hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 21222925.fa
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Query sequence: gi|21222925|ref|NP_628704.1|
Accession: [none]
Description: hypothetical protein SCO4541 [Streptomyces coelicolor A3(2)]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WXG100 Proteins of 100 residues with WXG 10.4 0.036 1
Amastin Amastin surface glycoprotein 4.7 0.58 1
Tropomyosin Tropomyosin 2.7 2.1 1
DUF2422 Protein of unknown function (DUF2422) 0.7 2.5 1
Trep_Strep Hypothetical bacterial integral membr 3.7 3.1 1
Ricin_B_lectin Ricin-type beta-trefoil lectin domain 0.8 4.7 1
Glycos_transf_3 Glycosyl transferase family, a/b doma 0.7 5.2 1
DUF445 Protein of unknown function (DUF445) 0.3 5.3 1
Transposase_33 Sulfolobus transposase 0.5 6.1 1
DUF2178 Predicted membrane protein (DUF2178) 1.4 6.8 1
DUF414 Protein of unknown function, DUF414 0.6 7 1
Carboxyl_trans Carboxyl transferase domain -0.4 7.4 1
Ion_trans_2 Ion channel 1.7 8 1
Herpes_US12 Herpesvirus US12 family 1.1 8.3 1
TMP TMP repeat 3.9 8.9 1
Cas_TM1812 CRISPR-associated protein (cas_TM1812 0.2 9 1
Vps16_C Vps16, C-terminal region -0.2 9.7 1
Sigma54_DBD Sigma-54, DNA binding domain 1.0 9.8 1
DUF2024 Domain of unknown function (DUF2024) 2.4 9.8 1
DUF1231 Protein of unknown function (DUF1231) -1.7 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WXG100 1/1 21 80 .. 7 66 .. 10.4 0.036
Transposase_33 1/1 31 46 .. 108 123 .. 0.5 6.1
Herpes_US12 1/1 56 66 .. 1 11 [. 1.1 8.3
Tropomyosin 1/1 75 108 .. 1 34 [. 2.7 2.1
Cas_TM1812 1/1 88 129 .. 72 118 .. 0.2 9
DUF2422 1/1 94 131 .. 546 594 .] 0.7 2.5
Glycos_transf_3 1/1 97 115 .. 244 264 .] 0.7 5.2
DUF414 1/1 147 175 .. 1 28 [. 0.6 7
Carboxyl_trans 1/1 164 181 .. 1 19 [. -0.4 7.4
Vps16_C 1/1 174 200 .. 126 153 .. -0.2 9.7
Sigma54_DBD 1/1 205 217 .. 138 150 .. 1.0 9.8
TMP 1/1 228 238 .. 1 11 [] 3.9 8.9
DUF2178 1/1 247 266 .. 1 20 [. 1.4 6.8
Trep_Strep 1/1 247 282 .. 61 102 .. 3.7 3.1
Amastin 1/1 248 258 .. 178 188 .] 4.7 0.58
Ion_trans_2 1/1 256 282 .. 55 81 .] 1.7 8
DUF445 1/1 258 275 .. 392 409 .] 0.3 5.3
DUF1231 1/1 408 427 .. 194 213 .. -1.7 9.8
Ricin_B_lectin 1/1 446 477 .. 105 138 .. 0.8 4.7
DUF2024 1/1 471 483 .. 60 72 .. 2.4 9.8
Alignments of top-scoring domains:
WXG100: domain 1 of 1, from 21 to 80: score 10.4, E = 0.036
*->tpeeLesaAkryknsaqtienilqrLnse.idelqgsnWeGaAfdaF
+p++++ +A++ + a++++++l++L++ +e +W+G++++ F
gi|2122292 21 DPDRIRKLAGTLHDFADDVSDVLRDLKGIaKEEEI-LSWAGKTAEVF 66
dsqfnqwkpamqqf<-*
++f+++ ++++++
gi|2122292 67 AEEFEDAPKKLRKL 80
Transposase_33: domain 1 of 1, from 31 to 46: score 0.5, E = 6.1
*->sLHdFVgklydvikdL<-*
+LHdF +dv +dL
gi|2122292 31 TLHDFADDVSDVLRDL 46
Herpes_US12: domain 1 of 1, from 56 to 66: score 1.1, E = 8.3
CS --S-TTTHHHH
*->MSWALktaDtF<-*
+SWA kta F
gi|2122292 56 LSWAGKTAEVF 66
Tropomyosin: domain 1 of 1, from 75 to 108: score 2.7, E = 2.1
CS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---X
