hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 3378576.fa
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Query sequence: gi|3378576|emb|CAA71690.1|
Accession: [none]
Description: TcdA protein [Clostridium difficile]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gly_transf_sug Glycosyltransferase sugar-binding reg 24.7 7.7e-07 1
NS3_envE Non-structural protein NS3/Small enve 10.7 0.015 1
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 1.5 0.35 1
MPP6 M-phase phosphoprotein 6 2.4 1.8 1
Caps_synth Capsular polysaccharide synthesis pro 2.1 3.1 1
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit 1.6 3.2 1
Antimicrobial16 Double glycine cleavage site bacterio 3.1 3.8 1
Glyco_transf_25 Glycosyltransferase family 25 (LPS bi 2.5 4.4 1
DUF2224 Uncharacterized conserved protein (DU 0.4 4.8 1
EF-1_beta_acid Eukaryotic elongation factor 1 beta c 3.1 5.3 1
Glyco_hydro_10 Glycosyl hydrolase family 10 0.1 5.5 1
MRP-S22 Mitochondrial 28S ribosomal protein S -0.4 7.4 1
DJ-1_PfpI DJ-1/PfpI family 1.1 7.5 1
P22_AR_C P22AR C-terminal domain 2.3 7.9 1
ATP-synt_E_2 ATP synthase epsilon subunit 2.1 7.9 1
Transposase_35 Putative transposase DNA-binding doma 2.6 8.1 1
DUF2429 Domain of unknown function (DUF2429) 0.2 8.9 1
SelB-wing_2 Elongation factor SelB, winged helix 2.8 9.3 1
Baculo_Y142 Baculovirus Y142 protein -1.5 9.3 1
Hexokinase_2 Hexokinase 0.4 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MRP-S22 1/1 7 17 .. 257 269 .] -0.4 7.4
DUF2224 1/1 27 37 .. 538 548 .] 0.4 4.8
ATP-synt_E_2 1/1 70 80 .. 46 56 .] 2.1 7.9
Antimicrobial16 1/1 76 89 .. 29 42 .] 3.1 3.8
RNA_pol_Rpc34 1/1 91 118 .. 312 345 .] 1.6 3.2
Transposase_35 1/1 117 128 .. 61 72 .] 2.6 8.1
mRNA_cap_enzyme 1/1 152 170 .. 129 147 .. 1.5 0.35
NS3_envE 1/1 176 203 .. 59 85 .] 10.7 0.015
Glyco_transf_25 1/1 182 204 .. 222 243 .] 2.5 4.4
Gly_transf_sug 1/1 242 289 .. 12 67 .. 24.7 7.7e-07
SelB-wing_2 1/1 255 272 .. 41 58 .] 2.8 9.3
Caps_synth 1/1 267 285 .. 124 142 .. 2.1 3.1
Baculo_Y142 1/1 322 337 .. 30 45 .. -1.5 9.3
MPP6 1/1 337 364 .. 43 71 .. 2.4 1.8
Hexokinase_2 1/1 398 449 .. 112 164 .. 0.4 9.6
Glyco_hydro_10 1/1 434 443 .. 38 47 .. 0.1 5.5
P22_AR_C 1/1 502 517 .. 1 18 [. 2.3 7.9
EF-1_beta_acid 1/1 621 648 .. 1 28 [] 3.1 5.3
DJ-1_PfpI 1/1 648 670 .. 1 37 [. 1.1 7.5
DUF2429 1/1 670 687 .. 127 144 .] 0.2 8.9
Alignments of top-scoring domains:
MRP-S22: domain 1 of 1, from 7 to 17: score -0.4, E = 7.4
*->eLirLtkiLhkiP<-*
eLi L ++++ P
gi|3378576 7 ELIKLAYSIR--P 17
DUF2224: domain 1 of 1, from 27 to 37: score 0.4, E = 4.8
*->tsLkefdklVd<-*
t+L+e++kl +
gi|3378576 27 TNLDEYNKLTT 37
ATP-synt_E_2: domain 1 of 1, from 70 to 80: score 2.1, E = 7.9
*->LdklKrkvLKE<-*
L lK+ +LKE
gi|3378576 70 LSNLKKDILKE 80
Antimicrobial16: domain 1 of 1, from 76 to 89: score 3.1, E = 3.8
*->elLyeliliKfkit<-*
++L e+iliK +t
gi|3378576 76 DILKEVILIKNSNT 89
RNA_pol_Rpc34: domain 1 of 1, from 91 to 118: score 1.6, E = 3.2
