hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 29832294.fa
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Query sequence: gi|29832294|ref|NP_826928.1|
Accession: [none]
Description: hypothetical protein SAV_5751 [Streptomyces avermitilis MA-4680]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FeoB_N Ferrous iron transport protein B 10.1 0.014 1
HALZ Homeobox associated leucine zipper 8.8 0.09 1
Ins_allergen_rp Insect allergen related repeat 5.2 1.3 1
SK_channel Calcium-activated SK potassium channe 2.1 2.3 1
Penicil_amidase Penicillin amidase 0.2 2.4 1
ExsB ExsB 2.0 3 1
DUF727 Protein of unknown function (DUF727) 3.2 3.1 1
Rhamnogal_lyase Rhamnogalacturonate lyase family 2.6 3.3 1
AAR2 AAR2 protein 1.5 3.4 1
CBAH Linear amide C-N hydrolases, choloylg 0.8 3.6 1
Dyp_perox Dyp-type peroxidase family 0.7 3.6 1
Ribosomal_L15e Ribosomal L15 1.2 4.2 1
DnaB_C DnaB-like helicase C terminal domain 0.4 4.6 1
PhosphMutase 2,3-bisphosphoglycerate-independent p 0.9 4.7 1
MOSC MOSC domain 2.3 5.4 2
He_PIG Putative Ig domain 2.7 5.5 1
KapB Kinase associated protein B 2.3 5.9 1
Phage_T7_Capsid Phage T7 capsid assembly protein 1.4 8 1
Microvir_H Microvirus H protein (pilot protein) -0.6 9.7 1
Flagellin_N Bacterial flagellin N-terminus 1.2 9.7 1
DUF1954 Domain of unknown function (DUF1954) 0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
KapB 1/1 13 23 .. 106 116 .] 2.3 5.9
HALZ 1/1 16 25 .. 1 11 [. 8.8 0.09
Ribosomal_L15e 1/1 17 36 .. 173 193 .] 1.2 4.2
DUF1954 1/1 43 52 .. 1 10 [. 0.6 9.8
Phage_T7_Capsid 1/1 62 75 .. 110 123 .] 1.4 8
Ins_allergen_rp 1/1 87 112 .. 50 75 .] 5.2 1.3
AAR2 1/1 89 120 .. 387 440 .] 1.5 3.4
DUF727 1/1 91 100 .. 116 125 .] 3.2 3.1
Microvir_H 1/1 151 165 .. 1 15 [. -0.6 9.7
FeoB_N 1/1 198 219 .. 194 220 .] 10.1 0.014
PhosphMutase 1/1 218 228 .. 231 241 .] 0.9 4.7
Flagellin_N 1/1 242 253 .. 1 12 [. 1.2 9.7
SK_channel 1/1 250 263 .. 106 119 .] 2.1 2.3
Dyp_perox 1/1 257 269 .. 353 365 .] 0.7 3.6
He_PIG 1/1 261 273 .. 1 28 [. 2.7 5.5
Penicil_amidase 1/1 284 294 .. 1 11 [. 0.2 2.4
Rhamnogal_lyase 1/1 391 398 .. 269 276 .] 2.6 3.3
CBAH 1/1 438 460 .. 352 372 .] 0.8 3.6
ExsB 1/1 517 526 .. 179 188 .] 2.0 3
MOSC 1/2 532 548 .. 1 22 [. 1.3 9.9
MOSC 2/2 665 686 .. 1 35 [. 1.0 12
DnaB_C 1/1 772 782 .. 177 187 .. 0.4 4.6
Alignments of top-scoring domains:
KapB: domain 1 of 1, from 13 to 23: score 2.3, E = 5.9
*->nLeeLkkdYsl<-*
nLe+L+kdY
gi|2983229 13 NLEQLEKDYGS 23
HALZ: domain 1 of 1, from 16 to 25: score 8.8, E = 0.09
*->KQLErDYelLK<-*
QLE+DY+ LK
gi|2983229 16 -QLEKDYGSLK 25
Ribosomal_L15e: domain 1 of 1, from 17 to 36: score 1.2, E = 4.2
*->LRgKGkgasktRpssrRanwk<-*
L K +g+ kt +s+R ++k
gi|2983229 17 L-EKDYGSLKTVAGSIRTTGK 36
DUF1954: domain 1 of 1, from 43 to 52: score 0.6, E = 9.8
*->kdLkrYYsgp<-*
+ L++YY+ p
