hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 210085167.fa
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Query sequence: gi|210085167|gb|EEA33649.1|
Accession: [none]
Description: hypothetical protein BRAFLDRAFT_132232 [Branchiostoma floridae]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 73.3 2.4e-21 1
F-box F-box domain 26.7 1.3e-06 1
PH PH domain 22.8 7.9e-06 1
Gly_acyl_tr_N Aralkyl acyl-CoA:amino acid N-acyltra 8.0 0.046 1
TRAUB TRAUB (NUC102) domain 7.8 0.08 2
Dynamitin Dynamitin 5.7 0.17 1
WavE WavE lipopolysaccharide synthesis 2.7 0.76 1
CASP_C CASP C terminal 3.6 0.91 1
Dpy-30 Dpy-30 motif 6.3 0.97 1
Fes1 Nucleotide exchange factor Fes1 2.9 1.6 1
IL3 Interleukin-3 3.3 1.8 1
DUF1994 Domain of unknown function (DUF1994) 3.0 1.9 1
TPR_2 Tetratricopeptide repeat 5.4 2.2 1
DUF667 Protein of unknown function (DUF667) 2.0 2.7 1
DUF1292 Protein of unknown function (DUF1292) 2.8 3.7 1
TPR_3 Tetratricopeptide repeat 4.2 3.7 1
DASH_Duo1 DASH complex subunit Duo1 3.4 3.9 1
HCV_capsid Hepatitis C virus capsid protein 1.9 4 1
TPR_1 Tetratricopeptide repeat 4.3 4 1
PDEase_I 3'5'-cyclic nucleotide phosphodiester 0.0 4.3 1
DUF1170 Protein of unknown function (DUF1170) 1.3 5 1
Mcm10 Mcm10 replication factor -0.5 5.1 1
DUF1411 Protein of unknown function (DUF1411) 0.5 5.1 1
PH_2 Plant pleckstrin homology-like region 1.9 5.3 1
Calcipressin Calcipressin 0.9 5.8 1
6PGD 6-phosphogluconate dehydrogenase, C-t -1.1 5.9 1
PPTA Protein prenyltransferase alpha subun 3.5 5.9 1
DUF2581 Protein of unknown function (DUF2581) 1.8 6 1
DDT DDT domain 2.2 7.9 1
YadA YadA-like C-terminal region 1.4 8.3 1
Adeno_IVa2 Adenovirus IVa2 protein -0.6 8.4 1
Phi-29_GP16_7 Bacteriophage phi-29 early protein GP -0.3 8.4 1
TP6A_N Type IIB DNA topoisomerase 1.8 8.4 1
DUF1669 Protein of unknown function (DUF1669) -0.3 8.9 1
RWD RWD domain 1.4 9 1
DUF63 Membrane protein of unknown function -0.6 9.1 1
Androgen_recep Androgen receptor -1.7 9.2 1
GSPII_IJ Bacterial type II secretion system pr 1.6 9.4 1
PAS PAS fold 1.1 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Calcipressin 1/1 22 32 .. 265 275 .] 0.9 5.8
TRAUB 1/2 95 108 .. 74 87 .] 1.5 6.7
PH_2 1/1 106 113 .. 1 8 [. 1.9 5.3
TP6A_N 1/1 107 119 .. 67 79 .] 1.8 8.4
F-box 1/1 133 180 .. 1 46 [] 26.7 1.3e-06
GSPII_IJ 1/1 156 166 .. 35 45 .. 1.6 9.4
Androgen_recep 1/1 158 177 .. 441 460 .] -1.7 9.2
YadA 1/1 158 165 .. 73 80 .] 1.4 8.3
DUF1994 1/1 180 194 .. 166 180 .] 3.0 1.9
DASH_Duo1 1/1 222 236 .. 76 91 .] 3.4 3.9
HCV_capsid 1/1 266 277 .. 103 114 .] 1.9 4
TPR_3 1/1 278 294 .. 18 38 .] 4.2 3.7
DUF1292 1/1 280 289 .. 73 82 .] 2.8 3.7
DUF1170 1/1 311 331 .. 210 228 .] 1.3 5
