hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 32471951.fa
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Query sequence: gi|32471951|ref|NP_864945.1|
Accession: [none]
Description: putative glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lectin_legB Legume lectin domain 246.3 7.5e-71 1
Calx-beta Calx-beta domain 85.5 1.6e-22 1
Homoserine_dh Homoserine dehydrogenase 5.9 0.31 1
Lum_binding Lumazine binding domain 5.8 0.36 1
TNV_CP Satellite tobacco necrosis virus coat 4.0 0.51 1
DUF416 Protein of unknown function, DUF 4.1 0.93 1
DUF137 Protein of unknown function DUF137 4.3 1.1 1
YadA YadA-like C-terminal region 3.7 1.5 1
ARD ARD/ARD' family 4.0 1.6 1
GSDH Glucose / Sorbosone dehydrogenase 3.1 2.3 1
His_leader Histidine operon leader peptide 2.1 3.5 1
Complex1_49kDa Respiratory-chain NADH dehydrogenase, -0.8 4.2 1
YbbR YbbR-like protein 2.6 4.2 1
DUF305 Domain of unknown function (DUF305) 2.6 4.2 1
COX9 Cytochrome c oxidase subunit COX9 2.9 4.6 1
DHHA2 DHHA2 domain 1.4 5.4 1
Trypan_glycop Trypanosome variant surface glycoprot 1.5 5.9 1
DARPP-32 Protein phosphatase inhibitor 1/DARPP 0.8 6.1 1
Big_1 Bacterial Ig-like domain (group 1) 1.0 6.6 1
CBM_3 Cellulose binding domain 2.2 6.7 1
NRPS Nonribosomal peptide synthase 0.2 7 1
NikM Nickel uptake substrate-specific tran 0.2 7.4 1
PfkB pfkB family carbohydrate kinase 0.3 7.9 1
Pex24p Integral peroxisomal membrane peroxin -0.4 7.9 1
Reo_P9 Reovirus P9-like family -1.1 8 1
RTC_insert RNA 3'-terminal phosphate cyclase (RT 1.2 8 1
Flu_M2 Influenza Matrix protein (M2) 0.2 8.4 1
CBM_25 Carbohydrate binding domain (family 2 1.3 8.9 1
PQQ PQQ enzyme repeat 2.3 8.9 1
SBF Sodium Bile acid symporter family 0.6 9.1 1
PepSY Peptidase propeptide and YPEB domain 2.4 9.3 1
DUF1773 Protein of unknown function DUF1773 1.1 9.4 1
PX PX domain 1.0 9.5 1
TFIIH_BTF_p62_N TFIIH p62 subunit, N-terminal domain 1.8 9.5 1
Pex26 Pex26 protein -1.6 9.6 1
Helicase_C Helicase conserved C-terminal domain 1.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
His_leader 1/1 30 45 .. 1 16 [] 2.1 3.5
NikM 1/1 40 46 .. 1 7 [. 0.2 7.4
TNV_CP 1/1 105 123 .. 184 204 .] 4.0 0.51
Helicase_C 1/1 110 134 .. 1 24 [. 1.6 10
DUF305 1/1 128 135 .. 46 53 .] 2.6 4.2
TFIIH_BTF_p62_N 1/1 269 299 .. 56 82 .] 1.8 9.5
Lum_binding 1/1 324 342 .. 27 46 .. 5.8 0.36
Pex24p 1/1 359 374 .. 548 563 .] -0.4 7.9
Flu_M2 1/1 421 433 .. 85 97 .] 0.2 8.4
Reo_P9 1/1 437 447 .. 346 356 .] -1.1 8
Calx-beta 1/1 514 606 .. 8 109 .] 85.5 1.6e-22
RTC_insert 1/1 531 544 .. 101 114 .] 1.2 8
CBM_25 1/1 564 584 .. 67 87 .] 1.3 8.9