gi|2983229 43 QGLSAYYTAP 52
Phage_T7_Capsid: domain 1 of 1, from 62 to 75: score 1.4, E = 8
*->KPvArkkEGFadra<-*
KPvA + GFad
gi|2983229 62 KPVADRADGFADDL 75
Ins_allergen_rp: domain 1 of 1, from 87 to 112: score 5.2, E = 1.3
*->pEvqnflqkLeekGlDVdhfinliad<-*
+Ev+ ++qkLe lD+ +f+ + +
gi|2983229 87 TEVRPLVQKLEQLKLDATKFVSSVEG 112
AAR2: domain 1 of 1, from 89 to 120: score 1.5, E = 3.4
*->LrslLkdfrknlasaiFanvesptvvdgLerdLkskaeklkehltnk
+r+l++++ + +Lk a+k+ +++++
gi|2983229 89 VRPLVQKL-------------------E---QLKLDATKFVSSVEGD 113
fgWdfdn<-*
+W++d+
gi|2983229 114 DDWEYDE 120
DUF727: domain 1 of 1, from 91 to 100: score 3.2, E = 3.1
*->kLlqrLekLk<-*
+L+q+Le+Lk
gi|2983229 91 PLVQKLEQLK 100
Microvir_H: domain 1 of 1, from 151 to 165: score -0.6, E = 9.7
*->mgklfgGgQsaasqG<-*
+ klfgG Q +a G
gi|2983229 151 ITKLFGGTQMVAGDG 165
FeoB_N: domain 1 of 1, from 198 to 219: score 10.1, E = 0.014
*->algefvgaplwfgPlLqSLLvdGiigG<-*
++g++v++++w+g L+vdG++g
gi|2983229 198 EVGHWVKSFVWDG-----LIVDGVWGT 219
PhosphMutase: domain 1 of 1, from 218 to 228: score 0.9, E = 4.7
*->dLiKGIgryaG<-*
+ iKG+g ++G
gi|2983229 218 GTIKGLGTLVG 228
Flagellin_N: domain 1 of 1, from 242 to 253: score 1.2, E = 9.7
CS HHHHTS--TTTS
*->qeRLSSGlRINs<-*
+ +L +Gl+I+s
gi|2983229 242 LAQLATGLAISS 253
SK_channel: domain 1 of 1, from 250 to 263: score 2.1, E = 2.3
*->AiHPvPGeYkFtWt<-*
Ai +PG +Wt
gi|2983229 250 AISSIPGASALFWT 263
Dyp_perox: domain 1 of 1, from 257 to 269: score 0.7, E = 3.6
*->tGgyFFaPpgvkl<-*
++++F+++p +kl
gi|2983229 257 ASALFWTLPDDKL 269
He_PIG: domain 1 of 1, from 261 to 273: score 2.7, E = 5.5
*->tytlTkpsdgslasysttpggggLPsGL<-*
+tl ++ +LPs+L
gi|2983229 261 FWTL---------------PDDKLPSWL 273
Penicil_amidase: domain 1 of 1, from 284 to 294: score 0.2, E = 2.4
CS SSXEEEEETTS
*->adVeIrRDayG<-*
+++++ +D++G
gi|2983229 284 GKALVAWDEWG 294
Rhamnogal_lyase: domain 1 of 1, from 391 to 398: score 2.6, E = 3.3
*->FKLPDGeV<-*
+KLPDG+V
gi|2983229 391 LKLPDGSV 398
CBAH: domain 1 of 1, from 438 to 460: score 0.8, E = 3.6
CS .......... ...TSSSEEEE
*->PGAPVLSLDP..DNrDctelvty<-*
PGAP LDP++ +D +++v++
gi|2983229 438 PGAPAQYLDPkgNILDHQGNVVD 460
ExsB: domain 1 of 1, from 517 to 526: score 2.0, E = 3
*->eIvkLGdeLG<-*
++v+LGd LG
gi|2983229 517 QTVRLGDSLG 526
MOSC: domain 1 of 2, from 532 to 548: score 1.3, E = 9.9
CS TCCCCC.....S.......-GC
*->fglegdkgppsaqaptkvhggd<-*
g++gd ++ +vh+gd
gi|2983229 532 VGRTGD-----NAGTPTVHAGD 548
MOSC: domain 2 of 2, from 665 to 686: score 1.0, E = 12
CS TCCCCC.... .S.......-GCTSTTSTT-EE-GG
*->fglegdkgpp.saqaptkvhggdrEPmyRGTEiNer<-*
gleg+ ++++++p+++++g r
gi|2983229 665 PGLEGR---GtPTPTPQTHSLGL-----------KR 686
DnaB_C: domain 1 of 1, from 772 to 782: score 0.4, E = 4.6
*->LAKELniPViA<-*
LA++L+ PViA
gi|2983229 772 LARDLDAPVIA 782
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