hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 32470752.fa
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Query sequence: gi|32470752|ref|NP_863745.1|
Accession: [none]
Description: lipoprotein receptor-related protein [Rhodopirellula baltica SH 1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ldl_recept_b Low-density lipoprotein receptor repe 112.9 4.1e-33 6
Cadherin Cadherin domain 53.1 1.6e-14 2
Chlam_PMP Chlamydia polymorphic membrane protei 35.9 1.7e-08 5
PKD PKD domain 20.6 8.4e-06 2
SGL SMP-30/Gluconolaconase/LRE-like regio 11.4 0.0058 1
AIRS AIR synthase related protein, N-termi 9.5 0.019 4
He_PIG Putative Ig domain 10.6 0.031 7
RhgB_N Rhamnogalacturonase B, N-terminal 6.6 0.14 1
BLIP Beta-lactamase inhibitor (BLIP) 6.1 0.16 1
DUF1964 Domain of unknown function (DUF1964) 8.2 0.19 1
RNA_polI_A34 DNA-directed RNA polymerase I subunit 6.4 0.21 2
SSB Single-strand binding protein family 6.4 0.26 1
NHL NHL repeat 8.9 0.32 2
DUF2057 Uncharacterized protein conserved in 4.7 0.4 1
Ig_Tie2_1 Tie-2 Ig-like domain 1 4.3 0.87 2
DUF1954 Domain of unknown function (DUF1954) 3.9 0.97 1
NurA NurA domain 3.0 0.98 1
CIA30 Complex I intermediate-associated pro 3.2 1.2 3
MpPF1 M penetrans paralogue family 1 0.7 2.3 1
DEAD DEAD/DEAH box helicase 2.6 2.3 1
RtxA RtxA repeat 4.9 2.9 2
DUF1514 Protein of unknown function (DUF1514) 4.5 3.2 1
FixQ Cbb3-type cytochrome oxidase componen 3.9 3.4 1
DUF1583 Protein of unknown function (DUF1583) 0.4 3.8 1
NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin- 3.3 3.8 1
DUF2258 Uncharacterized protein conserved in 2.7 3.9 1
Complex1_51K Respiratory-chain NADH dehydrogenase 1.6 4.2 1
HYR HYR domain 2.4 4.3 1
GWT1 GWT1 0.4 4.6 1
DUF1458 Protein of unknown function (DUF1458) 3.5 4.6 1
AstB Succinylarginine dihydrolase -0.0 4.9 1
QPP QPP 3.2 5.2 1
TFIIIC_subunit TFIIIC subunit 3.5 5.2 3
COX5A Cytochrome c oxidase subunit Va 1.2 5.3 1
ALF Short repeats of unknown function 3.3 5.4 2
DUF1451 Protein of unknown function (DUF1451) 1.9 5.5 1
Arylesterase Arylesterase 3.2 5.6 1
Pertactin Pertactin 2.3 5.9 1
MRP-S28 Mitochondrial ribosomal subunit prote 0.9 5.9 1
SBBP Beta-propeller repeat 3.1 5.9 1
PCI PCI domain 1.9 6.7 1
COQ7 Ubiquinone biosynthesis protein COQ7 2.0 6.9 1
DAO FAD dependent oxidoreductase 0.3 7.2 1
Calx-beta Calx-beta domain 2.1 7.3 1
MAPKK1_Int Mitogen-activated protein kinase kina 1.7 7.5 1
Glyco_hydro_2 Glycosyl hydrolases family 2, immunog -0.0 7.7 1
DsrH DsrH like protein 1.6 7.7 1