DHHA2 1/1 586 594 .. 162 170 .] 1.4 5.4
YbbR 1/1 596 624 .. 61 93 .] 2.6 4.2
DUF137 1/1 618 627 .. 126 135 .. 4.3 1.1
Lectin_legB 1/1 628 843 .. 1 268 [] 246.3 7.5e-71
DUF416 1/1 630 643 .. 1 14 [. 4.1 0.93
Trypan_glycop 1/1 813 836 .. 193 216 .. 1.5 5.9
DARPP-32 1/1 830 851 .. 1 23 [. 0.8 6.1
Homoserine_dh 1/1 890 914 .. 1 26 [. 5.9 0.31
PX 1/1 925 941 .. 114 131 .] 1.0 9.5
Big_1 1/1 969 986 .. 89 106 .] 1.0 6.6
SBF 1/1 1038 1050 .. 196 208 .] 0.6 9.1
DUF1773 1/1 1065 1073 .. 28 36 .. 1.1 9.4
Pex26 1/1 1099 1111 .. 298 310 .] -1.6 9.6
COX9 1/1 1115 1124 .. 1 10 [. 2.9 4.6
ARD 1/1 1123 1133 .. 158 168 .] 4.0 1.6
GSDH 1/1 1136 1149 .. 13 26 .. 3.1 2.3
YadA 1/1 1139 1148 .. 71 80 .] 3.7 1.5
Complex1_49kDa 1/1 1197 1204 .. 268 275 .] -0.8 4.2
PepSY 1/1 1207 1241 .. 26 68 .] 2.4 9.3
CBM_3 1/1 1244 1267 .. 65 92 .] 2.2 6.7
PfkB 1/1 1244 1263 .. 232 250 .. 0.3 7.9
PQQ 1/1 1249 1269 .. 1 20 [. 2.3 8.9
NRPS 1/1 1250 1258 .. 54 62 .] 0.2 7
Alignments of top-scoring domains:
His_leader: domain 1 of 1, from 30 to 45: score 2.1, E = 3.5
*->mnrvqFknHHHHHHPD<-*
m+r q k+ HP
gi|3247195 30 MTRLQSKRKPAFAHPQ 45
NikM: domain 1 of 1, from 40 to 46: score 0.2, E = 7.4
*->AqAHfqW<-*
A+AH qW
gi|3247195 40 AFAHPQW 46
TNV_CP: domain 1 of 1, from 105 to 123: score 4.0, E = 0.51
CS ES-SS-..EEEEEEEEEEE--
*->gdkvagGPqydlgvelvYtDa<-*
+ k++g + ++gve v +D
gi|3247195 105 SEKLTG--LMRSGVEFVLLDG 123
Helicase_C: domain 1 of 1, from 110 to 134: score 1.6, E = 10
CS HHH TT-EEEEETTSSHHHHHHHHH
*->llk.pgikvarlhGglsqeeReeil<-*
l + g++++ l+G++++ +++ ++
gi|3247195 110 GLMrSGVEFVLLDGKTPAIDQMTAI 134
DUF305: domain 1 of 1, from 128 to 135: score 2.6, E = 4.2
*->IaqMrgWL<-*
I+qM+++L
gi|3247195 128 IDQMTAIL 135
TFIIH_BTF_p62_N: domain 1 of 1, from 269 to 299: score 1.8, E = 9.5
CS TSSS-EEEE E- ....SSS-CCEEETTT
*->ssaKvmLrl...vl.kpeaknddpatfvfsn<-*
+s++++L+++++v++ +++++d at +f+
gi|3247195 269 GSEQMQLQVggeVVqTWNNIGGDVATRQFQT 299
Lum_binding: domain 1 of 1, from 324 to 342: score 5.8, E = 0.36
*->pdkdLtkvligKdsIavNGi<-*
p++ ++++l+ dsI+vNG+
gi|3247195 324 PSQGIDRNLVV-DSITVNGV 342
Pex24p: domain 1 of 1, from 359 to 374: score -0.4, E = 7.9
*->ktdsfrkytRRRrWiR<-*
++d++ + +RR +Wi+
gi|3247195 359 EEDGVAPGFRRSEWIH 374
Flu_M2: domain 1 of 1, from 421 to 433: score 0.2, E = 8.4
*->dvDdGHFvniELE<-*
d+D G Fv ++ E
gi|3247195 421 DIDTGEFVKLDFE 433
Reo_P9: domain 1 of 1, from 437 to 447: score -1.1, E = 8
*->kvDlSkidfdv<-*
+vD+S+i +
gi|3247195 437 TVDISQIQIRF 447
Calx-beta: domain 1 of 1, from 514 to 606: score 85.5, E = 1.6e-22
*->dddagvvgFeptvyqVsVlEndGevevcVvrmggapelrrtVtVsyr
++++g++++e ++++V +E+ G++ + V+r gg ++ tV+y
