hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            212709271.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: gi|212709271|ref|ZP_03317399.1|
Accession:      [none]
Description:    hypothetical protein PROVALCAL_00306 [Providencia alcalifaciens DSM 30120]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
TraS            Plasmid conjugative transfer entry ex    -0.3        6.6   1
Thaumatin       Thaumatin family                         -2.2        9.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
TraS              1/1      31    53 ..     1    24 [.    -0.3      6.6
Thaumatin         1/1      86    93 ..   199   206 .]    -2.2      9.9

Alignments of top-scoring domains:
TraS: domain 1 of 1, from 31 to 53: score -0.3, E = 6.6
                   *->mKnLAqivLvtvvqFiACYLAeWG<-*
                       K +A++     + Fi CY A+ G
  gi|2127092    31    -KSIAKVENTDKINFICCYSANGG    53

Thaumatin: domain 1 of 1, from 86 to 93: score -2.2, E = 9.9
                CS    -EEEEEST
                   *->NYrVvFCP<-*
                      NY V+F P
  gi|2127092    86    NYGVTFYP    93

//