hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 33593845.fa
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Query sequence: gi|33593845|ref|NP_881489.1|
Accession: [none]
Description: adhesin [Bordetella pertussis Tohama I]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Fil_haemagg Haemagluttinin repeat 152.6 2.8e-43 16
Haemagg_act haemagglutination activity domain 115.0 6.1e-33 1
DUF2190 Uncharacterized conserved protein (DU 7.0 0.17 1
RHS_repeat RHS Repeat 8.2 0.18 2
LEA_1 Late embryogenesis abundant (LEA) gro 8.5 0.18 1
P_gingi_FimA Porphyromonas gingivalis major fimbri 3.1 0.2 1
HupH_C HupH hydrogenase expression protein, 5.1 0.24 1
DUF2604 Protein of Unknown function (DUF2604) 5.2 0.39 1
WWbp WW-domain ligand protein 4.1 0.42 1
DUF2600 Protein of unknown function (DUF2600) 4.1 0.45 1
HutD HutD 4.9 0.46 1
DUF490 Family of unknown function (DUF490) 4.1 0.61 1
Strep_SA_rep Streptococcal surface antigen repeat 6.6 0.73 2
Ribosomal_L32e Ribosomal protein L32 4.0 0.79 1
DUF1669 Protein of unknown function (DUF1669) 3.2 0.86 1
Pentapeptide Pentapeptide repeats (8 copies) 6.4 0.87 1
Phage_Capsid_P3 P3 major capsid protein 2.0 0.98 1
CDC48_N Cell division protein 48 (CDC48), N-t 4.4 1.2 1
HMG_box HMG (high mobility group) box 5.0 1.4 1
Hpt Hpt domain 5.0 1.4 1
AHS2 Allophanate hydrolase subunit 2 2.4 1.4 1
Enolase_N Enolase, N-terminal domain 3.2 1.5 1
GlcNAc_2-epim N-acylglucosamine 2-epimerase (GlcNAc 1.5 1.6 1
Androgen_recep Androgen receptor 0.9 1.6 1
DPBB_1 Rare lipoprotein A (RlpA)-like double 4.1 1.8 1
COLFI Fibrillar collagen C-terminal domain 0.1 2.1 1
CM_1 Chorismate mutase type I 2.7 2.2 1
MmgE_PrpD MmgE/PrpD family 2.1 2.3 1
AIRS AIR synthase related protein, N-termi 2.8 2.3 2
Acylphosphatase Acylphosphatase 4.3 2.3 1
CbbQ_C CbbQ/NirQ/NorQ C-terminal 3.6 2.3 2
Ery_res_leader1 Erythromycin resistance leader peptid 5.8 2.6 1
Nrf1_activ_bdg Nrf1 activator activation site bindin 3.3 2.9 1
DUF1643 Protein of unknown function (DUF1643) 0.2 3 1
AD Anticodon-binding domain 3.6 3.1 1
UPF0164 Uncharacterised protein family (UPF01 1.0 3.3 1
HSP70 Hsp70 protein 0.8 3.4 1
PseudoU_synth_1 tRNA pseudouridine synthase 2.0 3.4 1
IATP Mitochondrial ATPase inhibitor, IATP 3.7 3.5 1
Treacle Treacher Collins syndrome protein Tre -0.2 3.5 1
DUF1534 Protein of unknown function (DUF1534) 2.9 3.7 1
SPO11_like SPO11 homologue 2.7 3.9 1
DUF1840 Domain of unknown function (DUF1840) 2.2 3.9 1
PAD_M Protein-arginine deiminase (PAD) midd 1.1 4 1
Alpha-amyl_C Alpha-amylase, C terminal 4.0 4 1
Type_III_YscP Type III secretion system (type_III_ 1.9 4.1 1
HNF-1A_C Hepatocyte nuclear factor 1 (HNF-1), 1.8 4.4 1
ADK Adenylate kinase 1.4 4.7 1
Orexin Prepro-orexin 0.8 4.8 1
DUF541 Protein of unknown function (DUF541) 1.7 5 1
NaeI Restriction endonuclease NaeI 0.5 5.1 1
FlgD Flagellar hook capping protein 1.5 5.1 1
Herpes_UL82_83 Betaherpesvirus UL82/83 protein N ter 0.5 5.1 1
DUF2398 Protein of unknown function (DUF2398) -0.2 5.2 1
DUF1885 Domain of unknown function (DUF1885) 1.3 5.2 1
Entericidin Entericidin EcnA/B family 3.6 5.4 1
Nairovirus_M Nairovirus M polyprotein-like -1.9 5.5 1
TraS Plasmid conjugative transfer entry ex -0.0 5.5 1
ATP-synt_ab ATP synthase alpha/beta family, nucle 0.9 5.5 1
RNR_N Ribonucleotide reductase N-terminal 2.1 5.7 1
LolB Outer membrane lipoprotein LolB 1.5 5.8 1
DCD 2'-deoxycytidine 5'-triphosphate deam -0.8 5.9 1
Dala_Dala_lig_C D-ala D-ala ligase C-terminus 1.5 6.1 1
DUF1098 Protein of unknown function (DUF1098) 2.8 6.1 1
DUF1741 Domain of unknown function (DUF1741) 0.8 6.2 1
DUF1109 Protein of unknown function (DUF1109) 0.1 6.3 1
DUF166 Uncharacterized ArCR, COG1810 -0.2 6.3 1
FbpA Fibronectin-binding protein A N-termi -0.3 6.5 1
Transposase_20 Transposase IS116/IS110/IS902 family 2.1 7.1 1
CBFD_NFYB_HMF Histone-like transcription factor (CB 2.3 7.2 1
DNA_pol3_theta DNA polymerase III, theta subunit 1.9 7.4 1
Sigma70_r2 Sigma-70 region 2 2.7 7.4 1
DGOK 2-keto-3-deoxy-galactonokinase -1.6 7.9 1
