hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 23012845.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|23012845|ref|ZP_00052837.1|
Accession: [none]
Description: COG5295: Autotransporter adhesin [Magnetospirillum magnetotacticum MS-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Flagellin_D3 Flagellin D3 domain 9.6 0.089 1
ATP-grasp ATP-grasp domain 4.2 0.46 1
Big_3 Bacterial Ig-like domain (group 3) 5.7 1.1 1
Phage_Capsid_P3 P3 major capsid protein 1.7 1.2 1
Mt_ATP-synt_D ATP synthase D chain, mitochondrial ( 2.8 1.9 1
Peptidase_M23 Peptidase family M23 1.8 2.9 1
Botulinum_HA-17 Clostridium botulinum HA-17 protein 1.5 3.4 1
Pneumo_ncap Pneumovirus nucleocapsid protein 0.4 4.1 1
OapA Opacity-associated protein A LysM-lik 1.9 4.8 1
Candida_ALS Candida agglutinin-like protein (ALS) -1.0 6.6 1
He_PIG Putative Ig domain 2.4 6.9 1
IgG_binding_B B domain 2.0 7.4 1
STAS STAS domain 1.8 7.7 1
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit 0.1 8.3 1
Capsule_synth Capsule polysaccharide biosynthesis p -0.2 9 1
NADase_NGA Nicotine adenine dinucleotide glycohy -1.4 9.2 1
DUF2500 Protein of unknown function (DUF2500) 0.9 9.4 1
Myco_arth_vir_N Mycoplasma virulence signal region (M 2.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Myco_arth_vir_N 1/1 1 11 [. 1 11 [. 2.3 9.9
STAS 1/1 82 98 .. 1 19 [. 1.8 7.7
RNA_pol_Rpc34 1/1 151 186 .. 1 48 [. 0.1 8.3
IgG_binding_B 1/1 202 221 .. 37 56 .] 2.0 7.4
ATP-grasp 1/1 206 213 .. 184 191 .] 4.2 0.46
Mt_ATP-synt_D 1/1 291 311 .. 1 21 [. 2.8 1.9
Peptidase_M23 1/1 340 360 .. 1 21 [. 1.8 2.9
Flagellin_D3 1/1 343 379 .. 1 43 [. 9.6 0.089
Botulinum_HA-17 1/1 364 379 .. 41 56 .. 1.5 3.4
NADase_NGA 1/1 382 394 .. 334 346 .. -1.4 9.2
OapA 1/1 384 393 .. 77 86 .] 1.9 4.8
DUF2500 1/1 481 489 .. 109 117 .] 0.9 9.4
Capsule_synth 1/1 482 488 .. 336 342 .] -0.2 9
Pneumo_ncap 1/1 536 549 .. 379 392 .] 0.4 4.1
Candida_ALS 1/1 550 558 .. 637 646 .] -1.0 6.6
Phage_Capsid_P3 1/1 567 582 .. 379 394 .] 1.7 1.2
He_PIG 1/1 578 608 .. 29 61 .] 2.4 6.9
Big_3 1/1 584 603 .. 52 70 .] 5.7 1.1
Alignments of top-scoring domains:
Myco_arth_vir_N: domain 1 of 1, from 1 to 11: score 2.3, E = 9.9
*->MyflKKKKnkI<-*
M+++K+K ++I
gi|2301284 1 MSHIKRKNSRI 11
STAS: domain 1 of 1, from 82 to 98: score 1.8, E = 7.7
CS EEEEEECTCE..EEEEEEE
*->yieaeeipgieVlilrldG<-*
++ea + +g+ i+ +dG
gi|2301284 82 ALEAAVKDGV--GIVEIDG 98
RNA_pol_Rpc34: domain 1 of 1, from 151 to 186: score 0.1, E = 8.3
