hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            209870507.fa
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Query sequence: gi|209870507|pdb|3EEB|B
Accession:      [none]
Description:    Chain B, Structure Of The V. Cholerae Rtx Cysteine Protease Domain

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
FTP             Fungalysin/Thermolysin Propeptide Mot     3.5        4.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
FTP               1/1      58    78 ..    31    51 .]     3.5      4.1

Alignments of top-scoring domains:
FTP: domain 1 of 1, from 58 to 78: score 3.5, E = 4.1
                   *->geliVhvskdGkvksvsGdfs<-*
                      ++++V +++dG  + v+Gd s
  gi|2098705    58    SSVVVQLDSDGNYRVVYGDPS    78

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