ATP-grasp_2 ATP-grasp domain -0.4 8.3 1
Big_1 Bacterial Ig-like domain (group 1) 0.7 8.3 1
YopE Yersinia virulence determinant (YopE) 2.0 8.4 1
DUF1205 Protein of unknown function (DUF1205) 0.1 8.4 1
Glyco_hydro_70 Glycosyl hydrolase family 70 -1.4 8.5 1
CagZ CagZ -1.1 8.6 1
DUF917 Protein of unknown function (DUF917) -0.1 8.8 1
Autoind_synth Autoinducer synthetase 0.3 8.8 2
Flavi_M Flavivirus envelope glycoprotein M 1.2 8.8 1
Phage-MuB_C Mu B transposition protein, C termina 2.0 9 1
Carot_N Orange carotenoid protein, N-terminal 0.6 9.1 1
HTH_DeoR DeoR-like helix-turn-helix domain 2.1 9.3 1
DUF500 Family of unknown function (DUF500) 1.2 9.4 1
FERM_C FERM C-terminal PH-like domain 0.9 9.5 1
DUF547 Protein of unknown function, DUF547 1.0 9.6 1
Pectate_lyase Pectate lyase -0.3 9.6 1
Head_binding Head binding -0.0 9.9 1
BtpA BtpA family -0.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Haemagg_act 1/1 46 180 .. 1 134 [. 115.0 6.1e-33
Orexin 1/1 48 62 .. 117 131 .] 0.8 4.8
COLFI 1/1 54 67 .. 1 15 [. 0.1 2.1
Dala_Dala_lig_C 1/1 202 216 .. 210 224 .] 1.5 6.1
Fil_haemagg 1/16 234 315 .. 1 75 [] 26.5 6.7e-07
DUF1098 1/1 244 268 .. 1 25 [. 2.8 6.1
Entericidin 1/1 262 271 .. 34 43 .] 3.6 5.4
DUF2190 1/1 323 345 .. 73 97 .. 7.0 0.17
Fil_haemagg 2/16 324 383 .. 1 75 [] 3.8 2.2
Fil_haemagg 3/16 393 453 .. 1 75 [] 5.2 0.92
ATP-synt_ab 1/1 439 448 .. 202 211 .] 0.9 5.5
NaeI 1/1 446 465 .. 1 21 [. 0.5 5.1
DUF1534 1/1 462 481 .. 39 61 .] 2.9 3.7
P_gingi_FimA 1/1 479 498 .. 1 21 [. 3.1 0.2
DUF1669 1/1 500 507 .. 302 309 .] 3.2 0.86
Fil_haemagg 4/16 502 525 .. 25 48 .. 0.6 20
Fil_haemagg 5/16 526 607 .. 1 75 [] 6.3 0.43
Phage-MuB_C 1/1 569 587 .. 46 63 .. 2.0 9
Fil_haemagg 6/16 611 670 .. 1 75 [] 13.6 0.0034
Phage_Capsid_P3 1/1 627 655 .. 366 394 .] 2.0 0.98
Big_1 1/1 651 678 .. 78 106 .] 0.7 8.3
Fil_haemagg 7/16 673 744 .. 1 75 [] 22.5 9.5e-06
RHS_repeat 1/2 687 701 .. 25 44 .] 1.3 17
DCD 1/1 708 740 .. 1 33 [. -0.8 5.9
Pectate_lyase 1/1 740 773 .. 1 38 [. -0.3 9.6
DUF1741 1/1 744 755 .. 282 293 .] 0.8 6.2
Fil_haemagg 8/16 755 811 .. 1 75 [] 12.2 0.0088
YopE 1/1 775 784 .. 61 70 .] 2.0 8.4
DUF1840 1/1 794 809 .. 8 23 .. 2.2 3.9
Hpt 1/1 808 850 .. 48 108 .] 5.0 1.4
CBFD_NFYB_HMF 1/1 810 825 .. 51 66 .] 2.3 7.2
Fil_haemagg 9/16 816 870 .. 1 75 [] 8.1 0.13
Fil_haemagg 10/16 878 928 .. 1 75 [] 19.3 8e-05
Fil_haemagg 11/16 931 958 .. 1 33 [. 0.9 16
DUF500 1/1 939 955 .. 26 42 .. 1.2 9.4
DUF490 1/1 940 970 .. 1 39 [. 4.1 0.61
PAD_M 1/1 962 969 .. 1 8 [. 1.1 4
Nrf1_activ_bdg 1/1 973 988 .. 103 118 .] 3.3 2.9
Fil_haemagg 12/16 974 1031 .. 1 75 [] 22.4 1e-05
HutD 1/1 1011 1039 .. 168 200 .] 4.9 0.46
Ery_res_leader1 1/1 1034 1047 .. 1 17 [] 5.8 2.6
Fil_haemagg 13/16 1036 1110 .. 1 75 [] 4.0 2.1
CDC48_N 1/1 1060 1078 .. 1 19 [. 4.4 1.2
Androgen_recep 1/1 1104 1137 .. 427 460 .] 0.9 1.6
Fil_haemagg 14/16 1141 1181 .. 34 75 .] 6.2 0.46
RNR_N 1/1 1222 1245 .. 32 55 .. 2.1 5.7
Nairovirus_M 1/1 1286 1296 .. 1 11 [. -1.9 5.5
HMG_box 1/1 1300 1316 .. 53 69 .] 5.0 1.4
Strep_SA_rep 1/2 1300 1323 .. 1 25 [] 5.7 1.3
HSP70 1/1 1301 1370 .. 545 619 .] 0.8 3.4
PseudoU_synth_1 1/1 1304 1344 .. 72 125 .] 2.0 3.4
MmgE_PrpD 1/1 1306 1335 .. 1 33 [. 2.1 2.3
Transposase_20 1/1 1329 1343 .. 73 88 .] 2.1 7.1
AD 1/1 1338 1371 .. 9 42 .. 3.6 3.1
Strep_SA_rep 2/2 1341 1365 .. 1 25 [] 0.9 31
CbbQ_C 1/2 1355 1369 .. 72 86 .] 0.2 23
Enolase_N 1/1 1359 1380 .. 1 22 [. 3.2 1.5
CM_1 1/1 1426 1434 .. 110 118 .] 2.7 2.2
Head_binding 1/1 1587 1603 .. 96 114 .] -0.0 9.9
DUF166 1/1 1615 1627 .. 252 264 .] -0.2 6.3
DUF547 1/1 1665 1675 .. 143 153 .] 1.0 9.6
IATP 1/1 1698 1712 .. 14 28 .. 3.7 3.5
FlgD 1/1 1713 1753 .. 97 155 .] 1.5 5.1
DGOK 1/1 1772 1785 .. 285 298 .] -1.6 7.9
CbbQ_C 2/2 1773 1788 .. 71 86 .] 3.5 2.6
RHS_repeat 2/2 1801 1814 .. 1 14 [. 6.9 0.41
Pentapeptide 1/1 1890 1904 .. 26 40 .] 6.4 0.87
CagZ 1/1 1941 1954 .. 186 199 .] -1.1 8.6
DUF2604 1/1 1949 1959 .. 66 76 .] 5.2 0.39
Fil_haemagg 15/16 1967 2067 .. 1 75 [] 0.7 18
DNA_pol3_theta 1/1 1994 2007 .. 49 62 .. 1.9 7.4
