hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 46201911.fa
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Query sequence: gi|46201911|ref|ZP_00054112.2|
Accession: [none]
Description: COG5295: Autotransporter adhesin [Magnetospirillum magnetotacticum MS-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKD PKD domain 19.8 1.5e-05 8
Flagellin_IN Flagellin hook IN motif 22.1 2.3e-05 7
Adeno_shaft Adenoviral fibre protein (repeat/shaf 11.5 0.053 3
Big_2 Bacterial Ig-like domain (group 2) 8.0 0.12 5
KH_1 KH domain 7.0 0.23 3
Chlorovi_GP_rpt Chlorovirus glycoprotein repeat 7.3 0.24 2
Fil_haemagg Haemagluttinin repeat 6.7 0.34 2
SAFF SAFF domain 6.5 0.35 1
SLAP Bacterial surface layer protein 2.7 0.41 1
He_PIG Putative Ig domain 6.5 0.48 3
Sugar_tr Sugar (and other) transporter 4.1 0.49 1
Cadherin Cadherin domain 6.1 0.49 2
Glycophorin_A Glycophorin A 4.9 0.49 1
Rrn6 RNA polymerase I-specific transcripti 3.5 0.5 1
TIG IPT/TIG domain 7.1 0.55 2
RTX_C RTX C-terminal domain 5.1 0.57 2
Cna_B Cna protein B-type domain 4.6 0.71 1
CBM_20 Starch binding domain 5.3 0.79 3
SGL SMP-30/Gluconolaconase/LRE-like regio 3.3 1.1 1
VBS Vinculin Binding Site 3.9 1.2 1
TPD52 Tumour protein D52 family 3.4 1.2 1
Flagellin_D3 Flagellin D3 domain 5.2 1.3 1
Tymo_coat Tymovirus coat protein 3.9 1.4 1
DUF1271 Protein of unknown function (DUF1271) 4.4 1.4 1
Big_1 Bacterial Ig-like domain (group 1) 3.1 1.5 3
ALF Short repeats of unknown function 5.2 1.5 1
DUF1155 Protein of unknown function (DUF1155) 3.8 1.7 1
MORN MORN repeat 6.2 1.9 2
DUF11 Domain of unknown function DUF11 4.9 1.9 2
Trypan_PARP Procyclic acidic repetitive protein ( 3.2 2.2 1
A2M_N_2 Alpha-2-macroglobulin family N-termin 3.5 2.2 1
RTX RTX N-terminal domain -0.3 2.3 1
MucBP MucBP domain 4.1 2.3 2
Plasmid_RAQPRD Plasmid protein of unknown function ( 2.6 2.4 1
RAP-1 Rhoptry-associated protein 1 (RAP-1) 2.3 2.4 1
DUF1321 Protein of unknown function (DUF1321) 1.7 2.5 1
Reovirus_cap Reovirus outer capsid protein, Sigma 1.1 2.7 1
Polyoma_coat2 Polyomavirus coat protein 1.5 2.7 1
BNR BNR/Asp-box repeat 5.4 2.7 2
DUF756 Domain of unknown function (DUF756) 4.2 2.8 2
DUF935 Protein of unknown function (DUF935) 0.8 3 1
PCMT Protein-L-isoaspartate(D-aspartate) O 2.0 3 1
DUF1510 Protein of unknown function (DUF1510) 1.0 3.1 1
DUF461 Protein of unknown function (DUF461) 3.0 3.1 1
DUF2184 Uncharacterized protein conserved in 2.3 3.1 1
EF_TS Elongation factor TS 1.1 3.3 1
P_gingi_FimA Porphyromonas gingivalis major fimbri -0.6 3.3 1
Tim17 Tim17/Tim22/Tim23 family 2.7 3.4 1