TRAUB 2/2 375 389 .. 73 87 .] 6.3 0.23
PDEase_I 1/1 497 516 .. 237 257 .] 0.0 4.3
DUF63 1/1 504 511 .. 1 8 [. -0.6 9.1
Phi-29_GP16_7 1/1 538 548 .. 1 11 [. -0.3 8.4
Fes1 1/1 585 591 .. 1 11 [. 2.9 1.6
PPTA 1/1 600 617 .. 1 18 [. 3.5 5.9
DUF1669 1/1 613 629 .. 276 292 .. -0.3 8.9
PAS 1/1 621 690 .. 40 116 .. 1.1 9.7
Adeno_IVa2 1/1 630 664 .. 1 35 [. -0.6 8.4
Dpy-30 1/1 663 676 .. 29 42 .] 6.3 0.97
RhoGEF 1/1 690 873 .. 1 207 [] 73.3 2.4e-21
WavE 1/1 703 723 .. 332 352 .] 2.7 0.76
6PGD 1/1 704 712 .. 268 276 .. -1.1 5.9
DDT 1/1 733 744 .. 1 12 [. 2.2 7.9
TPR_1 1/1 785 804 .. 15 34 .] 4.3 4
TPR_2 1/1 785 804 .. 15 34 .] 5.4 2.2
Gly_acyl_tr_N 1/1 788 803 .. 192 207 .] 8.0 0.046
DUF2581 1/1 853 874 .. 126 148 .] 1.8 6
Dynamitin 1/1 854 875 .. 380 401 .] 5.7 0.17
CASP_C 1/1 864 886 .. 1 23 [. 3.6 0.91
IL3 1/1 865 874 .. 112 121 .] 3.3 1.8
DUF667 1/1 918 933 .. 175 190 .] 2.0 2.7
PH 1/1 935 1019 .. 21 92 .] 22.8 7.9e-06
Mcm10 1/1 949 964 .. 293 308 .. -0.5 5.1
DUF1411 1/1 969 977 .. 143 151 .] 0.5 5.1
RWD 1/1 1008 1018 .. 108 118 .] 1.4 9
Alignments of top-scoring domains:
Calcipressin: domain 1 of 1, from 22 to 32: score 0.9, E = 5.8
*->akivqTarPpr<-*
ak ++T+rP++
gi|2100851 22 AKVTPTRRPSS 32
TRAUB: domain 1 of 2, from 95 to 108: score 1.5, E = 6.7
*->WsDeqidELFasLF<-*
W+D q+ ++ a+ +
gi|2100851 95 WTDAQRKKFLATIL 108
PH_2: domain 1 of 1, from 106 to 113: score 1.9, E = 5.3
*->geLlkRtR<-*
++Llk+tR
gi|2100851 106 TILLKCTR 113
TP6A_N: domain 1 of 1, from 107 to 119: score 1.8, E = 8.4
CS HHHTS-GGGGTEE
*->illgvsRedLnil<-*
ill+++R+ L+++
gi|2100851 107 ILLKCTRSQLLFI 119
F-box: domain 1 of 1, from 133 to 180: score 26.7, E = 1.3e-06
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP l + I+s+Ldp++ +r++ VS++w+ l ++lw++k+
gi|2100851 133 DFTTVLPRFLSMYIFSFLDPRSMCRAAGVSWHWKFLTEQDpLWIpKC 179
CS H
l<-*
gi|2100851 180 V 180
GSPII_IJ: domain 1 of 1, from 156 to 166: score 1.6, E = 9.4
*->eslAGrrWyWr<-*
+++AG++W+W+
gi|2100851 156 CRAAGVSWHWK 166
Androgen_recep: domain 1 of 1, from 158 to 177: score -1.7, E = 9.2
CS XXXXXXXXXXXXXXXXXXXX
*->aAsssWHtLFtAEEGqLYGP<-*
aA sWH F E L+ P
gi|2100851 158 AAGVSWHWKFLTEQDPLWIP 177
YadA: domain 1 of 1, from 158 to 165: score 1.4, E = 8.3
*->gaGvGYqW<-*
+aGv+++W
gi|2100851 158 AAGVSWHW 165
DUF1994: domain 1 of 1, from 180 to 194: score 3.0, E = 1.9
*->VKarYgLwVtsaEkd<-*
VK+ + L+ t+ E+
gi|2100851 180 VKYGWFLPYTPSERE 194
DASH_Duo1: domain 1 of 1, from 222 to 236: score 3.4, E = 3.9
*->NEFGkGsseiDqeeiE<-*
N FG G se D++e E
gi|2100851 222 NSFGFGVSE-DAREKE 236
HCV_capsid: domain 1 of 1, from 266 to 277: score 1.9, E = 4
CS XXXXXXXXXXXX
*->RPsWGPtDPRrR<-*
RP W PtDP+ R