gi|3247195 514 PTNPGTISLETSNVTV--DEDAGTALIQVIRSGG---SDGIATVDYD 555
TeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdvyEgdEnF
T GTAt+G +DY+ ++gt LtF +g+ te++i v+i+DD +E++E F
gi|3247195 556 TFAGTATEG--VDYTRQTGT-LTFADGV-TEQTIVVPILDDALLENNESF 601
fvrLs<-*
+ ++
gi|3247195 602 NITID 606
RTC_insert: domain 1 of 1, from 531 to 544: score 1.2, E = 8
*->eeAAkeLLeelesG<-*
e+A ++L++ ++sG
gi|3247195 531 EDAGTALIQVIRSG 544
CBM_25: domain 1 of 1, from 564 to 584: score 1.3, E = 8.9
*->gaNYafssGvnTvadGvvgrg<-*
g +Y+ +G+ T adGv +
gi|3247195 564 GVDYTRQTGTLTFADGVTEQT 584
DHHA2: domain 1 of 1, from 586 to 594: score 1.4, E = 5.4
CS THHHHHCCH
*->vVPlLeeal<-*
vVP+L +al
gi|3247195 586 VVPILDDAL 594
YbbR: domain 1 of 1, from 596 to 624: score 2.6, E = 4.2
*->ehsvsvtvsllapdgnvevevnvtiPstvtVti<-*
e++ s++++ ++ g+++++v P t tV+i
gi|3247195 596 ENNESFNITIDNVQGGANLLV----PRTATVSI 624
DUF137: domain 1 of 1, from 618 to 627: score 4.3, E = 1.1
*->rtAtiTIVDN<-*
rtAt++IVDN
gi|3247195 618 RTATVSIVDN 627
Lectin_legB: domain 1 of 1, from 628 to 843: score 246.3, E = 7.5e-71
CS EEEEEEESSBSTTC....TTEEEEET-EEETTSEEESS.-BCTTSEB
*->etvsFnyngFtsnqrpslsNLtLqGdAtvspnGlLqLTPnvtnnppp
e + +ny +F ++ s LtL+G+A+ ++++L+LT + n
gi|3247195 628 EVSLPNYASF-ADV----SGLTLNGTARQ-TGDTLELT-QALN---- 663
CS S.TTEEEEEEESS-EE-...BETTTTEBEEEEEEEEEEEEES..TTSS-B
qitnsaGRAlYskPirlleswdsstgkvaSFsTsFvFaIknlpsksgngG
n+aG A+Ys+ ++l t+ SF+T F F+ +n +++g+
gi|3247195 664 ---NQAGSAFYSTAVNL-------TND-GSFRTAFAFRAMNG--AGTDGA 700
CS EEEEEEEEETT--S.TTBSSGGGTTTSSTTSTTGGGGCCEEEEEEETST.
dGLAFflaPsdtqdppgassggyLGLfNssnngdnpsNhiVAVEFDTvlN
dGL+F+++++++ + ++sg+ LG ++ + ++VA+EFDT++
gi|3247195 701 DGLTFTIQNDPRGATAIGGSGEELGYQD--------ITNSVAIEFDTYR- 741
CS GGGTTTS.SSSEEEEEESSSS-SEE...........EEEESGHHTTTSEE
kefnDiDdnyNHVGIDvNSikSvasesAgYYddddGsfvnldLnSyGkpi
++ D +d NHV I +S++S++ + + ++dLn+ G+p
gi|3247195 742 -NSLDLND--NHVSILTGSVYSNVRTAVP----------EIDLNN-GSPR 777
CS EEEEEEETTTTEEEEEEEET..T..TTTEEEEEEEE--HHHHS-SEEEEE
qVwIdYDgsskrLsVtlaypptnvasKPkrplLSasvDLstvLpewvyVG
+w++Y+g+s++L V+l+ + +KP+++l+ a++DL+t +++ +VG
gi|3247195 778 YAWVEYNGTSNVLAVYLSDD--A--TKPTHALMKATIDLHTQVGDAGFVG 823
CS EEEEE.ESBSEEEEEEEEEEE
FSAsTgGlltesHyvLsWSFs<-*
F+A+T G+ ++sH++L+W+
gi|3247195 824 FTAGT-GGRDNSHRILNWTVD 843
DUF416: domain 1 of 1, from 630 to 643: score 4.1, E = 0.93
*->MyPNYaLFceatef<-*
++PNYa F++++++
gi|3247195 630 SLPNYASFADVSGL 643
Trypan_glycop: domain 1 of 1, from 813 to 836: score 1.5, E = 5.9
CS TTTCETTCETT---BSSCCCCTEC
*->tdkitkagftkltaktdaaaaggd<-*
++++++agf ++ta+t++++++++
gi|3247195 813 HTQVGDAGFVGFTAGTGGRDNSHR 836