F420_ligase F420-0:Gamma-glutamyl ligase 2.2 3.4 1
SFT2 SFT2-like protein 2.4 3.5 1
Flavi_M Flavivirus envelope glycoprotein M 2.5 3.6 1
HI0933_like HI0933-like protein 1.0 3.8 1
DUF1977 Domain of unknown function (DUF1977) 1.5 4 1
Glug The GLUG motif 3.2 4.1 1
Nsp1_C Nsp1-like C-terminal region 2.7 4.1 1
DUF1522 Domain of Unknown Function (DUF1522) 2.2 4.1 1
FGGY_N FGGY family of carbohydrate kinases, 1.4 4.2 1
RFX1_trans_act RFX1 transcription activation region 1.6 4.2 1
ETX_MTX2 Clostridium epsilon toxin ETX/Bacillu 1.4 4.3 1
DUF1480 Protein of unknown function (DUF1480) 1.2 4.4 1
Denso_VP4 Capsid protein VP4 0.1 4.6 1
Corona_M Coronavirus M matrix/glycoprotein 0.8 4.7 1
Reovirus_M2 Reovirus major virion structural prot -1.4 4.9 1
PfkB pfkB family carbohydrate kinase 1.0 4.9 1
Proteasome Proteasome A-type and B-type 1.5 5 1
DUF2136 Uncharacterized protein conserved in 2.6 5.1 1
APC_basic APC basic domain 0.1 5.1 1
PDT Prephenate dehydratase 1.4 5.2 1
LVIVD LVIVD repeat 3.0 5.4 2
Alginate_lyase2 Alginate lyase 0.8 5.4 1
Aerolysin Aerolysin toxin 0.5 5.5 1
DUF2179 Uncharacterized protein conserved in 3.0 5.6 1
FG-GAP FG-GAP repeat 3.3 5.6 1
UPF0183 Uncharacterised protein family (UPF01 -1.0 5.6 1
Herpes_U59 Herpesvirus U59 protein 0.1 5.7 1
DUF2499 Protein of unknown function (DUF2499) 1.6 6 1
YscJ_FliF Secretory protein of YscJ/FliF family 0.4 6.1 1
BcsB Bacterial cellulose synthase subunit -0.1 6.4 1
Spiralin Spiralin -0.5 6.5 1
PMI_typeI Phosphomannose isomerase type I -0.2 6.7 1
Herpes_ORF11 Herpesvirus dUTPase protein -0.2 6.9 1
PPC Bacterial pre-peptidase C-terminal do 2.1 7 1
A2M_N Alpha-2-macroglobulin family N-termin 0.2 7 1
DUF1547 Domain of Unknown Function (DUF1547) 1.9 7 1
UnbV_ASPIC ASPIC and UnbV 1.8 7.4 1
GspM_II General secretion pathway protein M 1.6 7.4 1
Curlin_rpt Curlin associated repeat 2.3 7.5 1
GFA Glutathione-dependent formaldehyde-ac 1.9 7.5 1
DDR Diol dehydratase / glycerol dehydrata -1.6 7.9 1
ETF_alpha Electron transfer flavoprotein FAD-bi 1.7 8 1
Hep_Hag Hep_Hag 3.6 8 2
DUF745 Protein of unknown function (DUF745) 0.4 8.2 1
UcrQ UcrQ family 2.0 8.6 1
DUF2497 Protein of unknown function (DUF2497) 2.0 8.9 1
CheR_N CheR methyltransferase, all-alpha dom 2.0 9.1 1
AIRS AIR synthase related protein, N-termi 0.8 9.1 1
Cellulose_synt Cellulose synthase -2.3 9.2 1
BetaGal_dom2 Beta-galactosidase, domain 2 0.6 9.4 1
Glyco_hydro_28 Glycosyl hydrolases family 28 -0.4 9.8 1
OmpH Outer membrane protein (OmpH-like) 0.5 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1321 1/1 4 51 .. 113 161 .] 1.7 2.5
