1/1 788 802 .. 1 15 [. 1.4 9.3
Chlam_PMP 11/20 823 841 .. 1 19 [] 17.8 0.0015
Fil_haemagg 1/1 841 907 .. 1 75 [] 3.0 4
Chlam_PMP 12/20 850 873 .. 1 19 [] 1.0 54
Chlam_PMP 13/20 882 899 .. 1 19 [] 5.8 2.7
Chlam_PMP 14/20 907 939 .. 1 19 [] 9.8 0.22
Chlam_PMP 15/20 956 974 .. 1 19 [] 9.0 0.37
Chlam_PMP 16/20 985 1008 .. 1 17 [. 6.5 1.8
Ricin_B_lectin 1/1 997 1018 .. 115 140 .] 1.6 2.7
Chlam_PMP 17/20 1022 1038 .. 1 17 [. 9.0 0.36
Chlam_PMP 18/20 1048 1067 .. 1 15 [. 8.3 0.59
Chlam_PMP 19/20 1078 1096 .. 1 19 [] 6.3 2
Chlam_PMP 20/20 1105 1135 .. 1 15 [. 1.5 41
IFP_35_N 1/1 1175 1181 .. 82 88 .] 1.5 5.3
DUF756 1/1 1207 1220 .. 81 94 .] 2.2 9.4
Alignments of top-scoring domains:
TIR: domain 1 of 1, from 99 to 112: score 0.6, E = 6.7
CS .GGCCHHHHHHHHH
*->qsdrikfWkkalya<-*
+sdr + W+kal++
gi|2094922 99 KSDRLHGWRKALSE 112
Glyco_hydro_79n: domain 1 of 1, from 111 to 132: score 1.1, E = 2
*->lergtivaygelrvggtdedFv<-*
e +t+++yg + ++t ++F+
gi|2094922 111 SETATLFVYGCRVAAETGTNFI 132
DUF1441: domain 1 of 1, from 132 to 141: score 2.3, E = 4.4
*->klNIsQLAAlsGL<-*
I+QLA+++G+
gi|2094922 132 ---INQLAEITGA 141
ETF_alpha: domain 1 of 1, from 132 to 154: score 3.4, E = 2.5
CS HHHHHHHHT-EEEE-HHHHHTTS
*->leeLAdvLGAeVGaSRaaVdaGW<-*
+++LA+ GA+V+aS +V aG+
gi|2094922 132 INQLAEITGATVAASGEIVGAGY 154
PTPS: domain 1 of 1, from 171 to 181: score 2.3, E = 1.2
*->TpkNIviYrGe<-*
T k+I +YrG
gi|2094922 171 TEKAIASYRGT 181
DUF1869: domain 1 of 1, from 179 to 191: score 2.4, E = 0.39
*->nnkaty.llTVTNNs<-*
++t++++TVTNN+
gi|2094922 179 --RGTFgTITVTNNN 191
CitF: domain 1 of 1, from 196 to 213: score -0.2, E = 5.6
*->rKLvdSleEAIektGLkDGMTiSF<-*
+Sl+EAI DG Ti F
gi|2094922 196 ----GSLREAIANA--SDGYTITF 213
AreA_N: domain 1 of 1, from 242 to 254: score 2.4, E = 1.4
*->MsGltlgGGgpggv<-*
sGltl GGg +v
gi|2094922 242 -SGLTLSGGGNTRV 254
Rubella_Capsid: domain 1 of 1, from 294 to 306: score -1.5, E = 9.2
*->mAsttPitmEDLq<-*
mAs t +t+E q
gi|2094922 294 MASRTSLTLENSQ 306
Chlam_PMP: domain 1 of 20, from 304 to 321: score 0.7, E = 68
*->ditFsgNsaaggGGAiyas<-*
++ ++N+a ++ G+i++
gi|2094922 304 NSQVNNNRA-EFAGGILTG 321
Chlam_PMP: domain 2 of 20, from 330 to 353: score 6.8, E = 1.5
*->ditFsgNsa.....aggGGAiyas<-*
++ F+gN ++ +++ +gGGAi ++
gi|2094922 330 NSQFDGNDGtaggsERGGGAIATK 353
Chlam_PMP: domain 3 of 20, from 362 to 379: score 11.7, E = 0.069
*->ditFsgNsaaggGGAiyas<-*
d+tF++N++ +GGAi
gi|2094922 362 DSTFTNNKG-INGGAINHL 379
Chlam_PMP: domain 4 of 20, from 387 to 414: score 11.1, E = 0.099
*->ditFsgNsa.........aggGGAiyas<-*
++tF +N +++++ +++++g GGAi++
gi|2094922 387 GSTFRNNDStpgdlggdpSGYGGAIFTD 414