*->PVvddCeegiFNYFKmFPgevspitCeYmdeWLe<-*
PV+++ ++ gevs+i eY + W +
gi|3378576 91 PVEKNLHFV------WIGGEVSDIVLEYIKQWAD 118
Transposase_35: domain 1 of 1, from 117 to 128: score 2.6, E = 8.1
*->RDvNAAiNIlkr<-*
+D+NA +NI+++
gi|3378576 117 ADINAEYNIRLW 128
mRNA_cap_enzyme: domain 1 of 1, from 152 to 170: score 1.5, E = 0.35
CS HHHHHHHTCCHHHHCCHH-
*->leilkkeiikPrneekkfk<-*
l+ l++ei++P+++++kf+
gi|3378576 152 LQLLEEEIQNPQFDNMKFY 170
NS3_envE: domain 1 of 1, from 176 to 203: score 10.7, E = 0.015
*->YlynRskqlYkyYneev.kPPvLevDDv<-*
++y R k + +yY +++kP vL +DD
gi|3378576 176 FIYDRQKRFINYYKSQInKPTVLTIDDI 203
Glyco_transf_25: domain 1 of 1, from 182 to 204: score 2.5, E = 4.4
*->kklLkyl.knwpsdellpvDdlm<-*
k++++y++ +++++ l +Dd++
gi|3378576 182 KRFINYYkSQINKPTVLTIDDII 204
Gly_transf_sug: domain 1 of 1, from 242 to 289: score 24.7, E = 7.7e-07
*->slfkdtpaypwfqeafssardPGrwpKyynaaasDllRlaiLykYGG
slf ++ + +++++ ++ + ++aaasD +Rl+ L+ +GG
gi|3378576 242 SLFTEQELLNIYNQELL------NRG--NLAAASDIVRLLALKNFGG 280
iYlDtDvil<-*
+YlD D+ +
gi|3378576 281 VYLDVDMLP 289
SelB-wing_2: domain 1 of 1, from 255 to 272: score 2.8, E = 9.3
*->eallaeGrLklegdwvhL<-*
++ll G L++ d+v+L
gi|3378576 255 QELLNRGNLAAASDIVRL 272
Caps_synth: domain 1 of 1, from 267 to 285: score 2.1, E = 3.1
*->SDlLRveLLnrYGGiWiDa<-*
SD++R+ L+++GG+ +D+
gi|3378576 267 SDIVRLLALKNFGGVYLDV 285
Baculo_Y142: domain 1 of 1, from 322 to 337: score -1.5, E = 9.3
*->kpFIreYlknNfnald<-*
k +I++Y+++Nf+ ld
gi|3378576 322 KKYINNYTSENFDKLD 337
MPP6: domain 1 of 1, from 337 to 364: score 2.4, E = 1.8
*->dkmLketekfiieEpSyviCyDYAKLEdL<-*
d+ Lk k+ii E++ + C + KLE+L
gi|3378576 337 DQQLKDNFKLII-ESKSEKCEIFSKLENL 364
Hexokinase_2: domain 1 of 1, from 398 to 449: score 0.4, E = 9.6
CS TTCCCTTTSSTHHHHH HHHT-STTSCHHHHHHHHHHTT---HHHHH
*->spkLktpgsfeTsvlS.rIEsDpsenledvraiLqtaLgletTdeer
++++k++++f +l ++IEsD n+ d+ +i+ ++L+ + T+e +
gi|3378576 398 IEQIKNRYQFLNQHLNpAIESD--NNFTDTTKIFHDSLFNSATAENS 442
CS HHHHHHH
klvrrvC<-*
++ +++
gi|3378576 443 MFLTKIA 449
Glyco_hydro_10: domain 1 of 1, from 434 to 443: score 0.1, E = 5.5
CS -SEEEESSTT
*->FNsiTpENeM<-*
FNs T+EN+M
gi|3378576 434 FNSATAENSM 443
P22_AR_C: domain 1 of 1, from 502 to 517: score 2.3, E = 7.9
*->ekkCPytqeFTEeELqsL<-*
++ ++TE+E++sL
gi|3378576 502 PEN--NLSQLTEQEINSL 517
EF-1_beta_acid: domain 1 of 1, from 621 to 648: score 3.1, E = 5.3
*->LFGSddeeedeeaekire.eRlaeyaakk<-*
F Sdd e e +k r +eRl++ ++ k
gi|3378576 621 -FLSDDGESILELNKYRIpERLKNKEKVK 648
DJ-1_PfpI: domain 1 of 1, from 648 to 670: score 1.1, E = 7.5
CS EEEEEESSTTC-..-EEE-TTS......TSCHEEECS
*->evtvvspnkgkgdcvevkgkrgggaqyekggvkvtad<-*
+vt+++++k+ e++++ ++ +++ +d
gi|3378576 648 KVTFIGHGKD-----EFNTS--------EF-ARLSVD 670
DUF2429: domain 1 of 1, from 670 to 687: score 0.2, E = 8.9
*->DAmqtEmssrfdvvknei<-*
D + +E+ss +d++k +i
gi|3378576 670 DSLSNEISSFLDTIKLDI 687
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