Ribosomal_S9 Ribosomal protein S9/S16 0.2 8.6 1
META META domain 2.2 8.8 1
PGAM Phosphoglycerate mutase family 0.0 8.9 1
CBM_20 Starch binding domain 1.5 8.9 1
DUF1889 Domain of unknown function (DUF1889) 0.1 9 1
CW_binding_2 Putative cell wall binding repeat 2 1.2 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
QPP 1/1 41 61 .. 16 36 .] 3.2 5.2
DEAD 1/1 64 78 .. 196 211 .] 2.6 2.3
NIR_SIR_ferr 1/1 125 145 .. 55 75 .] 3.3 3.8
DUF1451 1/1 296 318 .. 1 23 [. 1.9 5.5
NurA 1/1 355 382 .. 307 345 .] 3.0 0.98
PGAM 1/1 364 374 .. 183 193 .] 0.0 8.9
Calx-beta 1/1 369 383 .. 1 15 [. 2.1 7.3
META 1/1 383 394 .. 94 105 .] 2.2 8.8
Chlam_PMP 1/5 423 440 .. 1 19 [] 3.3 13
Chlam_PMP 2/5 447 470 .. 1 19 [] 4.3 6.9
DAO 1/1 447 458 .. 1 11 [. 0.3 7.2
SSB 1/1 475 487 .. 1 13 [. 6.4 0.26
Chlam_PMP 3/5 477 494 .. 1 19 [] 10.2 0.18
Chlam_PMP 4/5 504 522 .. 1 19 [] 10.5 0.14
Chlam_PMP 5/5 529 546 .. 1 19 [] 7.6 0.9
COQ7 1/1 614 624 .. 90 100 .] 2.0 6.9
AstB 1/1 645 660 .. 440 456 .] -0.0 4.9
Ldl_recept_b 1/6 660 700 .. 1 47 [] 26.9 3.2e-07
COX5A 1/1 688 699 .. 98 109 .] 1.2 5.3
NHL 1/2 689 717 .. 1 30 [] 1.0 47
PCI 1/1 696 708 .. 123 135 .] 1.9 6.7
Ldl_recept_b 2/6 702 742 .. 1 47 [] 7.5 0.23
CBM_20 1/1 708 727 .. 85 104 .] 1.5 8.9
GWT1 1/1 726 733 .. 188 197 .] 0.4 4.6
DUF2258 1/1 738 748 .. 70 80 .] 2.7 3.9
Ldl_recept_b 3/6 744 792 .. 1 47 [] 11.0 0.02
DUF1583 1/1 763 772 .. 1 10 [. 0.4 3.8
Complex1_51K 1/1 767 777 .. 164 174 .] 1.6 4.2
DUF2057 1/1 779 794 .. 1 16 [. 4.7 0.4
Ldl_recept_b 4/6 794 834 .. 1 47 [] 20.4 2.9e-05
SBBP 1/1 826 851 .. 16 39 .] 3.1 5.9
Ldl_recept_b 5/6 850 879 .. 16 47 .] 19.9 4.1e-05
SGL 1/1 852 899 .. 144 190 .. 11.4 0.0058
Arylesterase 1/1 866 888 .. 51 73 .. 3.2 5.6
NHL 2/2 868 889 .. 1 23 [. 7.9 0.59
Ldl_recept_b 6/6 881 917 .. 1 42 [. 27.2 2.5e-07
RhgB_N 1/1 883 910 .. 233 263 .] 6.6 0.14
Glyco_hydro_2 1/1 928 934 .. 136 142 .] -0.0 7.7
Cadherin 1/2 934 1025 .. 1 107 [] 15.5 0.001
AIRS 1/4 971 993 .. 1 21 [. 2.1 3.6
BLIP 1/1 987 1002 .. 178 193 .] 6.1 0.16
He_PIG 1/7 992 1013 .. 39 61 .] 3.3 3.8
PKD 1/2 996 1024 .. 60 92 .] 16.7 0.00013
HYR 1/1 1008 1024 .. 69 86 .] 2.4 4.3
DUF1458 1/1 1081 1087 .. 61 67 .] 3.5 4.6
DUF1889 1/1 1239 1251 .. 76 88 .. 0.1 9
MAPKK1_Int 1/1 1271 1283 .. 98 110 .. 1.7 7.5
DUF1954 1/1 1281 1292 .. 75 86 .] 3.9 0.97
CW_binding_2 1/1 1303 1309 .. 1 7 [. 1.2 9.3
Cadherin 2/2 1377 1443 .. 20 107 .] 37.6 4.4e-10
PKD 2/2 1414 1442 .. 60 92 .] 3.9 1.2
CIA30 1/3 1514 1536 .. 1 26 [. 1.1 5.4
ALF 1/2 1574 1591 .. 1 16 [. 1.7 16