Glyco_hydro_70 1/1 2033 2044 .. 457 468 .. -1.4 8.5
DUF541 1/1 2115 2137 .. 1 23 [. 1.7 5
Fil_haemagg 16/16 2156 2198 .. 1 45 [. 0.5 21
LEA_1 1/1 2269 2293 .. 50 73 .] 8.5 0.18
WWbp 1/1 2299 2310 .. 1 12 [. 4.1 0.42
ATP-grasp_2 1/1 2368 2376 .. 131 139 .. -0.4 8.3
TraS 1/1 2372 2391 .. 145 164 .] -0.0 5.5
GlcNAc_2-epim 1/1 2446 2472 .. 1 25 [. 1.5 1.6
Sigma70_r2 1/1 2549 2572 .. 48 71 .] 2.7 7.4
DUF1643 1/1 2594 2599 .. 147 152 .] 0.2 3
FbpA 1/1 2626 2644 .. 1 19 [. -0.3 6.5
DUF1109 1/1 2673 2684 .. 1 13 [. 0.1 6.3
Flavi_M 1/1 2756 2762 .. 69 75 .] 1.2 8.8
BtpA 1/1 2804 2822 .. 258 276 .] -0.2 10
Herpes_UL82_83 1/1 2804 2826 .. 1 23 [. 0.5 5.1
AIRS 1/2 3027 3036 .. 115 124 .] 0.0 16
SPO11_like 1/1 3191 3205 .. 29 43 .] 2.7 3.9
FERM_C 1/1 3300 3310 .. 86 96 .] 0.9 9.5
DUF2600 1/1 3363 3377 .. 1 15 [. 4.1 0.45
UPF0164 1/1 3405 3434 .. 313 345 .] 1.0 3.3
DPBB_1 1/1 3423 3440 .. 1 18 [. 4.1 1.8
Treacle 1/1 3436 3451 .. 495 510 .] -0.2 3.5
Acylphosphatase 1/1 3472 3499 .. 50 76 .. 4.3 2.3
DUF2398 1/1 3513 3526 .. 1 14 [. -0.2 5.2
Autoind_synth 1/2 3534 3549 .. 172 187 .] 0.3 9.3
DUF1885 1/1 3619 3624 .. 138 143 .] 1.3 5.2
AHS2 1/1 3723 3742 .. 273 292 .] 2.4 1.4
HupH_C 1/1 3730 3742 .. 111 123 .] 5.1 0.24
HTH_DeoR 1/1 3733 3745 .. 1 13 [. 2.1 9.3
LolB 1/1 3779 3785 .. 163 169 .] 1.5 5.8
AIRS 2/2 3875 3885 .. 114 124 .] 2.7 2.3
HNF-1A_C 1/1 3890 3897 .. 83 90 .] 1.8 4.4
Autoind_synth 2/2 3944 3959 .. 172 187 .] 0.1 10
Type_III_YscP 1/1 3961 3980 .. 1 26 [. 1.9 4.1
DUF1205 1/1 4026 4033 .. 104 111 .] 0.1 8.4
ADK 1/1 4034 4042 .. 144 152 .] 1.4 4.7
Alpha-amyl_C 1/1 4045 4051 .. 62 68 .] 4.0 4
DUF917 1/1 4070 4080 .. 1 11 [. -0.1 8.8
Ribosomal_L32e 1/1 4071 4101 .. 68 96 .. 4.0 0.79
Carot_N 1/1 4180 4190 .. 155 165 .] 0.6 9.1
Alignments of top-scoring domains:
Haemagg_act: domain 1 of 1, from 46 to 180: score 115.0, E = 6.1e-33
CS X---EE-TT-EEE-... -TTS--EEE-----TTSEEEEEEEE--B
*->aqslpdgglvtngtvti..qatgvpitggtipqtsgnlfisfssFnV
a ++ +gg +g++ + ++ +gvp++ +++p +g++++++++FnV
gi|3359384 46 AGAAAAGGIAPQGATQVapARNGVPVIQIAAPDATGISHNRYTEFNV 92
CS -TTEEEEEE-SS EEETTTEEE---TT-.SS--SEEEEEE-SS--EEEEE
gqggtvlFnatq.gqSqLgGnltgNpnLapgaasnIlNRVTGgnaSqIqG
q g+vl+n+t +g S L+G + gNp L g a++IlN+VTG ++ + G
gi|3359384 93 RQPGVVLNNSTAeGVSALAGRISGNPGL-RGPARAILNEVTGVSPTTLEG 141
CS EEEEEE.S-EEEEEE-TT-EEEEEEEEESEEEEEEE-SEE
llevlGganAnVfLaNPNGIifgggAfiNvgglfvtTgai<-*
+lev+G A+V aNPNG + +g ++iN++gl+++Tg +
gi|3359384 142 ALEVFG-PAADVLVANPNGLTANGLSTINIRGLTLSTGRP 180
Orexin: domain 1 of 1, from 48 to 62: score 0.8, E = 4.8
*->aAaAsalAPrGrsrv<-*
aAaA +AP+G +v
gi|3359384 48 AAAAGGIAPQGATQV 62
COLFI: domain 1 of 1, from 54 to 67: score 0.1, E = 2.1
*->lksPeGksrknPARt<-*
++P+G ++ +PAR+
gi|3359384 54 -IAPQGATQVAPARN 67
Dala_Dala_lig_C: domain 1 of 1, from 202 to 216: score 1.5, E = 6.1
CS CTT-HHHHHHHHHHC
*->aaGlsyedLidqLie<-*
+aGlsy dL+++ +
gi|3359384 202 TAGLSYFDLVARTVA 216
Fil_haemagg: domain 1 of 16, from 234 to 315: score 26.5, E = 6.7e-07
CS EEESSEEEETT TT--EE-SEE
*->vaaGaltlnaa..........................alggldlnng
v+aGa++++ +++++ ++++++ ++ + ++ +++a+g+++ +++
gi|3359384 234 VVAGANRYDYGrrtrlqptgrpaaapdasaghaidgsAAGAMYGRHI 280
CS EEEE-STT-EEEE-S-EEESSE...................EEEEESS-E
gtlsagggltltaagllnnggtliaggdlllaagalrnggdltltaaGdL
++s+++gl+++ +gl ++g ++++aaG +
gi|3359384 281 TLVSSDAGLGARHRGLVSAAGH-------------------IAIDAAGGV 311
CS EEEE
dnsg<-*
++++
gi|3359384 312 SVQA 315
DUF1098: domain 1 of 1, from 244 to 268: score 2.8, E = 6.1
*->rrnrrrrrptrdvsfdpvdnvnein<-*
+r+ r +++ r+ + ++ ++++i+
gi|3359384 244 GRRTRLQPTGRPAAAPDASAGHAID 268
Entericidin: domain 1 of 1, from 262 to 271: score 3.6, E = 5.4
*->saGeAiedaA<-*
saG+Ai+++A
gi|3359384 262 SAGHAIDGSA 271
DUF2190: domain 1 of 1, from 323 to 345: score 7.0, E = 0.17
*->DdTngekvvtttAtgNtliGvAwaa<-*
D T+ + +t+ A+g++liG+++a+
gi|3359384 323 DGTA--GSATIRAGGDALIGSVIAF 345
Fil_haemagg: domain 2 of 16, from 324 to 383: score 3.8, E = 2.2
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EE ESSE...