*->MAeekeqLqPpdaAkvEiEnRllsqvmSkqipagltqqdLDAqkamg
MAe++ L + + l++ ++ gl +q L +k mg
gi|2301284 151 MAEIGAAL--KSSGEL-----LIEANS---VGQGLDGQLL--VKDMG 185
a<-*
+
gi|2301284 186 I 186
IgG_binding_B: domain 1 of 1, from 202 to 221: score 2.0, E = 7.4
*->ngVdGewlydtatktftvte<-*
+g dG w+ dt t + v+
gi|2301284 202 SGADGHWTLDTSTGAIQVQP 221
ATP-grasp: domain 1 of 1, from 206 to 213: score 4.2, E = 0.46
CS GGGHHHHS
*->GHwTLdga<-*
GHwTLd +
gi|2301284 206 GHWTLDTS 213
Mt_ATP-synt_D: domain 1 of 1, from 291 to 311: score 2.8, E = 1.9
*->AarrvAlssinWsaLaErvPp<-*
Aa r+ +s++n s+L+ v++
gi|2301284 291 AAVRIGTSTVNDSSLGDAVVQ 311
Peptidase_M23: domain 1 of 1, from 340 to 360: score 1.8, E = 2.9
CS SEE-SEEEE--TT-EEE-SSS
*->rfHkGiDiaaptGtPVyAaad<-*
+ +D+aa+tG+ V A+ d
gi|2301284 340 GRQFATDLAAATGADVAASTD 360
Flagellin_D3: domain 1 of 1, from 343 to 379: score 9.6, E = 0.089
CS EEEEE.-BG.GGSTTT-GGG..-SSEEEE-SSEEE-TTT--EE
*->atldlTaldldaaiktgvgGagttgtaaikDGkvyfddtdGKY<-*
+++dl+a++ +a+ ++++++ t++++ + +++ + ++KY
gi|2301284 343 FATDLAAAT-GADVAASTDT--TGNNGNWT---LEYVSSSNKY 379
Botulinum_HA-17: domain 1 of 1, from 364 to 379: score 1.5, E = 3.4
*->nNQKWkleYveeknaf<-*
nN W leYv+++n +
gi|2301284 364 NNGNWTLEYVSSSNKY 379
NADase_NGA: domain 1 of 1, from 382 to 394: score -1.4, E = 9.2
*->GKYsDGvYqYEYD<-*
G sDGvYqY D
gi|2301284 382 GTLSDGVYQYAHD 394
OapA: domain 1 of 1, from 384 to 393: score 1.9, E = 4.8
*->qSDGsFgRsK<-*
+SDG +++++
gi|2301284 384 LSDGVYQYAH 393
DUF2500: domain 1 of 1, from 481 to 489: score 0.9, E = 9.4
*->GtrFlgFer<-*
Gt++++F++
gi|2301284 481 GTKYVSFYL 489
Capsule_synth: domain 1 of 1, from 482 to 488: score -0.2, E = 9
*->lkyvprY<-*
+kyv++Y
gi|2301284 482 TKYVSFY 488
Pneumo_ncap: domain 1 of 1, from 536 to 549: score 0.4, E = 4.1
*->iknqLNikDedsed<-*
i+++L+i D ds++
gi|2301284 536 ITSYLGITDSDSSQ 549
Candida_ALS: domain 1 of 1, from 550 to 558: score -1.0, E = 6.6
*->Tstwseslft<-*
T+tws+s ++
gi|2301284 550 TETWSQS-VA 558
Phage_Capsid_P3: domain 1 of 1, from 567 to 582: score 1.7, E = 1.2
CS EESB-----------X
*->FtsRtELvnAGtistt<-*
Fts t AGtis t
gi|2301284 567 FTSATGTSGAGTISPT 582
He_PIG: domain 1 of 1, from 578 to 608: score 2.4, E = 6.9
*->tLdsstGritGtPtptvqpGsytftvtatdgsg<-*
t+ s+tG++t tP+ + + G+ tftv+++dg
gi|2301284 578 TI-SPTGAVTYTPNASFV-GTETFTVQVSDGTA 608
Big_3: domain 1 of 1, from 584 to 603: score 5.7, E = 1.1
*->tVTytYkGq.pvtatftVtV<-*
+VTyt+ + t+tftV+V
gi|2301284 584 AVTYTPNASfVGTETFTVQV 603
//