TFIIIC_subunit 1/3 1603 1612 .. 26 35 .] 1.2 25
He_PIG 2/7 1621 1636 .. 45 61 .] 0.1 30
He_PIG 3/7 1643 1655 .. 49 61 .] 2.3 7.1
RtxA 1/2 1662 1676 .. 5 19 .] 2.4 16
AIRS 2/4 1699 1714 .. 1 16 [. 2.7 2.4
RNA_polI_A34 1/2 1706 1715 .. 1 10 [. 3.2 1.6
CIA30 2/3 1720 1742 .. 1 26 [. 1.1 5.4
Ig_Tie2_1 1/2 1750 1763 .. 1 14 [. 2.2 3.7
ALF 2/2 1780 1797 .. 1 16 [. 1.7 16
TFIIIC_subunit 2/3 1809 1818 .. 26 35 .] 1.2 25
He_PIG 4/7 1827 1842 .. 45 61 .] 0.1 30
He_PIG 5/7 1849 1861 .. 49 61 .] 2.3 7.1
RtxA 2/2 1868 1882 .. 5 19 .] 2.4 16
AIRS 3/4 1905 1920 .. 1 16 [. 2.7 2.4
RNA_polI_A34 2/2 1912 1921 .. 1 10 [. 3.2 1.6
CIA30 3/3 1926 1948 .. 1 26 [. 1.1 5.4
Ig_Tie2_1 2/2 1956 1969 .. 1 14 [. 2.2 3.7
TFIIIC_subunit 3/3 2015 2024 .. 26 35 .] 1.2 25
He_PIG 6/7 2033 2048 .. 45 61 .] 0.1 30
He_PIG 7/7 2055 2067 .. 49 61 .] 2.3 7.1
AIRS 4/4 2111 2119 .. 1 9 [. 1.9 4.2
MpPF1 1/1 2153 2170 .. 422 439 .] 0.7 2.3
Pertactin 1/1 2216 2232 .. 1 21 [. 2.3 5.9
MRP-S28 1/1 2228 2263 .. 1 39 [. 0.9 5.9
DUF1964 1/1 2238 2263 .. 15 35 .. 8.2 0.19
Ribosomal_S9 1/1 2248 2265 .. 1 17 [. 0.2 8.6
DUF1514 1/1 2348 2365 .. 49 66 .] 4.5 3.2
FixQ 1/1 2457 2467 .. 24 34 .. 3.9 3.4
DsrH 1/1 2503 2513 .. 88 98 .] 1.6 7.7
Alignments of top-scoring domains:
QPP: domain 1 of 1, from 41 to 61: score 3.2, E = 5.2
*->QQPvraqspdtrparlpatpp<-*
QQ+vra +p+ rlp++ +
gi|3247075 41 QQSVRARRPVALGKRLPKIGT 61
DEAD: domain 1 of 1, from 64 to 78: score 2.6, E = 2.3
CS EEEEEESS-HHHHHHH
RF xxxxxxxxxxxxxxxx
*->qtllfSATlprnvedl<-*
+++lfSAT++ ++++
gi|3247075 64 PMVLFSATPI-DPAMM 78
NIR_SIR_ferr: domain 1 of 1, from 125 to 145: score 3.3, E = 3.8
CS EEEEEECGGHHHHHHHHHHTT
*->iqlhgikkedlpailaeLaea<-*
i++ + dl+a+l++L+ +
gi|3247075 125 IIIIDALTPDLEALLEDLRLH 145
DUF1451: domain 1 of 1, from 296 to 318: score 1.9, E = 5.5
*->llerlterlklsekeLkkaveqa<-*
+ ++l e + ++e +L +a++qa
gi|3247075 296 VTTWLDESNNNGETSLREAITQA 318
NurA: domain 1 of 1, from 355 to 382: score 3.0, E = 0.98
CS HHHHGGGG-......---------SS-HHHHHHHHHHHC
*->deellslltyalllsqplsgsGYPypliPLalAdelAki<-*
d ++l lt + g G + + Ad l++i
gi|3247075 355 DFDILKDLT--------IVGHGMNIT---IIDADDLSRI 382
PGAM: domain 1 of 1, from 364 to 374: score 0.0, E = 8.9
CS EE-HHHHHHHH
*->iVsHGgviral<-*
iV+HG+ i+ +
gi|3247075 364 IVGHGMNITII 374
Calx-beta: domain 1 of 1, from 369 to 383: score 2.1, E = 7.3
*->atvtIlDdddagvvg<-*
+++tI+D dd ++++
gi|3247075 369 MNITIIDADDLSRIF 383
META: domain 1 of 1, from 383 to 394: score 2.2, E = 8.8
*->ysveggtLtLtn<-*
+ v+ggtLtL++
gi|3247075 383 FDVHGGTLTLSD 394