*->vaaGaltlnaaalggldlnnggtlsagggltltaaglln.nggtlia
+aG+ t++a+ +d+ g ++ gg++ ++aa+ +g+l a
gi|3359384 324 GTAGSATIRAG----GDALIGSVIAFGGDIEVRAAAGRIaTHGALNA 366
CS ................EEEEESS-EEEEE
ggdlllaagalrnggdltltaaGdLdnsg<-*
+ + ++l a+++L ++g
gi|3359384 367 PRG-----------R-VRLQAGDALAVHG 383
Fil_haemagg: domain 3 of 16, from 393 to 453: score 5.2, E = 0.92
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
++ G+ +++a+ + +++ g++l a+++ +++ ia+
gi|3359384 393 ATRGDASIAAD-----------LHATRDGVSLAARNATLAHARVIAT 428
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg....dltltaaGdLdnsg<-*
+++++++++++ ++ +G+L+++g
gi|3359384 429 PP-------AAQARpstpAIDIALSGTLTLRG 453
ATP-synt_ab: domain 1 of 1, from 439 to 448: score 0.9, E = 5.5
CS S-B-TTT-B-
RF xxxxxxxxxx
*->PAIDvllSvS<-*
PAID+ lS++
gi|3359384 439 PAIDIALSGT 448
NaeI: domain 1 of 1, from 446 to 465: score 0.5, E = 5.1
CS HHHHHHHHHHHHHHSSSSHHH
*->DdeLlrvartfaelDPDGrrl<-*
+ l ++ t+ ++D DGrr+
gi|3359384 446 -SGTLTLRGTLHDADGDGRRI 465
DUF1534: domain 1 of 1, from 462 to 481: score 2.9, E = 3.7
*->GRgasrtaslrvqngaptrsvvr<-*
GR+ ++t++ + ng+p+ +v
gi|3359384 462 GRRIEGTSV-ALANGMPV--IVD 481
P_gingi_FimA: domain 1 of 1, from 479 to 498: score 3.1, E = 0.2
*->vlktSnpnRafePnGlgdddA<-*
++ t p+Ra+ Pn l+ +dA
gi|3359384 479 IVDTRQPQRAV-PNALLASDA 498
DUF1669: domain 1 of 1, from 500 to 507: score 3.2, E = 0.86
*->LYAqSkPv<-*
LYA+S+P+
gi|3359384 500 LYAASQPI 507
Fil_haemagg: domain 4 of 16, from 502 to 525: score 0.6, E = 20
CS E-STT-EEEE-S-EEESSE.....
*->sagggltltaagllnnggtliagg<-*
+a++ ++++aagl n gg+++++g
gi|3359384 502 AASQPISIRAAGLRNEGGAIDSTG 525
Fil_haemagg: domain 5 of 16, from 526 to 607: score 6.3, E = 0.43
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+ G l+++ + + n g +++ g+l +t g+l n l+++
gi|3359384 526 TGQGHIGLRIG----GPAVNLGYIATHGTLEATVDGTLEN-RMLLSA 567
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg............dltltaaGdLdnsg<-*
++l++a+ l+n + +++++++++l l+ + +++n+g
gi|3359384 568 AALRVATHDLSNHAamtasgpdtgtpALDLSVQHRVENAG 607
Phage-MuB_C: domain 1 of 1, from 569 to 587: score 2.0, E = 9
CS SHHHHHHHH GGGT-TT-T
*->aLRiLtqtL.RlAaMtAkG<-*
aLR+ t+ L++ AaMtA+G
gi|3359384 569 ALRVATHDLsNHAAMTASG 587
Fil_haemagg: domain 6 of 16, from 611 to 670: score 13.6, E = 0.0034
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+a Gal+l+ + ++ + n+ + + g + aa+ l+n+gtl+++
gi|3359384 611 AARGALRLRGG-AELSIVNQPAGFMLAHG-QDIAAARLANAGTLSST 655
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
++ +tlt aGdL+nsg
gi|3359384 656 AA-------------GTLTLAGDLENSG 670
Phage_Capsid_P3: domain 1 of 1, from 627 to 655: score 2.0, E = 0.98
CS -TTEEEEEEEEEEEESB-----------X
*->vnqnARLLmGYEYFtsRtELvnAGtistt<-*
vnq A ++ + L nAGt+s t
gi|3359384 627 VNQPAGFMLAHGQDIAAARLANAGTLSST 655
Big_1: domain 1 of 1, from 651 to 678: score 0.7, E = 8.3
CS EEE-SS-EEEEEEEEET.TECEEEEEEEE
*->tLTstkaGtytVtAslanngatsvdaktV<-*
tL+st aGt t +l+ n+++ + a ++
gi|3359384 651 TLSSTAAGTLTLAGDLE-NSGVLQSAHAL 678
Fil_haemagg: domain 7 of 16, from 673 to 744: score 22.5, E = 9.5e-06
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
++a+al+++a + + ++ +t g+gltl a + l+ +g ++++
gi|3359384 673 QSAHALRVQAR--RIASRGRLATATDGAGLTLAADENLTLAGRTSSA 717
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
g+ll+ aga+ ++ +++ta+ dL++++
gi|3359384 718 GALLARAGAALVNE-GIVTARQDLSWRA 744
RHS_repeat: domain 1 of 2, from 687 to 701: score 1.3, E = 17
*->aagrltaltlttstdasGtt<-*
++grl ++ td++G t
gi|3359384 687 SRGRLATA-----TDGAGLT 701
DCD: domain 1 of 1, from 708 to 740: score -0.8, E = 5.9
*->lsmTtdadsaGILpdraIeaLiaeekiksaadf<-*
l++ + saG L ra +aL+ e+ ++ d+
gi|3359384 708 LTLAGRTSSAGALLARAGAALVNEGIVTARQDL 740
Pectate_lyase: domain 1 of 1, from 740 to 773: score -0.3, E = 9.6
CS XXXXXXXXX....XXX--EEESS-EEE-TT-EEEEEEE