gi|2100851 266 RPPWAPTDPKPR 277
TPR_3: domain 1 of 1, from 278 to 294: score 4.2, E = 3.7
CS -HHHHHHH..HHHHHCC-TT-
*->kyqeAeelfsYallaildken<-*
+y+eA+++ +la++ +++
gi|2100851 278 EYEEAYKA----FLAEYNPND 294
DUF1292: domain 1 of 1, from 280 to 289: score 2.8, E = 3.7
*->eEvlnTfleE<-*
eE+++ fl+E
gi|2100851 280 EEAYKAFLAE 289
DUF1170: domain 1 of 1, from 311 to 331: score 1.3, E = 5
*->Sdkssspsfs..ieySLLvSl<-*
+++s s++ +++ ey L++S+
gi|2100851 311 PRHSRSKTAPskFEYGLQSSW 331
TRAUB: domain 2 of 2, from 375 to 389: score 6.3, E = 0.23
*->tWsDeqidELFasLF<-*
+W+++++ E +sLF
gi|2100851 375 DWEPPSTKEMHKSLF 389
PDEase_I: domain 1 of 1, from 497 to 516: score 0.0, E = 4.3
*->LadvvekDdiqplldtiedNr<-*
L+++v + di++ +++ +N
gi|2100851 497 LQSLVRP-DIREFFERLCNNT 516
DUF63: domain 1 of 1, from 504 to 511: score -0.6, E = 9.1
*->mIreFiyk<-*
+IreF+++
gi|2100851 504 DIREFFER 511
Phi-29_GP16_7: domain 1 of 1, from 538 to 548: score -0.3, E = 8.4
CS XXXXXXXXXXX
*->mEAiLmiGvla<-*
mE iL +G+l+
gi|2100851 538 MEVILQLGILT 548
Fes1: domain 1 of 1, from 585 to 591: score 2.9, E = 1.6
*->MdpnMNkLLkW<-*
Md kLL+W
gi|2100851 585 MD----KLLAW 591
PPTA: domain 1 of 1, from 600 to 617: score 3.5, E = 5.9
*->eELelteelleldpkNys<-*
e+L+ t++ll+++++N +
gi|2100851 600 EALRVTHKLLRTYFSNAH 617
DUF1669: domain 1 of 1, from 613 to 629: score -0.3, E = 8.9
*->dgkvHrsllllLtGqvV<-*
++ +Hr l ++LtGq+V
gi|2100851 613 FSNAHRDLCSQLTGQLV 629
PAS: domain 1 of 1, from 621 to 690: score 1.1, E = 9.7
CS HHHHTTSBGGGGSSTTCHHTT.HHHHHHHHHHHHT- SSTTCEEEEE
*->reeviGkslldlipeeddaeclvaelllqaleqgee.rgvevsfrvs
++++ G+ ++d++ d +++ + + +e +++v+++++
gi|2100851 621 CSQLTGQLVFDVLDLGD-----LKRFQDVIYTIREGlVAMQVDEITK 662
CS EE.T...TS-EEEEEEEEEEEEETTEE..EE
gqrflvrdgrpihvevraspvrdaggeilgf<-*
+++f gr+ + ++ + d+ ++++++
gi|2100851 663 PLEF---LGRYLLDRASTVALQDHPDKRTQV 690
Adeno_IVa2: domain 1 of 1, from 630 to 664: score -0.6, E = 8.4
*->LDrksvehveelwdkllllkqsldkiPlaeglkPl<-*
D +++++ + d++++ + l + + e+ kPl
gi|2100851 630 FDVLDLGDLKRFQDVIYTIREGLVAMQVDEITKPL 664
Dpy-30: domain 1 of 1, from 663 to 676: score 6.3, E = 0.97
*->PiefLAeYLlknkn<-*
P+efL+ YLl+ ++
gi|2100851 663 PLEFLGRYLLDRAS 676
RhoGEF: domain 1 of 1, from 690 to 873: score 73.3, E = 2.4e-21
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v+ Ell +E Y + L + ++v+ pLr+a +s k+++++ i+ iF
gi|2100851 690 VAHELLSSEVRYCKLLQAMRDVFVIPLRNALSSNKAIISAPNIQDIF 736
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
+N ++e+ +e+ + ris++ + q+lGd+F ++
gi|2100851 737 GNALQLLELSKELVE-DVKGRISEW-----------GPHQCLGDVFFKF- 773
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
l+ Y Y +n++ + +ek + +++p F+ f+ ++++ +++
gi|2100851 774 TIKLKAYSNYFNNYEQSLRCIEK--CIEQTPGFRTFARRYSKTPQMK--- 818