Cuticle_1: domain 1 of 1, from 406 to 417: score 3.2, E = 2.4
*->GpSGivtpDGrn<-*
G+ G +++DG n
gi|2094922 406 GYGGAIFTDGAN 417
Chlam_PMP: domain 5 of 20, from 436 to 454: score 9.8, E = 0.22
*->ditFsgNsaaggGGAiyas<-*
++ +++N++ag+GG+++
gi|2094922 436 NSLIEDNKGAGQGGGLFLY 454
Corona_NS3b: domain 1 of 1, from 449 to 471: score -0.3, E = 4.9
*->miGGLFLntL..sFvivsnHsivnn<-*
GGLFL ++ vi+ n i+nn
gi|2094922 449 --GGLFLYAYppDRVIIENSQIINN 471
Chlam_PMP: domain 6 of 20, from 465 to 489: score 1.5, E = 41
*->ditFsgNsa......aggGGAiyas<-*
++ + +N++ +++++ + GG++
gi|2094922 465 NSQIINNEVvessrgQALGGGLRHG 489
Chlam_PMP: domain 7 of 20, from 497 to 515: score 12.9, E = 0.031
*->ditFsgNsaaggGGAiyas<-*
++tF +N++ ++GG+++
gi|2094922 497 NTTFANNRSENQGGGLWIG 515
Chlam_PMP: domain 8 of 20, from 524 to 548: score 8.3, E = 0.59
*->ditFsgNsa......aggGGAiyas<-*
++t+sgN+a++ +++ g GG+i
gi|2094922 524 NTTISGNRAesadgsDGLGGGITFA 548
CX: domain 1 of 1, from 544 to 557: score 2.1, E = 4.2
*->nvtFdNGtkptsil<-*
++tF+NGt pt i+
gi|2094922 544 GITFANGTNPTNIT 557
Chlam_PMP: domain 9 of 20, from 558 to 576: score 9.2, E = 0.33
*->ditFsgNsaaggGGAiyas<-*
++t+ +N a+g+GG++++
gi|2094922 558 NTTIANNYAGGQGGGFWGG 576
NosD: domain 1 of 1, from 594 to 612: score 5.7, E = 1
*->nggntWnttktagtNIvGG<-*
n+gn Wn +gt++++G
gi|2094922 594 NRGNDWNINHHTGTTYNDG 612
Lact_bio_phlase: domain 1 of 1, from 607 to 631: score -0.7, E = 5.5
*->TtVyigdgrvetieLkAneilWfdi<-*
Tt +g+g +++ eL +n++l+ +
gi|2094922 607 TTYNDGGGNIQSNELNPNDTLITSN 631
Glyco_hydro_20b: domain 1 of 1, from 617 to 644: score 4.3, E = 0.61
CS EEEE--GG..G-EEEE-TTSS--TT-HHHHH
*->qlielapnGAnflitislpsaaqtscsllke<-*
q++el+pn + lit+++ +a+ + +++l+e
gi|2094922 617 QSNELNPN--DTLITSNVTLAD-PLLGDLQE 644
ARM_1: domain 1 of 1, from 721 to 740: score 0.6, E = 4.5
*->EAVaAAnkGDlEaFakALek<-*
EA+a A +GD Fa L+
gi|2094922 721 EAIANAASGDTITFAAELTG 740
BcsB: domain 1 of 1, from 723 to 752: score 0.7, E = 3.8
*->aadpasstrtltFrqLGapggpltLrGvdpe<-*
+a+ a+s++t+tF+ +g+++tL G + e
gi|2094922 723 IAN-AASGDTITFAAELTGGNTITLTGGQLE 752
Sec_GG: domain 1 of 1, from 726 to 750: score 2.3, E = 9
*->slsgkgrgerplnlGiDlkGGtrillkvdk<-*
++sg + +++ +l+GG i+l+ +
gi|2094922 726 AASGDT-----ITFAAELTGGNTITLTGGQ 750
3HBOH: domain 1 of 1, from 741 to 755: score -0.5, E = 6.4
*->AdaItvaaGaVqVPd<-*
+++It ++G+ +P
gi|2094922 741 GNTITLTGGQLEIPV 755
Chlam_PMP: domain 10 of 20, from 768 to 814: score 5.4, E = 3.6
*->ditFsgNsa............................aggGGAiyas
++t+sgN +++ ++++ ++++ + ++ + ++ ++++GG+i ++
gi|2094922 768 NLTISGNNIsrvfylnstsanptsltiqnltiangytPERGGGIATT 814
<-*
gi|2094922 - -
DUF748: domain 1 of 1, from 788 to 802: score 1.4, E = 9.3