*->assgvtptvPsteaaaaatvvhdtIeVkaGqvfDGkgq<-*
s + + v aa +vv+ ++ +aGq fD +g+
gi|3359384 740 LSWRARDIV----NDAAGNVVARSVDMRAGQGFDHRGA 773
DUF1741: domain 1 of 1, from 744 to 755: score 0.8, E = 6.2
*->aReaVdDvRklV<-*
aR++V+D+ +V
gi|3359384 744 ARDIVNDAAGNV 755
Fil_haemagg: domain 8 of 16, from 755 to 811: score 12.2, E = 0.0088
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
v+a +++ +a+ ++ g++++ +l+l aa+++ +g+l a
gi|3359384 755 VVARSVDMRAG----QGFDHRGAIGSVTDLVLKAARIDS-AGVLRAN 796
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
+d + +a++++++ +
gi|3359384 797 QD-------------IDMHADDAMRLKA 811
YopE: domain 1 of 1, from 775 to 784: score 2.0, E = 8.4
*->GaaselVasA<-*
G++++lV++A
gi|3359384 775 GSVTDLVLKA 784
DUF1840: domain 1 of 1, from 794 to 809: score 2.2, E = 3.9
*->kaaaDviMlgDlArqL<-*
+a +D+ M++D+A++L
gi|3359384 794 RANQDIDMHADDAMRL 809
Hpt: domain 1 of 1, from 808 to 850: score 5.0, E = 1.4
CS HHHHHHHHTTBHHHHHHHHHHHHHHHTCHCCC.S...HHHHHHHHHH
*->rLKGsagslGldalaelaaelEqalkagedlgqvpadaeavdlllql
rLK +a++l+ ++la +a +lEq a++ +
gi|3359384 808 RLKAGARTLAGRDLALAADQLEQSGMAQAGRT--------------- 839
CS HHHHHHHHHHHCHH
lealrallealraa<-*
l+a+ al+++
gi|3359384 840 ---LTATAGALEND 850
CBFD_NFYB_HMF: domain 1 of 1, from 810 to 825: score 2.3, E = 7.2
CS CTTSSEE-HHHHHHHH
*->kekRKTikaehiklAv<-*
k++++T+++ +++lA
gi|3359384 810 KAGARTLAGRDLALAA 825
Fil_haemagg: domain 9 of 16, from 816 to 870: score 8.1, E = 0.13
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
a+ +l l+a+ +l ++g +ag++lt+ta++l n+g +a
gi|3359384 816 LAGRDLALAAD-----QLEQSGMAQAGRTLTATAGALENDGLLDAAD 857
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
+ l ++ ++ n+g
gi|3359384 858 ---------------AKLRTTRAFVNRG 870
Fil_haemagg: domain 10 of 16, from 878 to 928: score 19.3, E = 8e-05
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+a G + +n+g l +g+ l+l+aag l n+g+ +a+
gi|3359384 878 QAQGP-----------QIRNAGVLRTGALLALQAAGRLENTGGMAAS 913
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
g l+++aaG + nsg
gi|3359384 914 GS-------------LSIAAAGPFANSG 928
Fil_haemagg: domain 11 of 16, from 931 to 958: score 0.9, E = 16
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEE
*->vaaGaltlnaaalggldlnnggtlsagggltlt<-*
a G+ + + + + +n+g++s gg+l+l+
gi|3359384 931 GANGDASFALS-----SFANTGSISVGGDLALR 958
DUF500: domain 1 of 1, from 939 to 955: score 1.2, E = 9.4
*->AVdaFaelGniTLGGnl<-*
A+ +Fa+ G+i+ GG+l
gi|3359384 939 ALSSFANTGSISVGGDL 955
DUF490: domain 1 of 1, from 940 to 970: score 4.1, E = 0.61
*->ldglsatglgggGtltasGtldlaadlpadLtikgvadn<-*
l+++++t G++++ G+l l + ++++Lt+++ d+
gi|3359384 940 LSSFANT-----GSISVGGDLAL-RLPDVELTLDA--DH 970
PAD_M: domain 1 of 1, from 962 to 969: score 1.1, E = 4
CS EEEEEE--
*->VdISLdvD<-*
V+++Ld+D
gi|3359384 962 VELTLDAD 969
Nrf1_activ_bdg: domain 1 of 1, from 973 to 988: score 3.3, E = 2.9
*->avgsegqavqVvtLqd<-*
+v++ ++++qV++L++
gi|3359384 973 PVSQGTTLLQVASLDN 988
Fil_haemagg: domain 12 of 16, from 974 to 1031: score 22.4, E = 1e-05
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
v+ G+ l++a +l+n + + g l+++a+g++ n++tl+ag
gi|3359384 974 VSQGTTLLQVA-----SLDNRARSETPGRLSVQARGAIRNQDTLAAG 1015
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
++l +aa+d++n++
gi|3359384 1016 QGL------------WLESAANDIENGA 1031
HutD: domain 1 of 1, from 1011 to 1039: score 4.9, E = 0.46
CS EE-TT-EE..EEESEEEE.EEEEE.EEEEEEEE
*->aLeagDtLmvwlegdalllpltgdrgrlllvsl<-*
+L+ag++L wle +a+ g+ g+ll+
gi|3359384 1011 TLAAGQGL--WLESAAND-IENGA-GALLWSGA 1039
Ery_res_leader1: domain 1 of 1, from 1034 to 1047: score 5.8, E = 2.6
*->LrisGaAllhLrLRTdR<-*
L+ sGa LrLR R
gi|3359384 1034 LLWSGAD---LRLRGTR 1047
Fil_haemagg: domain 13 of 16, from 1036 to 1110: score 4.0, E = 2.1
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EE ESSE...