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+Lq Ll P Ri+ Y+ LL eL ++t + d++++ed a+++
gi|2100851 819 ---MLSLQEVLLAPTRRITEYITLLWELHHKTTP--DHPDREDITSAIAN 863
lqdlaksiNe<-*
+ l +++ e
gi|2100851 864 FRKLEEYVKE 873
WavE: domain 1 of 1, from 703 to 723: score 2.7, E = 0.76
*->lLlkalRravrlkLrKlrsle<-*
+Ll+a+R ++ +Lr+ +s++
gi|2100851 703 KLLQAMRDVFVIPLRNALSSN 723
6PGD: domain 1 of 1, from 704 to 712: score -1.1, E = 5.9
CS HHHHHHHHH
*->LiQAQRDYF<-*
L+QA+RD F
gi|2100851 704 LLQAMRDVF 712
DDT: domain 1 of 1, from 733 to 744: score 2.2, E = 7.9
*->seafgdlLmvye<-*
++fg++L+ +e
gi|2100851 733 QDIFGNALQLLE 744
TPR_1: domain 1 of 1, from 785 to 804: score 4.3, E = 4
CS THHHHHHHHHHHHHHHSTTH
*->gkydeAieayekALeldPnn<-*
++y++ + + ek++e P +
gi|2100851 785 NNYEQSLRCIEKCIEQTPGF 804
TPR_2: domain 1 of 1, from 785 to 804: score 5.4, E = 2.2
CS T-HHHHHHHHHHHHHH-TT-
*->gdyeeAleayekAleldPnn<-*
++ye+ l++ ek++e P++
gi|2100851 785 NNYEQSLRCIEKCIEQTPGF 804
Gly_acyl_tr_N: domain 1 of 1, from 788 to 803: score 8.0, E = 0.046
*->ERSlkfIeRCIqdFPs<-*
E Sl+ Ie CI++ P+
gi|2100851 788 EQSLRCIEKCIEQTPG 803
DUF2581: domain 1 of 1, from 853 to 874: score 1.8, E = 6
*->DKerAVeAmdrfReLearYmPed<-*
D+e++ +A+++fR Le +Y e+
gi|2100851 853 DREDITSAIANFRKLE-EYVKEL 874
Dynamitin: domain 1 of 1, from 854 to 875: score 5.7, E = 0.17
*->kenlasVeenlallearvkkLk<-*
+e++ s n+ +le+ vk+Lk
gi|2100851 854 REDITSAIANFRKLEEYVKELK 875
CASP_C: domain 1 of 1, from 864 to 886: score 3.6, E = 0.91
*->iaeLqkelselkekleeqeeLna<-*
+L++ ++elk k+e+ ++L+a
gi|2100851 864 FRKLEEYVKELKVKSERDRRLIA 886
IL3: domain 1 of 1, from 865 to 874: score 3.3, E = 1.8
*->kKLrFYLvhL<-*
+KL++Y++ L
gi|2100851 865 RKLEEYVKEL 874
DUF667: domain 1 of 1, from 918 to 933: score 2.0, E = 2.7
*->dElPpefrLflpikpk<-*
dE+ pe+r++ ++
gi|2100851 918 DEVQPELRIYHHVQNL 933
PH: domain 1 of 1, from 935 to 1019: score 22.8, E = 7.9e-06
CS EEEET TEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfd..dvLlyykdkk..........skpkgsipLsgiqvtkvedn
f+Lf++ v + + k+ + ++ +++++ si+L+ iqv +++d+
gi|2100851 935 FFLFNdaLVVTVFTTKHfpferciqenHNFFASISLNRIQVSDIPDS 981
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ +n+F+++t+ r +++ +ae++e + +Wi+a+q+ai
gi|2100851 982 kFVRNAFKMVTpKR-KWVCAAETYELKFSWITALQDAIQ 1019
Mcm10: domain 1 of 1, from 949 to 964: score -0.5, E = 5.1
*->TaFkaadrCveeeHdL<-*
T ++ +rC++e+H +
gi|2100851 949 TKHFPFERCIQENHNF 964
DUF1411: domain 1 of 1, from 969 to 977: score 0.5, E = 5.1
*->SLNrIedLD<-*
SLNrI+ D
gi|2100851 969 SLNRIQVSD 977
RWD: domain 1 of 1, from 1008 to 1018: score 1.4, E = 9
RF xxxxxxxxxxx
*->feliewlqenl<-*
f++i+ lq+ +
gi|2100851 1008 FSWITALQDAI 1018
//