Chlam_PMP: domain 1 of 5, from 423 to 440: score 3.3, E = 13
*->ditFsgNsaaggGGAiyas<-*
+++N+a GGAi ++
gi|3247075 423 RALLTSNTA-TEGGAIGNK 440
Chlam_PMP: domain 2 of 5, from 447 to 470: score 4.3, E = 6.9
*->ditFsgNsa.....aggGGAiyas<-*
d+ + gN++ ++ ++ GG+i ++
gi|3247075 447 DVAIIGNGGvngyaTNTGGGITNR 470
DAO: domain 1 of 1, from 447 to 458: score 0.3, E = 7.2
CS EEEEE- -SHHH
*->DVvVIG.GGivG<-*
DV++IG+GG+ G
gi|3247075 447 DVAIIGnGGVNG 458
SSB: domain 1 of 1, from 475 to 487: score 6.4, E = 0.26
CS EEEEEEEEEESSS
*->mNrvtLiGrvakd<-*
+NrvtL+G+va++
gi|3247075 475 LNRVTLSGNVATA 487
Chlam_PMP: domain 3 of 5, from 477 to 494: score 10.2, E = 0.18
*->ditFsgNsaaggGGAiyas<-*
+t+sgN a GGAi+ +
gi|3247075 477 RVTLSGNVA-TAGGAIFVE 494
Chlam_PMP: domain 4 of 5, from 504 to 522: score 10.5, E = 0.14
*->ditFsgNsaaggGGAiyas<-*
++t sgN++a+ GG++y++
gi|3247075 504 NVTVSGNTGANAGGGLYTK 522
Chlam_PMP: domain 5 of 5, from 529 to 546: score 7.6, E = 0.9
*->ditFsgNsaaggGGAiyas<-*
+tF+ N++ + GG+i+ +
gi|3247075 529 HSTFTLNTS-NIGGGIFVE 546
COQ7: domain 1 of 1, from 614 to 624: score 2.0, E = 6.9
*->gfalgaGcala<-*
+ al+aG+a++
gi|3247075 614 THALQAGSAAI 624
AstB: domain 1 of 1, from 645 to 660: score -0.0, E = 4.9
CS T--.S-SGGG-------
*->kLGDsvYpFQREGGGta<-*
+L+ +v FQR GG
gi|3247075 645 GLP-DVGAFQRQGGVIN 660
Ldl_recept_b: domain 1 of 6, from 660 to 700: score 26.9, E = 3.2e-07
CS TEEEEEETTTTEEEEEECCCTTSSSEEEEEEST..TS-EEEEEEETT
*->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi
+rl+W+D+ l+ ++++a l+G+++ tl+s+ ++P+ + vD +
gi|3247075 660 NRLFWIDHDLG---TVQSAALDGTNVQTLVSGL---SNPEELYVDSV 700
CS
<-*
gi|3247075 - -
COX5A: domain 1 of 1, from 688 to 699: score 1.2, E = 5.3
*->GiptkEELgldk<-*
G + +EEL d+
gi|3247075 688 GLSNPEELYVDS 699
NHL: domain 1 of 2, from 689 to 717: score 1.0, E = 47
CS BSSEEEEEE-TTTS-EEEEE-GGGTEEEEE
*->lnrPhGvavdpsdGrvyVaDgsgNhrvqvf<-*
l++P + vd + ++y ++ g +r++
gi|3247075 689 LSNPEELYVDSVNQHLYFSE-AGENRIRRV 717
PCI: domain 1 of 1, from 696 to 708: score 1.9, E = 6.7
CS EEETTTTEEEE--
*->kIDqvngivvvsk<-*
++D+vn+ +++s+
gi|3247075 696 YVDSVNQHLYFSE 708
Ldl_recept_b: domain 2 of 6, from 702 to 742: score 7.5, E = 0.23
CS TEEEEEETTTTEEEEEECCCTTSSSEEEEEEST..TS-EEEEEEETT
*->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi
++lY++++++ +i + +++G+ ++++ +P+g vD +
gi|3247075 702 QHLYFSEAGEN---RIRRVNFDGTGLVNVLTGL---VAPQGMEVDLV 742
CS
<-*
gi|3247075 - -
CBM_20: domain 1 of 1, from 708 to 727: score 1.5, E = 8.9
CS -SSSEEEEE--SSSEEEEEE
*->EsGpNRsytvPasgtgtvtv<-*
E G+NR+ v +gtg v+v
