hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 210126705.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|210126705|gb|EEA74391.1|
Accession: [none]
Description: hypothetical protein BRAFLDRAFT_68848 [Branchiostoma floridae]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rubella_E2 Rubella membrane glycoprotein E2 1.8 0.92 1
Connexin Connexin 3.0 0.97 1
LRR_2 Leucine Rich Repeat 2.8 5.2 1
zf-H2C2 His(2)-Cys(2) zinc finger 2.1 5.6 1
Phage-tail_1 Baseplate structural protein, domain -0.6 7.6 1
PRRSV_Env PRRSV putative envelope protein -0.2 8.5 1
PHD PHD-finger 0.6 9.4 1
POTRA_1 POTRA domain, FtsQ-type 1.7 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Rubella_E2 1/1 160 175 .. 1 17 [. 1.8 0.92
zf-H2C2 1/1 221 231 .. 29 39 .] 2.1 5.6
LRR_2 1/1 222 228 .. 20 26 .] 2.8 5.2
PHD 1/1 226 233 .. 46 53 .] 0.6 9.4
Connexin 1/1 271 288 .. 1 19 [. 3.0 0.97
Phage-tail_1 1/1 290 298 .. 189 197 .] -0.6 7.6
POTRA_1 1/1 298 309 .. 63 74 .] 1.7 9.5
PRRSV_Env 1/1 356 371 .. 219 234 .] -0.2 8.5
Alignments of top-scoring domains:
Rubella_E2: domain 1 of 1, from 160 to 175: score 1.8, E = 0.92
*->GLqPRADmAAPPapPqP<-*
+q RAD+AA a+P P
gi|2101267 160 -IQERADLAAHGALPPP 175
zf-H2C2: domain 1 of 1, from 221 to 231: score 2.1, E = 5.6
*->aeVIrsCqeCk<-*
++ I+ C+ Ck
gi|2101267 221 SKLISYCPGCK 231
LRR_2: domain 1 of 1, from 222 to 228: score 2.8, E = 5.2
*->kLLSgCP<-*
kL+S CP
gi|2101267 222 KLISYCP 228
PHD: domain 1 of 1, from 226 to 233: score 0.6, E = 9.4
CS --TTTCTC
*->yCpeCkpk<-*
yCp Ck+k
gi|2101267 226 YCPGCKAK 233
Connexin: domain 1 of 1, from 271 to 288: score 3.0, E = 0.97
CS -TTHHHHHHHHHHHHHTSS
*->dWsfLgkLLegVnkhSTai<-*
W++Lg L ++ ST+i
gi|2101267 271 -WKTLGSLMSKLEPNSTVI 288
Phage-tail_1: domain 1 of 1, from 290 to 298: score -0.6, E = 7.6
CS SSEEEEEEH
*->idGisImDy<-*
i+G ++m+y
gi|2101267 290 IMGCNVMGY 298
POTRA_1: domain 1 of 1, from 298 to 309: score 1.7, E = 9.5
*->wPntleIrvvEr<-*
+Pn + I++ E+
gi|2101267 298 YPNSVGIDLFEY 309
PRRSV_Env: domain 1 of 1, from 356 to 371: score -0.2, E = 8.5
*->LrsVFGFrwlkatrrs<-*
L +VFG r+ + t rs
gi|2101267 356 LEKVFGLRSSTSTSRS 371
//