DARPP-32: domain 1 of 1, from 830 to 851: score 0.8, E = 6.1
*->mEqDnsPRKiqFtvPLLEPHLDP<-*
Dns R + +tv +P LDP
gi|3247195 830 -GRDNSHRILNWTVDQSDPPLDP 851
Homoserine_dh: domain 1 of 1, from 890 to 914: score 5.9, E = 0.31
CS SHHHHHHHHHHHT--EEEEEEE--HH
*->PIIktLrelLaagDrIlkieGIlNGT<-*
++kt+r++ a D i+GI+NGT
gi|3247195 890 -VVKTVRGGAVASDPFIDISGIVNGT 914
PX: domain 1 of 1, from 925 to 941: score 1.0, E = 9.5
CS SCHHHHHSHHHHHHHC-S
*->hPelsnesevvldFLesd<-*
hP ++n ++ v+ ++ d
gi|3247195 925 HPDFAN-NPYVYLLFTYD 941
Big_1: domain 1 of 1, from 969 to 986: score 1.0, E = 6.6
CS EEEEET.TECEEEEEEEE
*->VtAslanngatsvdaktV<-*
VtA++an++ t+v ++V
gi|3247195 969 VTADVANDYQTAVAGSEV 986
SBF: domain 1 of 1, from 1038 to 1050: score 0.6, E = 9.1
*->vifalngeviasl<-*
++f++nge+++s+
gi|3247195 1038 LAFGINGELFVSI 1050
DUF1773: domain 1 of 1, from 1065 to 1073: score 1.1, E = 9.4
*->sveDIDnLs<-*
+v+DID+Ls
gi|3247195 1065 RVQDIDSLS 1073
Pex26: domain 1 of 1, from 1099 to 1111: score -1.6, E = 9.6
*->AalsRLYqLalRD<-*
A s++YqL lR
gi|3247195 1099 ANRSKVYQLGLRN 1111
COX9: domain 1 of 1, from 1115 to 1124: score 2.9, E = 4.6
*->mAiaPITGmL<-*
m + P+TG L
gi|3247195 1115 MSVDPVTGRL 1124
ARD: domain 1 of 1, from 1123 to 1133: score 4.0, E = 1.6
*->RLFvtkpkWta<-*
RLFv++++Wt
gi|3247195 1123 RLFVGDVGWTK 1133
GSDH: domain 1 of 1, from 1136 to 1149: score 3.1, E = 2.3
*->ElNliqkGkNYGWP<-*
E+N +G+N GWP
gi|3247195 1136 EINSAGAGANFGWP 1149
YadA: domain 1 of 1, from 1139 to 1148: score 3.7, E = 1.5
*->gagaGvGYqW<-*
+agaG++++W
gi|3247195 1139 SAGAGANFGW 1148
Complex1_49kDa: domain 1 of 1, from 1197 to 1204: score -0.8, E = 4.2
*->iVfGeVDR<-*
iV+G+V R
gi|3247195 1197 IVMGDVYR 1204
PepSY: domain 1 of 1, from 1207 to 1241: score 2.4, E = 9.3
*->lddedkkdealglggtvvyvvv.dddg.rlevyvDaytGevlgve<-
l ++d +t +++ + ++g +++ +vDa tG++++v
gi|3247195 1207 LYGDD---------YTGDVFFNdLGQGiVRHGDVDA-TGAITNVQ 1241
*
gi|3247195 - -
CBM_3: domain 1 of 1, from 1244 to 1267: score 2.2, E = 6.7
CS ECGCCEEEEEEEEEEEETTGCEEEEEEE
*->nynsnvtgsFvklsppdagnadyYvEig<-*
++++++ +v s+ +g a yYv ++
gi|3247195 1244 TTGAGA---VVAISQGPDG-ALYYVDLD 1267
PfkB: domain 1 of 1, from 1244 to 1263: score 0.3, E = 7.9
CS TTS- SEEEEEETTEEEEEE
*->akga.klvivTlGkdGallv<-*
++ga+ +v++++G+dGal++
gi|3247195 1244 TTGAgAVVAISQGPDGALYY 1263
PQQ: domain 1 of 1, from 1249 to 1269: score 2.3, E = 8.9
CS TEEEEE TTTSEEEEEETTTT
*->gvvyvg.tadGylyAlDakTG<-*
vv + +++dG ly +D+++G
gi|3247195 1249 AVVAISqGPDGALYYVDLDDG 1269
NRPS: domain 1 of 1, from 1250 to 1258: score 0.2, E = 7
*->vygiSQTPQ<-*
v +iSQ+P
gi|3247195 1250 VVAISQGPD 1258
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