gi|3247075 708 EAGENRIRRVNFDGTGLVNV 727
GWT1: domain 1 of 1, from 726 to 733: score 0.4, E = 4.6
*->NLiVLTGlVN<-*
N VLTGlV
gi|3247075 726 N--VLTGLVA 733
DUF2258: domain 1 of 1, from 738 to 748: score 2.7, E = 3.9
*->EfsIeDGkIvW<-*
E ++ +GkI W
gi|3247075 738 EVDLVGGKIYW 748
Ldl_recept_b: domain 3 of 6, from 744 to 792: score 11.0, E = 0.02
CS TEEEEEETTTTEEEEEECCCTTSSSEEEEEEST. .TS-EEEEEEE
*->grlYWtDsslrkIasisvadlnGsdrrtlfsede..dlqhPngIavD
g++YW++ + ++ + +adl+Gs++ tl + l P++I +D
gi|3247075 744 GKIYWVEDGAGSHNEVKRADLDGSNVETLATITAflNLTIPDDIELD 790
CS TT
pi<-*
+
gi|3247075 791 LV 792
DUF1583: domain 1 of 1, from 763 to 772: score 0.4, E = 3.8
*->elkGSnlEsL<-*
+l+GSn+E L
gi|3247075 763 DLDGSNVETL 772
Complex1_51K: domain 1 of 1, from 767 to 777: score 1.6, E = 4.2
*->nNVeTlaavpr<-*
+NVeTla +
gi|3247075 767 SNVETLATITA 777
DUF2057: domain 1 of 1, from 779 to 794: score 4.7, E = 0.4
*->atLtlpdnielLaVnG<-*
+Lt+pd+iel +VnG
gi|3247075 779 LNLTIPDDIELDLVNG 794
Ldl_recept_b: domain 4 of 6, from 794 to 834: score 20.4, E = 2.9e-05
CS TEEEEEETTTTEEEEEECCCTTSSSEEEEEEST..TS-EEEEEEETT
*->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngIavDpi
g++YW+D + i + dl+Gs+r t++s+d +gIa+D +
gi|3247075 794 GHVYWSDELTL---EINRMDLDGSNRVTVISSD---KGVRGIAIDSV 834
CS
<-*
gi|3247075 - -
SBBP: domain 1 of 1, from 826 to 851: score 3.1, E = 5.9
*->gngIavDsnGN.iY..vtGstngnnfe<-*
++gIa+Ds+ N++Y v+ ++ng ++
gi|3247075 826 VRGIAIDSVNNkLYyaVGAYSNG-EIR 851
Ldl_recept_b: domain 5 of 6, from 850 to 879: score 19.9, E = 4.1e-05
CS EECCCTTSSSEEEEEEST..TS-EEEEEEETT
*->isvadlnGsdrrtlfsededlqhPngIavDpi<-*
i +adl+Gs+r tl+++ l+ PngI vDp
gi|3247075 850 IRRADLDGSNRETLIDSG--LDGPNGIEVDPA 879
SGL: domain 1 of 1, from 852 to 899: score 11.4, E = 0.0058
*->Rldpdggk..vervldgvtisNGlawSpDgktlYfaDSptrkIwafd
R d+d g+++ +++++g+ +NG+ +p + Y+aDS +I d
gi|3247075 852 RADLD-GSnrETLIDSGLDGPNGIEVDPASGKIYWADSGLPQISMAD 897
yD<-*
+D
gi|3247075 898 LD 899
Arylesterase: domain 1 of 1, from 866 to 888: score 3.2, E = 5.6
CS EESSEEEEEE-TTSSEEEEEETT
*->sgfssanGInispdkKyiYVasi<-*
sg++ +nGI ++p iY a++
gi|3247075 866 SGLDGPNGIEVDPASGKIYWADS 888
NHL: domain 2 of 2, from 868 to 889: score 7.9, E = 0.59
CS BSSEEEEEE-TTTS-EEEEE-GG
*->lnrPhGvavdpsdGrvyVaDgsg<-*
l+ P G+ vdp +G +y aD sg
gi|3247075 868 LDGPNGIEVDPASGKIYWAD-SG 889
Ldl_recept_b: domain 6 of 6, from 881 to 917: score 27.2, E = 2.5e-07
CS TEEEEEETTTTEEEEEECCCTTSSSEEEEEEST..TS-EEEE
*->grlYWtDsslrkIasisvadlnGsdrrtlfsededlqhPngI<-*
g++YW Ds+l+ is+adl+Gs++ l lq P g+
gi|3247075 881 GKIYWADSGLP---QISMADLDGSNVTNLGIAG--LQQPHGL 917