*->vaaGaltlnaaalggldlnnggtlsagggltltaaglln.nggtlia
++ +l+l+ + + ++ ++++ +++g +l+a++ + + g + a
gi|3359384 1036 WSGADLRLRGT---RIINREAAIIESAAGMVLDARAEIDnGLGIIRA 1079
CS ............... .EEEEESS-EEEEE
ggdlllaagalrngg..dltltaaGdLdnsg<-*
ggdl ++a lrn+g+ ++++ aGd +g
gi|3359384 1080 GGDLWADAPLLRNSGrlGGRIVPAGDAAIGG 1110
CDC48_N: domain 1 of 1, from 1060 to 1078: score 4.4, E = 1.2
CS EEEEEEECCS.-HHCCCCC
*->klrvleAdkcpddgrsiar<-*
+ +vl A+ +d+g++i+r
gi|3359384 1060 AGMVLDARAEIDNGLGIIR 1078
Androgen_recep: domain 1 of 1, from 1104 to 1137: score 0.9, E = 1.6
CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
*->GggaaGPgsGsPsAaAsssWHtLFtAEEGqLYGP<-*
G +a G g+ +A+ WH LFtA + P
gi|3359384 1104 GDAAIGGGTYDHYHSAAVVWHELFTAGAAGIRVP 1137
Fil_haemagg: domain 14 of 16, from 1141 to 1181: score 6.2, E = 0.46
CS E-S-EEESSE...................EEEEESS-EEEEE
*->aagllnnggtliaggdlllaagalrnggdltltaaGdLdnsg<-*
++ + ++ + +agg+l l+ g + +++ ++++++G+++ +g
gi|3359384 1141 GKDVRVAQSVVQAGGNLHLNQGEQKGRQ-ARVSNQGRIEAAG 1181
RNR_N: domain 1 of 1, from 1222 to 1245: score 2.1, E = 5.7
*->ehVkPNtvkFhSlkErldYLvend<-*
+hV P + kFh+l E ld+L++n+
gi|3359384 1222 QHVIPAFWKFHTLYEFLDFLLSNN 1245
Nairovirus_M: domain 1 of 1, from 1286 to 1296: score -1.9, E = 5.5
*->PTVLDRQSRAS<-*
P VLD Q AS
gi|3359384 1286 PPVLDPQAKAS 1296
HMG_box: domain 1 of 1, from 1300 to 1316: score 5.0, E = 1.4
CS HHHHHHHHHHHHTTTSS
*->kAekeKarYekempeYk<-*
+A+++ a+Y+k+++eY
gi|3359384 1300 AAQALVAQYHKDLAEYA 1316
Strep_SA_rep: domain 1 of 2, from 1300 to 1323: score 5.7, E = 1.3
*->adYeakLaqYqadLArvqkanaane<-*
+ +a +aqY +dLA++ a++a++
gi|3359384 1300 -AAQALVAQYHKDLAEYATALEAAQ 1323
HSP70: domain 1 of 1, from 1301 to 1370: score 0.8, E = 3.4
CS HHHHHHHHHHHHCCC..CCCGCHHHHH...HHHHHHHHHHHHHC
*->aEslvystekslkeeklgdkvpeadkeklekkveeaiewLkeal...
a +lv + +k l+e+ + ++++a+ + +++++a + ++ al+ +
gi|3359384 1301 AQALVAQYHKDLAEY--ATALEAAQRA---EAIRTARQRVDGALrar 1342
CS TSSH...HHHHHHHHHHHHHCHHHHHHHHHH
egeddAekeeikakteeLqkvvqkigekmyq<-*
ge + +k++t e++++v ++++ + +
gi|3359384 1343 YGEK---LAQLKTRTPEVDAAVAALAQTIFD 1370
PseudoU_synth_1: domain 1 of 1, from 1304 to 1344: score 2.0, E = 3.4
CS EEES--...-......-HHHHCHHHHHCS-T...TEEEEEEEE.--T
*->fvgpgeltdrdnkndippedikkaLnaklrddladigvltapaegly
+v + ++ ++ +++ aL+a r+ +++ta++ ++
gi|3359384 1304 LVAQYHK---------DLAEYATALEAAQRA----EAIRTARQRVDG 1337
CS T--TTTT
lfharys<-*
+ary
gi|3359384 1338 ALRARYG 1344
MmgE_PrpD: domain 1 of 1, from 1306 to 1335: score 2.1, E = 2.3
CS HHHHHHHHHHHH-----HH....HHHHHHHHHH
*->dsvteqlAdyvasvryssippdvealetakkll<-*
++ ++lA+y++++++ + + ea++ta+ ++
gi|3359384 1306 AQYHKDLAEYATALEAAQR-A--EAIRTARQRV 1335
Transposase_20: domain 1 of 1, from 1329 to 1343: score 2.1, E = 7.1
*->lvalrhvedpgsrafy<-*
++a+++v d++ ra+y
gi|3359384 1329 RTARQRV-DGALRARY 1343
AD: domain 1 of 1, from 1338 to 1371: score 3.6, E = 3.1
*->rvkkrlrkaieeakkkaariGkGVSpEGQeiFda<-*
++++r+ ++++++k+ + ++V +++Q iFda
gi|3359384 1338 ALRARYGEKLAQLKTRTPEVDAAVAALAQTIFDA 1371
Strep_SA_rep: domain 2 of 2, from 1341 to 1365: score 0.9, E = 31
*->adYeakLaqYqadLArvqkanaane<-*
a Y +kLaq + +v +a aa
gi|3359384 1341 ARYGEKLAQLKTRTPEVDAAVAALA 1365
CbbQ_C: domain 1 of 2, from 1355 to 1369: score 0.2, E = 23
*->pdvreaLmeviaayF<-*
p+v +a ++++++F
gi|3359384 1355 PEVDAAVAALAQTIF 1369
Enolase_N: domain 1 of 1, from 1359 to 1380: score 3.2, E = 1.5
CS EEEEEEEEEE-TTS-EEEEEEE
*->aivkihaRqilDsRGnPtvEvd<-*
a v+ a i+D+R P Ev+
gi|3359384 1359 AAVAALAQTIFDARAKPAAEVE 1380
CM_1: domain 1 of 1, from 1426 to 1434: score 2.7, E = 2.2
CS GGGSSTTTT
*->AaaLRPDls<-*
Aa+L PD++
gi|3359384 1426 AAVLGPDWH 1434
Head_binding: domain 1 of 1, from 1587 to 1603: score -0.0, E = 9.9
*->dGaqqfYfanvLKYdPdkf<-*
+G+q Yf ++++Y Pd+
gi|3359384 1587 YGSQ--YFFDLIRYRPDRP 1603
DUF166: domain 1 of 1, from 1615 to 1627: score -0.2, E = 6.3
*->yihkeAvekAlgk<-*
++++e++ +A+g
gi|3359384 1615 RLIREQIARAMGG 1627
DUF547: domain 1 of 1, from 1665 to 1675: score 1.0, E = 9.6
*->eqLdeAareFi<-*
eqL +A+r+F+
gi|3359384 1665 EQLARATRDFV 1675