*->kPldlvidalqLanG<-*
P l+i++l++anG
gi|2094922 788 NPTSLTIQNLTIANG 802
Chlam_PMP: domain 11 of 20, from 823 to 841: score 17.8, E = 0.0015
*->ditFsgNsaaggGGAiyas<-*
++tF++N a gGGAi++
gi|2094922 823 NVTFNDNVADQGGGAIFSA 841
Fil_haemagg: domain 1 of 1, from 841 to 907: score 3.0, E = 4
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EEES
*->vaaGaltlnaa......alggldlnnggtlsagggltltaagllnng
+ G+lt+n ++ ++++a +g d +++g+++ +g + + + g
gi|2094922 841 AFEGRLTVNESdfnrnkAIAGNDERGAGAIAFRGPNEIIVTDSDFIG 887
CS SE...................EEEEESS-EEEEE
gtliaggdlllaagalrnggdltltaaGdLdnsg<-*
+ i+g+ ++ + G+L++ +
gi|2094922 888 NEGINGA--------------AINSLNGRLTVEN 907
Chlam_PMP: domain 12 of 20, from 850 to 873: score 1.0, E = 54
*->ditFsgNsa.....aggGGAiyas<-*
+++F+ N+a +++ +g GAi +
gi|2094922 850 ESDFNRNKAiagndERGAGAIAFR 873
Chlam_PMP: domain 13 of 20, from 882 to 899: score 5.8, E = 2.7
*->ditFsgNsaaggGGAiyas<-*
d++F gN++ +G+Ai +
gi|2094922 882 DSDFIGNEG-INGAAINSL 899
Chlam_PMP: domain 14 of 20, from 907 to 939: score 9.8, E = 0.22
*->ditFsgNsa..............aggGGAiyas<-*
++ F +Ns++ ++++++++ g GGAiy+
gi|2094922 907 NSRFINNSTtaafydtgndnpslRGYGGAIYTD 939
Chlam_PMP: domain 15 of 20, from 956 to 974: score 9.0, E = 0.37
*->ditFsgNsaaggGGAiyas<-*
++ F+gNs+ g GGA y
gi|2094922 956 NSLFEGNSGRGEGGAAYLY 974
Chlam_PMP: domain 16 of 20, from 985 to 1008: score 6.5, E = 1.8
*->ditFsgNsa.......aggGGAiy<-*
+++F +N++ + +++++g+GGAi+
gi|2094922 985 SSVFKDNEIlplpggnGGNGGAIV 1008
Ricin_B_lectin: domain 1 of 1, from 997 to 1018: score 1.6, E = 2.7
CS SSSS .STTSEEEE.E-..-S-GGG-E
*->agas.angtkvilwktCdwngsanQqW<-*
+g++++ng+++++ n+++nQ +
gi|2094922 997 PGGNgGNGGAIVQM-----NNGLNQGF 1018
Chlam_PMP: domain 17 of 20, from 1022 to 1038: score 9.0, E = 0.36
*->ditFsgNsaaggGGAiy<-*
++ F +N+aa++GG+i+
gi|2094922 1022 NTAFVNNTAANQGGGIW 1038
Chlam_PMP: domain 18 of 20, from 1048 to 1067: score 8.3, E = 0.59
*->ditFsgNsa.....aggGGA<-*
++tFsgN+a++ +++g+GGA
gi|2094922 1048 NTTFSGNRAeslttSGNGGA 1067
Chlam_PMP: domain 19 of 20, from 1078 to 1096: score 6.3, E = 2
*->ditFsgNsaaggGGAiyas<-*
++t+ +N a+ GG+i+as
gi|2094922 1078 NTTIAENYAGWVGGGIVAS 1096
Chlam_PMP: domain 20 of 20, from 1105 to 1135: score 1.5, E = 41
*->ditFsgNsa................aggGGA<-*
+++F +N+a++++++ + ++++++++++GG+
gi|2094922 1105 NTIFYKNTAdngtnnwgiqqhtnreLVDGGG 1135
IFP_35_N: domain 1 of 1, from 1175 to 1181: score 1.5, E = 5.3
*->cpLqeGs<-*
+pL+eGs
gi|2094922 1175 YPLLEGS 1181
DUF756: domain 1 of 1, from 1207 to 1220: score 2.2, E = 9.4
*->gpngpgFlRRFAGr<-*
g++ ++F R+F+G
gi|2094922 1207 GNGTDTFTRHFSGC 1220
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