RhgB_N: domain 1 of 1, from 883 to 910: score 6.6, E = 0.14
*->mlFsdsGtPsssLyPGnlDtSffdasLGisG<-*
++ dsG P s +lD S + +LGi G
gi|3247075 883 IYWADSGLPQIS--MADLDGSNVT-NLGIAG 910
Glyco_hydro_2: domain 1 of 1, from 928 to 934: score -0.0, E = 7.7
CS EEEEB--
*->plkVGFR<-*
p ++GFR
gi|3247075 928 PMHIGFR 934
Cadherin: domain 1 of 2, from 934 to 1025: score 15.5, E = 0.001
CS --EEE-SS.. .S---EEEEE---S..-TTTT----------SS--
*->ysasvpEnap..vGtevltvtAtDaDdPlgpNgrirYsilggnpggw
++ v En+ ++ G +v+t+ D D + +Y +gg + +
gi|3247075 934 RPSDVVENTDtsAGVSVGTLSTLDID----EDETFTYTVTGGADAAK 976
CS --B-TTSSEEE..E---S- --S.....S-B--EEE----.........S
FrIdpdtGdnegiisttkp.LDREeifngeYeLtveAtDadpllasgggp
F+I + d+ + +t LD+E + + Y+++v + D++
gi|3247075 977 FTIGGGNSDE---LILTDGvLDYENQ--SSYTVVVNVEDSA--------- 1012
CS ---EEEE--EEE-
plsstatvtitVl<-*
+ +t t+ti V
gi|3247075 1013 GNNTTQTITIRVA 1025
AIRS: domain 1 of 4, from 971 to 993: score 2.1, E = 3.6
CS ---B------ --EEEEEEEEE
*->GDDAAvirlp..gpvlvvttDgv<-*
G DAA + +++++ + ++ tDgv
gi|3247075 971 GADAAKFTIGggNSDELILTDGV 993
BLIP: domain 1 of 1, from 987 to 1002: score 6.1, E = 0.16
CS EEEETTEEEEEEEES-
*->ftfTDGvLtsrrQrdL<-*
+ +TDGvL + Q++
gi|3247075 987 LILTDGVLDYENQSSY 1002
He_PIG: domain 1 of 7, from 992 to 1013: score 3.3, E = 3.8
*->GtPtptvqpGsytftvtatdgsg<-*
G+ ++ q syt+ v ++d++g
gi|3247075 992 GVLDYENQS-SYTVVVNVEDSAG 1013
PKD: domain 1 of 2, from 996 to 1024: score 16.7, E = 0.00013
CS ESS....SEEEEEEEEEEETTCEEEEEEEEEEE
*->YskgsVtpGtYtVtLtvsngvgsasattttvtV<-*
Y++ +YtV ++v++++g+++++t+t+ V
gi|3247075 996 YEN----QSSYTVVVNVEDSAGNNTTQTITIRV 1024
HYR: domain 1 of 1, from 1008 to 1024: score 2.4, E = 4.3
*->atDnaGNeAdsCtFtVtV<-*
++D+aGN+ + t t++V
gi|3247075 1008 VEDSAGNNT-TQTITIRV 1024
DUF1458: domain 1 of 1, from 1081 to 1087: score 3.5, E = 4.6
*->VGFrLee<-*
VGFrLe+
gi|3247075 1081 VGFRLEN 1087
DUF1889: domain 1 of 1, from 1239 to 1251: score 0.1, E = 9
*->EGWnPGFtEKmvG<-*
+G n GFtEK+vG
gi|3247075 1239 DGGNLGFTEKIVG 1251
MAPKK1_Int: domain 1 of 1, from 1271 to 1283: score 1.7, E = 7.5
*->LiltvigssncNt<-*
L+++v+++s++Nt
gi|3247075 1271 LLISVHAGSEANT 1283
DUF1954: domain 1 of 1, from 1281 to 1292: score 3.9, E = 0.97
*->rnySIGGITKtN<-*
+n++IGG+T tN
gi|3247075 1281 ANTTIGGVTGTN 1292
CW_binding_2: domain 1 of 1, from 1303 to 1309: score 1.2, E = 9.3
*->tRIgGsd<-*
tRIgGs+
gi|3247075 1303 TRIGGSN 1309
Cadherin: domain 2 of 2, from 1377 to 1443: score 37.6, E = 4.4e-10
CS E---S..-TTTT----------SS----B-TTSSEEE..E---S---
