hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 212709085.fa
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Query sequence: gi|212709085|ref|ZP_03317213.1|
Accession: [none]
Description: hypothetical protein PROVALCAL_00118 [Providencia alcalifaciens DSM 30120]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BK_channel_a Calcium-activated BK potassium channe 5.5 0.34 1
Herpes_teg_N Herpesvirus tegument protein, N-termi 4.1 0.74 1
Phage_coat Phage PP7 coat protein 2.4 0.8 1
UPF0172 Uncharacterised protein family (UPF01 2.8 1.8 1
Bin3 Bicoid-interacting protein 3 (Bin3) 2.5 2.5 1
Acetyltransf_2 N-acetyltransferase 2.4 2.6 1
M-factor M-factor 2.7 4 1
HhH-GPD HhH-GPD superfamily base excision DNA 2.8 4.4 1
A-2_8-polyST Alpha-2,8-polysialyltransferase (POLY -0.6 4.4 1
ArfGap Putative GTPase activating protein fo 1.2 7.3 1
Pkr1 ER protein Pkr1 1.2 8.4 1
Abhydrolase_1 alpha/beta hydrolase fold 0.4 8.6 1
VWA von Willebrand factor type A domain -0.1 8.8 1
DUF1439 Protein of unknown function (DUF1439) 0.7 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0172 1/1 19 34 .. 92 108 .. 2.8 1.8
VWA 1/1 20 57 .. 156 196 .] -0.1 8.8
A-2_8-polyST 1/1 22 32 .. 1 12 [. -0.6 4.4
DUF1439 1/1 24 40 .. 167 183 .] 0.7 9.4
HhH-GPD 1/1 24 55 .. 88 121 .] 2.8 4.4
Abhydrolase_1 1/1 67 192 .. 70 187 .. 0.4 8.6
Phage_coat 1/1 70 80 .. 1 11 [. 2.4 0.8
M-factor 1/1 74 95 .. 1 21 [. 2.7 4
Herpes_teg_N 1/1 161 174 .. 178 191 .] 4.1 0.74
Acetyltransf_2 1/1 166 187 .. 247 268 .] 2.4 2.6
ArfGap 1/1 172 186 .. 123 137 .] 1.2 7.3
BK_channel_a 1/1 206 235 .. 1 31 [. 5.5 0.34
Bin3 1/1 207 216 .. 102 112 .] 2.5 2.5
Pkr1 1/1 220 230 .. 65 75 .] 1.2 8.4
Alignments of top-scoring domains:
UPF0172: domain 1 of 1, from 19 to 34: score 2.8, E = 1.8
*->NerfdDsspepvPAkKI<-*
N++++D+s+ ++ AkKI
gi|2127090 19 NQNVSDASLKKI-AKKI 34
VWA: domain 1 of 1, from 20 to 57: score -0.1, E = 8.8
CS SSCCHHHHHHHS-SSTCHHHEEEESSCCHHHHH..HHHHHH
*->gdvdeaeLrliasepcseghvfyvedfdalwlplqdlqeql<-*
++v+ a L++ia + + +h +++e f+ + l+++q+++
gi|2127090 20 QNVSDASLKKIAKKIRAVKHQNTPEVFE---NRLKRVQKLV 57
A-2_8-polyST: domain 1 of 1, from 22 to 32: score -0.6, E = 4.4
*->MifDasLkKirK<-*
+ DasLkKi K
gi|2127090 22 -VSDASLKKIAK 32
DUF1439: domain 1 of 1, from 24 to 40: score 0.7, E = 9.4
*->eALlKklakgleVkpGk<-*
+A lKk ak ++ ++++
gi|2127090 24 DASLKKIAKKIRAVKHQ 40
HhH-GPD: domain 1 of 1, from 24 to 55: score 2.8, E = 4.4
CS SHHHHHHHHHHCTCGCSTSTHHHHHHHHHHHHHC
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->Dlhvrrvlkrlggikerkptpekvekllrelwkp<-*
D +++ ++k+++++k + +tpe e +l +++++
gi|2127090 24 DASLKKIAKKIRAVKHQ-NTPEVFENRL-KRVQK 55
Abhydrolase_1: domain 1 of 1, from 67 to 192: score 0.4, E = 8.6
CS GTCEEEEEEESSSHHHCHCSTCHHHHHHHHHHHHHHHHHHHHHHHHH
*->elrvkalvlvgtvlpaglssplvprlgnleglladnffnrlydsvea
+ ++++++ ++ +++ss+ v+ ++n++ + ++ f ++ +d +
gi|2127090 67 D-KISKVIVDSIGEAVFSSSVNVQKYENKPISHLKLFNRTEMDLGKE 112
CS HSHHHHHHTCHHHHHCHHCCCCHHH..HHHHHHTEHHHHCHHHHHH
llgraikqfellgrplvsdflkqaeqwlsslirfgetdaldgllgp....
+++ f+ + ++ + + + s + +f+++++l l g++++
gi|2127090 113 KSSLTG--FHGYINNFRDTGEPALSLHGSEVEQFSFDVGLKLLQGKgdsi 160
CS HHHHHHHHHHHCT HTCTCSSEEEEE
......aaalgydlvwdls.alkkidvPtlii<-*
+++a+al+++l++ ++ +lk++dvP+ ++
gi|2127090 161 fyisssANALVKYLKKRFHlDLKNSDVPLHVL 192
Phage_coat: domain 1 of 1, from 70 to 80: score 2.4, E = 0.8
CS --EEEEEETTE
*->sKtivLsvGEA<-*
sK iv s+GEA
gi|2127090 70 SKVIVDSIGEA 80
M-factor: domain 1 of 1, from 74 to 95: score 2.7, E = 4
*->MDSiAtsvsSSSv.VNAyNknP<-*
DSi v SSSv+V y + P
gi|2127090 74 VDSIGEAVFSSSVnVQKYENKP 95
Herpes_teg_N: domain 1 of 1, from 161 to 174: score 4.1, E = 0.74
*->VystedpddvlaYl<-*
+y++++++++++Yl
gi|2127090 161 FYISSSANALVKYL 174
Acetyltransf_2: domain 1 of 1, from 166 to 187: score 2.4, E = 2.6
CS SHHHHHHHHHCTT---GCTCCH
*->taeEledvLkerFGIvLdaklv<-*
+a++l + Lk+rF ++L +++v
gi|2127090 166 SANALVKYLKKRFHLDLKNSDV 187
ArfGap: domain 1 of 1, from 172 to 186: score 1.2, E = 7.3
*->KYeeklfvlkeeqee<-*
KY +k+f l++++++
gi|2127090 172 KYLKKRFHLDLKNSD 186
BK_channel_a: domain 1 of 1, from 206 to 235: score 5.5, E = 0.34
*->slhskvlsealdqvicveELKlsLLAksclc<-*
++++ v+ + ++ + v+ELK++LL k+ ++
gi|2127090 206 AFNRPVYTYS-KDLVFVNELKHYLLNKNTTV 235
Bin3: domain 1 of 1, from 207 to 216: score 2.5, E = 2.5
*->FAkRpiyiFkK<-*
F Rp+y + K
gi|2127090 207 F-NRPVYTYSK 216
Pkr1: domain 1 of 1, from 220 to 230: score 1.2, E = 8.4
*->FiaELkqaklq<-*
F++ELk+ l+
gi|2127090 220 FVNELKHYLLN 230
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