hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 31873505.fa
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Query sequence: gi|31873505|emb|CAB56031.3|
Accession: [none]
Description: hypothetical protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 7.8 0.4 1
Ribosomal_L20 Ribosomal protein L20 4.6 0.46 1
NUP Purine nucleoside permease (NUP) 1.5 2 1
TP1 Nuclear transition protein 1 3.4 2 1
Orthopox_B11R Orthopoxvirus B11R protein 3.4 2.9 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.4 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L20 1/1 17 31 .. 1 15 [. 4.6 0.46
TP1 1/1 27 47 .. 38 54 .] 3.4 2
IQ 1/1 33 47 .. 1 15 [. 7.8 0.4
NUP 1/1 95 103 .. 1 9 [. 1.5 2
Orthopox_B11R 1/1 129 144 .. 1 16 [. 3.4 2.9
c-SKI_SMAD_bind 1/1 131 147 .. 82 98 .] 1.4 6.8
IFRD 1/1 132 143 .. 354 365 .] -0.2 6.5
TIR 1/1 183 198 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 252 265 .. 100 113 .] 0.7 6.4
IMPDH 1/1 273 281 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
Ribosomal_L20: domain 1 of 1, from 17 to 31: score 4.6, E = 0.46
*->tRVKrGyiaRkRRKK<-*
+RV rGy RkRRK+
gi|3187350 17 PRVFRGYAERKRRKR 31
TP1: domain 1 of 1, from 27 to 47: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|3187350 27 KRRKRENDSAsviqRNFRKHL 47
IQ: domain 1 of 1, from 33 to 47: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|3187350 33 NDSASVIQRNFRKHL 47
NUP: domain 1 of 1, from 95 to 103: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|3187350 95 VPPKVMLIS 103
Orthopox_B11R: domain 1 of 1, from 129 to 144: score 3.4, E = 2.9
*->DtdvanvEDimnEiDR<-*
D + a EDi+ Ei+R
gi|3187350 129 DHEHATFEDILEEIER 144
c-SKI_SMAD_bind: domain 1 of 1, from 131 to 147: score 1.4, E = 6.8
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|3187350 131 EHATFEDILEEIERKLN 147
IFRD: domain 1 of 1, from 132 to 143: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|3187350 132 HATFEDILEEIE 143
TIR: domain 1 of 1, from 183 to 198: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|3187350 183 EKEE----DMIHFWKRLSRL 198
Orthopox_N1: domain 1 of 1, from 252 to 265: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|3187350 252 QMIETYFDFRLYRL 265
IMPDH: domain 1 of 1, from 273 to 281: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|3187350 273 KLLDFDDVL 281
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