IATP: domain 1 of 1, from 1698 to 1712: score 3.7, E = 3.5
CS XXXXXXXXXXXXHHH
*->vggggGSiReAGGaF<-*
+++++++ ReAGGa+
gi|3359384 1698 TRTAASATREAGGAL 1712
FlgD: domain 1 of 1, from 1713 to 1753: score 1.5, E = 5.1
*->lvpddgntivyldgggggetGsvsggvevgLpsaAdevtvtikDaaG
+++ + t v d+gg + +e +aA ++ +i+DaaG
gi|3359384 1713 MAS--AGT-VLADTGG--------AAIE--SGNAAFLGKDVILDAAG 1746
qvvnvelVrtid<-*
Vr i+
gi|3359384 1747 GA-----VRLIN 1753
DGOK: domain 1 of 1, from 1772 to 1785: score -1.6, E = 7.9
*->GDeAvrAGLseiAr<-*
GD A++ GL +A
gi|3359384 1772 GDIAIQGGLLDAAQ 1785
CbbQ_C: domain 2 of 2, from 1773 to 1788: score 3.5, E = 2.6
*->DpdvreaLmeviaayF<-*
D++++ +L+++++ay+
gi|3359384 1773 DIAIQGGLLDAAQAYL 1788
RHS_repeat: domain 2 of 2, from 1801 to 1814: score 6.9, E = 0.41
*->YDanGrLtavtdps<-*
YDa+GrL++ d++
gi|3359384 1801 YDAHGRLVSRHDAR 1814
Pentapeptide: domain 1 of 1, from 1890 to 1904: score 6.4, E = 0.87
CS -B-TT-B-TT-B-TC
*->AnLsgAnLsganLsg<-*
A ++g+ L+ga+Lsg
gi|3359384 1890 ARFQGTTLEGAILSG 1904
CagZ: domain 1 of 1, from 1941 to 1954: score -1.1, E = 8.6
*->ERAKLitqLKLnLE<-*
ERAK + qL L L
gi|3359384 1941 ERAKRVDQLFLRLS 1954
DUF2604: domain 1 of 1, from 1949 to 1959: score 5.2, E = 0.39
*->LFLsLKAGvAG<-*
LFL L AG++G
gi|3359384 1949 LFLRLSAGAGG 1959
Fil_haemagg: domain 15 of 16, from 1967 to 2067: score 0.7, E = 18
CS EEESSEEEETT TT--EE-SEE
*->vaaGaltlnaa..........................alggldlnng
a G l+ +a+++++ + + + + +++ +++ +++ ++ + ++
gi|3359384 1967 SAQGGLQAHAGrgqtagahasagfestreyersrmthYRNADLNFGA 2013
CS EEEE-STT-EEEE-S-EE ESSE...................EEEEESS-
gtlsagggltltaaglln.nggtliaggdlllaagalrnggdltltaaGd
g+l+ g++ +l +a ++ ++ g+ ++++ + ++ lr + ++++a+
gi|3359384 2014 GLLAVGNTADLGGADINRdRYGQGASTASDAIPGDLLRIRA-ARVAATKY 2062
CS EEEEE
Ldnsg<-*
Ld++
gi|3359384 2063 LDVTD 2067
DNA_pol3_theta: domain 1 of 1, from 1994 to 2007: score 1.9, E = 7.4
*->ReYFReRLiyyRis<-*
ReY R R ++yR++
gi|3359384 1994 REYERSRMTHYRNA 2007
Glyco_hydro_70: domain 1 of 1, from 2033 to 2044: score -1.4, E = 8.5
*->RYGKGAmsAsDt<-*
RYG+GA +AsD+
gi|3359384 2033 RYGQGASTASDA 2044
DUF541: domain 1 of 1, from 2115 to 2137: score 1.7, E = 5
*->itVsGegevevaPDlAtislgVe<-*
+++ Ge+++ ++ D+A +s++ +
gi|3359384 2115 LQMAGEATQLATTDTAALSISAT 2137
Fil_haemagg: domain 16 of 16, from 2156 to 2198: score 0.5, E = 21
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE..
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtli<-
+G+l+++a+ ++ + +g + s + l+l+a++++n +++ +
gi|3359384 2156 YFGGNLDIRAT--EQDIDLAGTKFSGADWLALSARRDINVRAAAS 2198
CS
*
gi|3359384 - -
LEA_1: domain 1 of 1, from 2269 to 2293: score 8.5, E = 0.18
*->AKeAqA.eMdlheaKAehaaekesa<-*
A +AqA+ Mdlh a+ +a+ ++ +
gi|3359384 2269 ASMAQAtRMDLHVARDLNAISRQDE 2293
WWbp: domain 1 of 1, from 2299 to 2310: score 4.1, E = 0.42
*->pGGGwePslGea<-*
GG+we slG+a
gi|3359384 2299 TGGNWEVSLGAA 2310
ATP-grasp_2: domain 1 of 1, from 2368 to 2376: score -0.4, E = 8.3
CS EESS-SS-H
*->ASseGGvdI<-*
AS +GG+dI
gi|3359384 2368 ASNQGGMDI 2376
TraS: domain 1 of 1, from 2372 to 2391: score -0.0, E = 5.5
*->GGvDsAGntFGsrWqDydDR<-*
GG+D AG Dy D+
gi|3359384 2372 GGMDIAGRIHAEALHDYRDK 2391
GlcNAc_2-epim: domain 1 of 1, from 2446 to 2472: score 1.5, E = 1.6
*->Gf.FerLdad.GqpldadrrrivlqaR<-*
G+ +rL+ d+Gq++ +r++++++aR
gi|3359384 2446 GGvSGRLNTDsGQAVVVQRAERWASAR 2472
Sigma70_r2: domain 1 of 1, from 2549 to 2572: score 2.7, E = 7.4
CS HHHHHHHHHHHHHHHHCHHTSTTT
*->sfstwLytiarnaiiDalRrrrrr<-*
++ +++ +++ ++++D + ++++
gi|3359384 2549 KPDPYANRVIVQLAQDDVATQAAQ 2572
DUF1643: domain 1 of 1, from 2594 to 2599: score 0.2, E = 3
*->ePcHPL<-*
+P+HPL
gi|3359384 2594 HPVHPL 2599
FbpA: domain 1 of 1, from 2626 to 2644: score -0.3, E = 6.5
*->DGlflhAvveELqetLvgg<-*
DG ++ +v++L+e+L ++
gi|3359384 2626 DGHAVAGIVQQLRERLPPA 2644
DUF1109: domain 1 of 1, from 2673 to 2684: score 0.1, E = 6.3
*->LAadlepvrrrav<-*
LAad ++ +++av
gi|3359384 2673 LAAD-GAQPAPAV 2684
Flavi_M: domain 1 of 1, from 2756 to 2762: score 1.2, E = 8.8
*->LvAPAYa<-*
+vAP+Y+