DUF1480 1/1 101 120 .. 1 24 [. 1.2 4.4
CheR_N 1/1 148 164 .. 1 17 [. 2.0 9.1
Sugar_tr 1/1 241 261 .. 1 22 [. 4.1 0.49
DUF2136 1/1 249 258 .. 69 78 .] 2.6 5.1
ETF_alpha 1/1 317 333 .. 24 40 .. 1.7 8
HI0933_like 1/1 391 401 .. 404 414 .] 1.0 3.8
PPC 1/1 495 571 .. 13 85 .] 2.1 7
BNR 1/2 505 516 .. 1 12 [] 0.5 81
Cna_B 1/1 510 538 .. 2 27 .. 4.6 0.71
UPF0183 1/1 512 521 .. 404 413 .] -1.0 5.6
Alginate_lyase2 1/1 514 538 .. 83 110 .. 0.8 5.4
APC_basic 1/1 518 529 .. 377 388 .] 0.1 5.1
Fil_haemagg 1/2 560 604 .. 1 45 [. 4.5 1.4
Adeno_shaft 1/3 562 592 .. 1 30 [] 2.1 21
DUF1271 1/1 562 570 .. 61 69 .] 4.4 1.4
Big_2 1/5 563 658 .. 1 90 [] 4.4 1.3
Nsp1_C 1/1 582 606 .. 1 25 [. 2.7 4.1
Cadherin 1/2 586 626 .. 13 60 .. 4.2 1.7
UcrQ 1/1 612 631 .. 1 20 [. 2.0 8.6
MucBP 1/2 664 684 .. 87 108 .] 0.9 16
Big_1 1/3 703 723 .. 85 106 .] 2.7 1.9
Fil_haemagg 2/2 764 844 .. 1 75 [] 2.2 6.9
Flagellin_IN 1/7 794 816 .. 1 31 [. 6.9 0.43
FGGY_N 1/1 802 818 .. 246 262 .] 1.4 4.2
Rrn6 1/1 826 848 .. 1 23 [. 3.5 0.5
DUF935 1/1 833 896 .. 429 470 .. 0.8 3
Chlorovi_GP_rpt 1/2 862 881 .. 1 22 [. 4.7 1.6
CBM_20 1/3 930 944 .. 90 104 .] 0.3 19
DUF2497 1/1 1041 1086 .. 1 46 [. 2.0 8.9
Reovirus_cap 1/1 1070 1088 .. 363 383 .] 1.1 2.7
PKD 1/8 1078 1098 .. 71 92 .] 5.1 0.51
RTX 1/1 1115 1123 .. 659 667 .] -0.3 2.3
DDR 1/1 1162 1178 .. 1 18 [. -1.6 7.9
CBM_20 2/3 1216 1230 .. 90 104 .] 2.8 3.8
Adeno_shaft 2/3 1285 1303 .. 1 18 [. 3.5 8.8
DUF2184 1/1 1301 1318 .. 1 20 [. 2.3 3.1
CBM_20 3/3 1325 1341 .. 88 104 .] 2.1 6
Denso_VP4 1/1 1328 1346 .. 424 442 .] 0.1 4.6
DUF11 1/2 1373 1411 .. 1 39 [. 0.6 28
YscJ_FliF 1/1 1382 1397 .. 196 218 .] 0.4 6.1
DUF1155 1/1 1408 1427 .. 1 21 [. 3.8 1.7
Polyoma_coat2 1/1 1408 1431 .. 132 156 .. 1.5 2.7
Trypan_PARP 1/1 1412 1435 .. 125 145 .] 3.2 2.2
OmpH 1/1 1419 1444 .. 1 23 [. 0.5 10
SGL 1/1 1474 1487 .. 267 280 .] 3.3 1.1
TIG 1/2 1480 1494 .. 84 103 .] 0.0 40
FG-GAP 1/1 1530 1547 .. 13 36 .] 3.3 5.6
PDT 1/1 1535 1543 .. 1 9 [. 1.4 5.2
DUF1510 1/1 1655 1673 .. 129 147 .. 1.0 3.1
BetaGal_dom2 1/1 1692 1704 .. 177 189 .] 0.6 9.4
MORN 1/2 1791 1802 .. 12 23 .] 1.1 47
RAP-1 1/1 1794 1822 .. 1 29 [. 2.3 2.4
Herpes_U59 1/1 1816 1829 .. 443 456 .] 0.1 5.7
ALF 1/1 1820 1832 .. 1 14 [. 5.2 1.5
DUF1547 1/1 1850 1869 .. 44 63 .] 1.9 7
Flavi_M 1/1 1855 1860 .. 70 75 .] 2.5 3.6
Hep_Hag 1/2 1914 1927 .. 1 14 [. 0.2 68
Big_2 2/5 1988 2015 .. 1 30 [. 2.6 4.4
Proteasome 1/1 1995 2003 .. 1 9 [. 1.5 5
DUF756 1/2 2003 2018 .. 31 48 .. 3.9 3.3
Big_1 2/3 2006 2016 .. 28 38 .. 0.1 13
He_PIG 1/3 2006 2016 .. 51 61 .] 2.7 5.4
PKD 2/8 2006 2026 .. 71 92 .] 6.3 0.21