*->AtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdnegiisttkpLD
AtD+D + ++Ys+++++ + +F+Id++tG +++++ LD
gi|3247075 1377 ATDSD-----GEAVTYSLISDP-DSKFAIDSNTGI----VTLAATLD 1413
CS S.....S-B--EEE----.........S---EEEE--EEE-
REeifngeYeLtveAtDadpllasgggpplsstatvtitVl<-*
+ + e+++tv+At ad + +++ t t++V+
gi|3247075 1414 YDTA--TEHSFTVRATSAD---------SSFTEETFTVQVI 1443
PKD: domain 2 of 2, from 1414 to 1442: score 3.9, E = 1.2
CS ESS....SEEEEEEEEEEETTCEEEEEEEEEEE
*->YskgsVtpGtYtVtLtvsngvgsasattttvtV<-*
Y + +++++ t++++++ +s + t tv V
gi|3247075 1414 YDT----ATEHSFTVRATSADSSFTEETFTVQV 1442
CIA30: domain 1 of 3, from 1514 to 1536: score 1.1, E = 5.4
*->fdFtqrqpeslddWravdDtvmGEGs<-*
+dF ++++ ld +vdD +G G+
gi|3247075 1514 LDF--DTNSVLDVTVSVDDNTVG-GT 1536
ALF: domain 1 of 2, from 1574 to 1591: score 1.7, E = 16
*->Rvavvrllatp.g.GpaV<-*
R++++++++t++g+G++V
gi|3247075 1574 RIKMADINVTDdGtGTNV 1591
TFIIIC_subunit: domain 1 of 3, from 1603 to 1612: score 1.2, E = 25
*->etiGTelaFe<-*
e++GTel+
gi|3247075 1603 EIVGTELFWK 1612
He_PIG: domain 2 of 7, from 1621 to 1636: score 0.1, E = 30
*->vqpGsytftvtatdgsg<-*
+qp s ++tv + d+
gi|3247075 1621 TQP-SLDVTVNVDDSTL 1636
He_PIG: domain 3 of 7, from 1643 to 1655: score 2.3, E = 7.1
*->sytftvtatdgsg<-*
s++ft+t+td
gi|3247075 1643 STDFTLTVTDVNE 1655
RtxA: domain 1 of 2, from 1662 to 1676: score 2.4, E = 16
*->aNvitkvGdggdlaf<-*
aN++t +++g+dl+
gi|3247075 1662 ANIVTTISEGQDLSS 1676
AIRS: domain 2 of 4, from 1699 to 1714: score 2.7, E = 2.4
CS ---B--------EEEE
*->GDDAAvirlpgpvlvv<-*
GDD+A++r++g ++++
gi|3247075 1699 GDDSALFRIDGTEVWL 1714
RNA_polI_A34: domain 1 of 2, from 1706 to 1715: score 3.2, E = 1.6
*->klegKelWLI<-*
+ +g+e+WLI
gi|3247075 1706 RIDGTEVWLI 1715
CIA30: domain 2 of 3, from 1720 to 1742: score 1.1, E = 5.4
*->fdFtqrqpeslddWravdDtvmGEGs<-*
+dF ++++ ld +vdD +G G+
gi|3247075 1720 LDF--DTNSVLDVTVSVDDNTVG-GT 1742
Ig_Tie2_1: domain 1 of 2, from 1750 to 1763: score 2.2, E = 3.7
*->isDliLvNslPlVS<-*
+ ++ vNs P+VS
gi|3247075 1750 SMTVTDVNSAPVVS 1763
ALF: domain 2 of 2, from 1780 to 1797: score 1.7, E = 16
*->Rvavvrllatp.g.GpaV<-*
R++++++++t++g+G++V
gi|3247075 1780 RIKMADINVTDdGtGTNV 1797
TFIIIC_subunit: domain 2 of 3, from 1809 to 1818: score 1.2, E = 25
*->etiGTelaFe<-*
e++GTel+
gi|3247075 1809 EIVGTELFWK 1818
He_PIG: domain 4 of 7, from 1827 to 1842: score 0.1, E = 30
*->vqpGsytftvtatdgsg<-*
+qp s ++tv + d+
gi|3247075 1827 TQP-SLDVTVNVDDSTL 1842
He_PIG: domain 5 of 7, from 1849 to 1861: score 2.3, E = 7.1
*->sytftvtatdgsg<-*
s++ft+t+td
