hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 34783139.fa
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Query sequence: gi|34783139|gb|AAH16862.2|
Accession: [none]
Description: NELF protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 7.8 0.4 1
NUP Purine nucleoside permease (NUP) 1.5 2 1
TP1 Nuclear transition protein 1 3.4 2 1
Orthopox_B11R Orthopoxvirus B11R protein 3.4 2.9 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.4 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TP1 1/1 3 23 .. 38 54 .] 3.4 2
IQ 1/1 9 23 .. 1 15 [. 7.8 0.4
AMP_N 1/1 31 42 .. 1 12 [. 1.9 4.4
NUP 1/1 101 109 .. 1 9 [. 1.5 2
Orthopox_B11R 1/1 135 150 .. 1 16 [. 3.4 2.9
c-SKI_SMAD_bind 1/1 137 153 .. 82 98 .] 1.4 6.8
IFRD 1/1 138 149 .. 354 365 .] -0.2 6.5
TIR 1/1 189 204 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 258 271 .. 100 113 .] 0.7 6.4
IMPDH 1/1 279 287 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
TP1: domain 1 of 1, from 3 to 23: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|3478313 3 KRRKRENDSAsviqRNFRKHL 23
IQ: domain 1 of 1, from 9 to 23: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|3478313 9 NDSASVIQRNFRKHL 23
AMP_N: domain 1 of 1, from 31 to 42: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|3478313 31 VKAQTFAERRER 42
NUP: domain 1 of 1, from 101 to 109: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|3478313 101 VPPKVMLIS 109
Orthopox_B11R: domain 1 of 1, from 135 to 150: score 3.4, E = 2.9
*->DtdvanvEDimnEiDR<-*
D + a EDi+ Ei+R
gi|3478313 135 DHEHATFEDILEEIER 150
c-SKI_SMAD_bind: domain 1 of 1, from 137 to 153: score 1.4, E = 6.8
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|3478313 137 EHATFEDILEEIERKLN 153
IFRD: domain 1 of 1, from 138 to 149: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|3478313 138 HATFEDILEEIE 149
TIR: domain 1 of 1, from 189 to 204: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|3478313 189 EKEE----DMIHFWKRLSRL 204
Orthopox_N1: domain 1 of 1, from 258 to 271: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|3478313 258 QMIETYFDFRLYRL 271
IMPDH: domain 1 of 1, from 279 to 287: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|3478313 279 KLLDFDDVL 287
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