Herpes_ORF11 1/1 2031 2062 .. 397 428 .] -0.2 6.9
Glyco_hydro_28 1/1 2059 2092 .. 325 362 .] -0.4 9.8
DUF1522 1/1 2061 2073 .. 106 118 .] 2.2 4.1
RTX_C 1/2 2134 2159 .. 168 194 .] 2.0 4.3
Glug 1/1 2140 2154 .. 22 38 .] 3.2 4.1
Flagellin_D3 1/1 2144 2172 .. 63 100 .] 5.2 1.3
Chlorovi_GP_rpt 2/2 2146 2153 .. 27 35 .] 2.6 7.1
A2M_N 1/1 2201 2255 .. 1 61 [. 0.2 7
Plasmid_RAQPRD 1/1 2205 2220 .. 1 16 [. 2.6 2.4
LVIVD 1/2 2252 2265 .. 1 14 [. 2.2 8.9
Spiralin 1/1 2259 2275 .. 223 239 .] -0.5 6.5
Big_2 3/5 2273 2301 .. 1 30 [. 0.6 17
Flagellin_IN 2/7 2276 2299 .. 1 26 [. 1.6 13
SAFF 1/1 2285 2313 .. 1 30 [. 6.5 0.35
PKD 3/8 2292 2313 .. 71 92 .] 1.3 7.3
Reovirus_M2 1/1 2302 2315 .. 1 14 [. -1.4 4.9
TIG 2/2 2317 2353 .. 1 45 [. 7.1 0.55
MORN 2/2 2355 2367 .. 11 23 .] 5.0 3.9
Curlin_rpt 1/1 2417 2438 .. 13 35 .] 2.3 7.5
Flagellin_IN 3/7 2422 2438 .. 44 63 .] 3.0 5.5
Big_2 4/5 2428 2443 .. 1 17 [. 0.1 24
Hep_Hag 2/2 2482 2495 .. 1 14 [. 3.4 9.1
Big_2 5/5 2556 2583 .. 1 30 [. 0.1 23
He_PIG 2/3 2565 2584 .. 42 61 .] 2.0 8.6
DUF756 2/2 2570 2586 .. 30 48 .. 0.3 30
P_gingi_FimA 1/1 2635 2641 .. 367 373 .] -0.6 3.3
Glycophorin_A 1/1 2656 2686 .. 1 34 [. 4.9 0.49
Flagellin_IN 4/7 2684 2707 .. 1 24 [. 1.4 15
He_PIG 3/3 2684 2694 .. 51 61 .] 1.7 11
PKD 4/8 2686 2705 .. 73 92 .] 1.9 4.9
BNR 2/2 2761 2771 .. 2 12 .] 4.9 3.8
LVIVD 2/2 2765 2775 .. 1 11 [. 0.8 23
DUF1977 1/1 2786 2806 .. 1 28 [. 1.5 4
Corona_M 1/1 2800 2813 .. 217 230 .] 0.8 4.7
SLAP 1/1 2816 2842 .. 1 29 [. 2.7 0.41
DUF2499 1/1 2820 2833 .. 77 90 .] 1.6 6
A2M_N_2 1/1 2822 2848 .. 1 28 [. 3.5 2.2
PKD 5/8 2893 2913 .. 68 89 .. 0.2 16
EF_TS 1/1 2939 2956 .. 1 19 [. 1.1 3.3
AIRS 1/1 2966 2979 .. 111 124 .] 0.8 9.1
PKD 6/8 2981 3032 .. 1 62 [. 1.9 4.6
DUF2179 1/1 3041 3051 .. 1 11 [. 3.0 5.6
MucBP 2/2 3046 3059 .. 95 108 .] 3.2 4.1
Tim17 1/1 3063 3103 .. 101 141 .] 2.7 3.4
VBS 1/1 3097 3103 .. 1 7 [. 3.9 1.2
Cellulose_synt 1/1 3140 3165 .. 873 898 .] -2.3 9.2
DUF745 1/1 3180 3191 .. 178 189 .] 0.4 8.2
SFT2 1/1 3229 3243 .. 110 124 .] 2.4 3.5
RFX1_trans_act 1/1 3283 3295 .. 156 168 .] 1.6 4.2
Aerolysin 1/1 3291 3310 .. 195 215 .. 0.5 5.5
DUF11 2/2 3322 3350 .. 48 80 .] 4.3 2.8
Big_1 3/3 3346 3375 .. 1 31 [. 0.2 12
PMI_typeI 1/1 3479 3499 .. 424 447 .. -0.2 6.7
BcsB 1/1 3487 3510 .. 1 24 [. -0.1 6.4
KH_1 1/3 3487 3509 .. 68 93 .] 4.2 1.5
GspM_II 1/1 3490 3509 .. 65 84 .. 1.6 7.4
Tymo_coat 1/1 3490 3500 .. 166 176 .] 3.9 1.4
Cadherin 2/2 3522 3543 .. 76 107 .] 1.9 7.9
F420_ligase 1/1 3534 3555 .. 241 263 .] 2.2 3.4
PKD 7/8 3569 3586 .. 74 92 .] 2.6 2.9
DUF461 1/1 3577 3594 .. 93 113 .] 3.0 3.1