gi|3247075 1849 STDFTLTVTDVNE 1861
RtxA: domain 2 of 2, from 1868 to 1882: score 2.4, E = 16
*->aNvitkvGdggdlaf<-*
aN++t +++g+dl+
gi|3247075 1868 ANIVTTISEGQDLSS 1882
AIRS: domain 3 of 4, from 1905 to 1920: score 2.7, E = 2.4
CS ---B--------EEEE
*->GDDAAvirlpgpvlvv<-*
GDD+A++r++g ++++
gi|3247075 1905 GDDSALFRIDGTEVWL 1920
RNA_polI_A34: domain 2 of 2, from 1912 to 1921: score 3.2, E = 1.6
*->klegKelWLI<-*
+ +g+e+WLI
gi|3247075 1912 RIDGTEVWLI 1921
CIA30: domain 3 of 3, from 1926 to 1948: score 1.1, E = 5.4
*->fdFtqrqpeslddWravdDtvmGEGs<-*
+dF ++++ ld +vdD +G G+
gi|3247075 1926 LDF--DTNSVLDVTVSVDDNTVG-GT 1948
Ig_Tie2_1: domain 2 of 2, from 1956 to 1969: score 2.2, E = 3.7
*->isDliLvNslPlVS<-*
+ ++ vNs P+VS
gi|3247075 1956 SMTVTDVNSAPVVS 1969
TFIIIC_subunit: domain 3 of 3, from 2015 to 2024: score 1.2, E = 25
*->etiGTelaFe<-*
e++GTel+
gi|3247075 2015 EIVGTELFWK 2024
He_PIG: domain 6 of 7, from 2033 to 2048: score 0.1, E = 30
*->vqpGsytftvtatdgsg<-*
+qp s ++tv + d+
gi|3247075 2033 TQP-SLDVTVNVDDSTL 2048
He_PIG: domain 7 of 7, from 2055 to 2067: score 2.3, E = 7.1
*->sytftvtatdgsg<-*
s++ft+t+td
gi|3247075 2055 STDFTLTVTDVNE 2067
AIRS: domain 4 of 4, from 2111 to 2119: score 1.9, E = 4.2
CS ---B-----
*->GDDAAvirl<-*
GDDAA++++
gi|3247075 2111 GDDAALFEV 2119
MpPF1: domain 1 of 1, from 2153 to 2170: score 0.7, E = 2.3
*->DGtttaKdiSFdVkltvt<-*
+G++++K+ + +V+ t t
gi|3247075 2153 GGSEDTKSLQIQVTTTNT 2170
Pertactin: domain 1 of 1, from 2216 to 2232: score 2.3, E = 5.9
*->VaaLaLsgDGtVdFrastasp<-*
V++L +++DG+ F ++p
gi|3247075 2216 VGNLNMQADGSFVF----TPP 2232
MRP-S28: domain 1 of 1, from 2228 to 2263: score 0.9, E = 5.9
*->pFkpPpe.tqPirfryttYvgeepSiRhPasRKVVlevkv<-*
F+pPp i f+ t + g++ h+a+ V+l++ +
gi|3247075 2228 VFTPPPGfIGSISFEWTAFDGRQ----HSAAATVTLTFLP 2263
DUF1964: domain 1 of 1, from 2238 to 2263: score 8.2, E = 0.19
*->SIaFsWrgadG.....tStatLTFeP<-*
SI+F W+++dG++++ t tLTF P
gi|3247075 2238 SISFEWTAFDGrqhsaAATVTLTFLP 2263
Ribosomal_S9: domain 1 of 1, from 2248 to 2265: score 0.2, E = 8.6
CS BSSS-B--EEEE ...CS
*->GRRKSAvArvfv.FLPkp<-*
GR SA+A v+++FLP+p
gi|3247075 2248 GRQHSAAATVTLtFLPVP 2265
DUF1514: domain 1 of 1, from 2348 to 2365: score 4.5, E = 3.2
*->GLeeyrieveRikkevkk<-*
G ee e+eR+++ v +
gi|3247075 2348 GAEEASTELERMNASVNE 2365
FixQ: domain 1 of 1, from 2457 to 2467: score 3.9, E = 3.4
*->lGvVvyAfrPg<-*
+GvV++A+r+g
gi|3247075 2457 VGVVAWALRSG 2467
DsrH: domain 1 of 1, from 2503 to 2513: score 1.6, E = 7.7
CS HHHTTTTSS--
*->dLtvkhdkvit<-*
+L+ +hdk +t
gi|3247075 2503 ELMDRHDKAMT 2513
//