gi|3359384 2756 AVAPSYS 2762
BtpA: domain 1 of 1, from 2804 to 2822: score -0.2, E = 10
*->inNevDieRvskivelake<-*
+ + ++ eR ++ +++ak
gi|3359384 2804 FSERISSERIRRVANAAKV 2822
Herpes_UL82_83: domain 1 of 1, from 2804 to 2826: score 0.5, E = 5.1
*->slgpisgtvllllfltqdvpleP<-*
++++is+ ++ ++++++vp+++
gi|3359384 2804 FSERISSERIRRVANAAKVPFDV 2826
AIRS: domain 1 of 2, from 3027 to 3036: score 0.0, E = 16
CS HT-EEEE--E
*->aGvplvGGdT<-*
+Gvpl+GG+
gi|3359384 3027 HGVPLLGGNA 3036
SPO11_like: domain 1 of 1, from 3191 to 3205: score 2.7, E = 3.9
*->GarEtPaGasRlAss<-*
Ga+E PaG Rl s
gi|3359384 3191 GAGEIPAGWLRLPSG 3205
FERM_C: domain 1 of 1, from 3300 to 3310: score 0.9, E = 9.5
CS HHHHHHCT-XX
*->qfylrrrqpdt<-*
qf+++rrq d
gi|3359384 3300 QFHAQRRQGDV 3310
DUF2600: domain 1 of 1, from 3363 to 3377: score 4.1, E = 0.45
*->PaVhreLakWrerAg<-*
P++ r+L+ Wrer+g
gi|3359384 3363 PVSARYLQQWRERSG 3377
UPF0164: domain 1 of 1, from 3405 to 3434: score 1.0, E = 3.3
*->vaFsssvategnasqlvrasaGaEiqilsvrld<-*
v ++s + te a l r +aG +++++ d
gi|3359384 3405 VQLGSDALTETAARRLFRKHAG---NASWYSQD 3434
DPBB_1: domain 1 of 1, from 3423 to 3440: score 4.1, E = 1.8
*->taaGsaslYGndghGrkt<-*
aG+as+Y++d G++t
gi|3359384 3423 KHAGNASWYSQDASGQLT 3440
Treacle: domain 1 of 1, from 3436 to 3451: score -0.2, E = 3.5
*->vGKTsQvRAAlAPAKE<-*
+G QvRA APA
gi|3359384 3436 SGQLTQVRAPAAPATG 3451
Acylphosphatase: domain 1 of 1, from 3472 to 3499: score 4.3, E = 2.3
CS E-H HHHHHHHHHHHH--STT-EEEEEE
*->Gde.aaleeFlewLkkggPPlarVdkve<-*
G+ a+l+++l ++++g P arV+k++
gi|3359384 3472 GNNaAQLARMLPAIRQGLPATARVEKIT 3499
DUF2398: domain 1 of 1, from 3513 to 3526: score -0.2, E = 5.2
*->lRaLLanPLitrtg<-*
lR LL+ +Lit +g
gi|3359384 3513 LRNLLNHYLITTAG 3526
Autoind_synth: domain 1 of 2, from 3534 to 3549: score 0.3, E = 9.3
CS EEEEEE-SHHHHHHHH
*->yLlhLPvDddsqqrLl<-*
y+++ +vD++ +++++
gi|3359384 3534 YAGRVDVDAAGHKQIV 3549
DUF1885: domain 1 of 1, from 3619 to 3624: score 1.3, E = 5.2
*->MyFykr<-*
MyFy+r
gi|3359384 3619 MYFYSR 3624
AHS2: domain 1 of 1, from 3723 to 3742: score 2.4, E = 1.4
*->LAQlrPGdkvRFvpvsleeA<-*
LAQ+ PG+ +R ++ + A
gi|3359384 3723 LAQAAPGSEIRLSEILQAVA 3742
HupH_C: domain 1 of 1, from 3730 to 3742: score 5.1, E = 0.24
*->SaeRLrEileale<-*
S+ RL+Eil+a++
gi|3359384 3730 SEIRLSEILQAVA 3742
HTH_DeoR: domain 1 of 1, from 3733 to 3745: score 2.1, E = 9.3
*->RieqIlelLkqqG<-*
R+ +Il+ ++q+G
gi|3359384 3733 RLSEILQAVAQSG 3745
LolB: domain 1 of 1, from 3779 to 3785: score 1.5, E = 5.8
*->kLvvdqW<-*
kLv++qW
gi|3359384 3779 KLVIQQW 3785
AIRS: domain 2 of 2, from 3875 to 3885: score 2.7, E = 2.3
CS HHT-EEEE--E
*->eaGvplvGGdT<-*
++ +pl+GG+T
gi|3359384 3875 RYSMPLLGGNT 3885
HNF-1A_C: domain 1 of 1, from 3890 to 3897: score 1.8, E = 4.4
*->TQMaSSsQ<-*
+QMaS+ Q
gi|3359384 3890 AQMASTIQ 3897
Autoind_synth: domain 2 of 2, from 3944 to 3959: score 0.1, E = 10
CS EEEEEE-SHHHHHHHH
*->yLlhLPvDddsqqrLl<-*
y+++ +vD++ ++r++
gi|3359384 3944 YAGRVDVDAAGRKRIV 3959
Type_III_YscP: domain 1 of 1, from 3961 to 3980: score 1.9, E = 4.1
*->tqGDllsPLHEPRYLagmeAastaqs<-*
qG+l EPR +ag+++a++ ++
gi|3359384 3961 -QGGLN----EPRAQAGASTAAP-NR 3980
DUF1205: domain 1 of 1, from 4026 to 4033: score 0.1, E = 8.4
*->geLPdNVR<-*
+eLP+N R
gi|3359384 4026 TELPANTR 4033
ADK: domain 1 of 1, from 4034 to 4042: score 1.4, E = 4.7
CS HHHHHHTTE
RF xxxxxxxxx
*->IdyYkkkGk<-*
IdyY++ G+
gi|3359384 4034 IDYYTEDGI 4042
Alpha-amyl_C: domain 1 of 1, from 4045 to 4051: score 4.0, E = 4
CS SEEEE--
*->kGfGvYk<-*
kGf+vY+
gi|3359384 4045 KGFAVYQ 4051
DUF917: domain 1 of 1, from 4070 to 4080: score -0.1, E = 8.8
*->LseeDleaiat<-*
+s+ Dlea+a+
gi|3359384 4070 ISPADLEALAR 4080
Ribosomal_L32e: domain 1 of 1, from 4071 to 4101: score 4.0, E = 0.79
CS SGGGTT--T.....TTEEE EE-TTS-HHH
*->NVkdLEaLdkCMqnketqa...arIAStVGaR<-*
+++dLEaL++ M+n+ +qa ++a AS+VG R
gi|3359384 4071 SPADLEALAR-MHNTSPQAltdAMLASAVGRR 4101
Carot_N: domain 1 of 1, from 4180 to 4190: score 0.6, E = 9.1
*->RdiVvdMGfDp<-*
R+++ +MG+ +
gi|3359384 4180 RNAAAEMGASA 4190
//