*->KKlkqtedeldkakeeleeaqeeLeekekkaeeA<-*
KKl+ +++ a ++l+ + L+ +++ka +A
gi|2122292 75 KKLRKLKKSYGLAGDALATFWPDLQDAQEKADKA 108
Cas_TM1812: domain 1 of 1, from 88 to 129: score 0.2, E = 9
*->deAdeknweeleWqikkdvvekaDkealkypdlkelkkelqakllkv
+ A +++w++l+ d +ekaDk +++ e+ ++q+ l ++
gi|2122292 88 GDALATFWPDLQ-----DAQEKADKALRDGRKAREELTTAQTALTGA 129
<-*
gi|2122292 - -
DUF2422: domain 1 of 1, from 94 to 131: score 0.7, E = 2.5
*->pwsrkkhvqkrrdrqkelleklkevlehLkdalddFlaekrfellkp
+w+ + ++++ek++++l++ ++a++++ ++++l+++
gi|2122292 94 FWP----------DLQDAQEKADKALRDGRKAREEL-TTAQTALTGA 129
ya<-*
+
gi|2122292 130 ED 131
Glycos_transf_3: domain 1 of 1, from 97 to 115: score 0.7, E = 5.2
CS HHHHHHHTTCHHHHHHCHHHC
*->sLemkeGvqlAleaidsGaAl<-*
+L ++++++A +a+++G
gi|2122292 97 DL--QDAQEKADKALRDGRKA 115
DUF414: domain 1 of 1, from 147 to 175: score 0.6, E = 7
*->RKsgknapk.lapkvkkktRyeldqeARe<-*
+ +gk pk+ + v++ tR ++ ++AR+
gi|2122292 147 KNGGKDVPKpDEADVRRATRDAQHAKARQ 175
Carboxyl_trans: domain 1 of 1, from 164 to 181: score -0.4, E = 7.4
CS CCCHCHHHTTCEECHHHHH
*->kavkTpqhprGkltareRi<-*
+ + +qh++ ++ a eR+
gi|2122292 164 ATRD-AQHAKARQAAAERN 181
Vps16_C: domain 1 of 1, from 174 to 200: score -0.2, E = 9.7
*->qqaletEkevegrlsaLkqakdaysqvk<-*
+qa ++E++ve+ saL ak+++ q+k
gi|2122292 174 RQA-AAERNVESAQSALDAAKKLAGQAK 200
Sigma54_DBD: domain 1 of 1, from 205 to 217: score 1.0, E = 9.8
CS ---HHHHHHHHHH
*->diARRTVAKYREa<-*
+ ARRTV+K REa
gi|2122292 205 EAARRTVTKLREA 217
TMP: domain 1 of 1, from 228 to 238: score 3.9, E = 8.9
*->WngIkgffsga<-*
W+ I +++s+
gi|2122292 228 WEEIGDWVSDH 238
DUF2178: domain 1 of 1, from 247 to 266: score 1.4, E = 6.8
*->kqyrllliliviivGavvGf<-*
k + ++++iv+ivG+ +G+
gi|2122292 247 KWVVTIVGIIVMIVGGPLGW 266
Trep_Strep: domain 1 of 1, from 247 to 282: score 3.7, E = 3.1
*->fGaitImgiiigLlffltGhgywpmlilsIIgglIADliaWk<-*
++++tI gii+ + G + + +l++ ++ + AD i+ k
gi|2122292 247 KWVVTIVGIIVMIV----GGP-LGWLVFAAALVVMADTIR-K 282
Amastin: domain 1 of 1, from 248 to 258: score 4.7, E = 0.58
*->WiLdiinivfL<-*
W++ i++i+++
gi|2122292 248 WVVTIVGIIVM 258
Ion_trans_2: domain 1 of 1, from 256 to 282: score 1.7, E = 8
*->lftivyiliGiplfllllavlgrflte<-*
++ iv +++G +f+++l v+++ +++
gi|2122292 256 IVMIVGGPLGWLVFAAALVVMADTIRK 282
DUF445: domain 1 of 1, from 258 to 275: score 0.3, E = 5.3
*->tlvGGiIGlllylialli<-*
++vGG G l++++al++
gi|2122292 258 MIVGGPLGWLVFAAALVV 275
DUF1231: domain 1 of 1, from 408 to 427: score -1.7, E = 9.8
*->DinKRiPGYiHvniEGCiDG<-*
D+ R+PGY v i G DG
gi|2122292 408 DVAERLPGYQDVIIHGTTDG 427
Ricin_B_lectin: domain 1 of 1, from 446 to 477: score 0.8, E = 4.7
CS TT.TSEEEECSSSS .STTSEEEE.E-..-S-GGG
*->rkdsglCLDvagas..angtkvilwktCdwngsanQ<-*
++ ++ +LD+ ++ ++ ng ++++ tC ++++ Q
gi|2122292 446 VH-PNHVLDTINRIpgYNGEPIRML-TC--HSGTAQ 477
DUF2024: domain 1 of 1, from 471 to 483: score 2.4, E = 9.8
*->CHSEkApaeVeea<-*
CHS A +eV+++
gi|2122292 471 CHSGTAQPEVIQH 483
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