UnbV_ASPIC 1/1 3577 3598 .. 4 26 .. 1.8 7.4
Flagellin_IN 5/7 3580 3597 .. 44 63 .] 3.7 3.5
Adeno_shaft 3/3 3588 3604 .. 1 17 [. 5.9 1.9
KH_1 2/3 3603 3625 .. 68 93 .] 2.1 6.1
GFA 1/1 3647 3691 .. 55 99 .] 1.9 7.5
TPD52 1/1 3650 3660 .. 184 194 .] 3.4 1.2
PCMT 1/1 3655 3670 .. 215 230 .] 2.0 3
RTX_C 2/2 3716 3754 .. 156 194 .] 3.1 2.1
ETX_MTX2 1/1 3729 3777 .. 200 248 .. 1.4 4.3
PKD 8/8 3819 3834 .. 76 92 .] 0.5 12
Flagellin_IN 6/7 3828 3845 .. 44 63 .] 4.3 2.4
KH_1 3/3 3851 3873 .. 68 93 .] 0.7 16
Flagellin_IN 7/7 3908 3932 .. 1 31 [. 1.1 19
PfkB 1/1 3934 3954 .. 306 326 .] 1.0 4.9
Alignments of top-scoring domains:
DUF1321: domain 1 of 1, from 4 to 51: score 1.7, E = 2.5
*->qaeeddeeeeeeipekiedededepdeaapapaplaaak......ga
++ d++ +++ d+ + ++apap+ ++aa++ ++++
gi|4620191 4 PPLVDAAHAAP-------DASSKALIPEAPAPVQVRAADpaqdggRK 43
eVVsLDaF<-*
eVV++D+
gi|4620191 44 EVVFVDTA 51
DUF1480: domain 1 of 1, from 101 to 120: score 1.2, E = 4.4
*->MtKTsVrIGaFevDDaeLHGESsG<-*
t ++IG + Da L S G
gi|4620191 101 -TDAAIQIGTHTLTDANL---SDG 120
CheR_N: domain 1 of 1, from 148 to 164: score 2.0, E = 9.1
*->sendlerfiellyertG<-*
s+ +++f+++l ++tG
gi|4620191 148 SDTQGQQFARDLAAATG 164
Sugar_tr: domain 1 of 1, from 241 to 261: score 4.1, E = 0.49
*->valvaalgGsflfGYDtgviga<-*
+a +aa++G + GYD+ +i +
gi|4620191 241 LAQMAAWAG-THSGYDSITILS 261
DUF2136: domain 1 of 1, from 249 to 258: score 2.6, E = 5.1
*->GTHaEYDkid<-*
GTH+ YD i+
gi|4620191 249 GTHSGYDSIT 258
ETF_alpha: domain 1 of 1, from 317 to 333: score 1.7, E = 8
CS HHHHHHHHHHT-EEEE-
*->klleeLAdvLGAeVGaS<-*
k + +LA+v G++VGaS
gi|4620191 317 KFVDDLASVTGGVVGAS 333
HI0933_like: domain 1 of 1, from 391 to 401: score 1.0, E = 3.8
*->AWaSGyaAGqg<-*
A++SGy+ G+
gi|4620191 391 AFVSGYVVGSL 401
PPC: domain 1 of 1, from 495 to 571: score 2.1, E = 7
CS CEEEEEEECTSSS...S...CCEEEEEEECCCS ESSSSTTCE-
*->gtlsisldggsslrslsgnGdadtlLywlldgd....pslsaydays
+ +++++g+ss+ da + ++ l+dg ++ ++++++++++
gi|4620191 495 TATNLTISGSSSST------DAGATIT-LYDGAssigTTTADSSGNW 534
CS .....ECCTTEEEEE ECC .-SEEEEEEEEE
tTrdvdnggsdelis..fta..........peaGtYyirVyg<-*
++ g+ +++++++ta+ ++++ ++++++G i+V++
gi|4620191 535 -----TYTGNFSTGThsITAkasetgyndsTASGALSITVDP 571
BNR: domain 1 of 2, from 505 to 516: score 0.5, E = 81
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
StD G+T ++
gi|4620191 505 SSSTDAGATITL 516
Cna_B: domain 1 of 1, from 510 to 538: score 4.6, E = 0.71
CS TT-EEEEEETTEEE E--TTSEEEEEE
*->eGAeftLldkdgnv...tTdenGkytftn<-*
+GA++tL+d + +++++t d++G+ t t+
gi|4620191 510 AGATITLYDGASSIgttTADSSGNWTYTG 538
UPF0183: domain 1 of 1, from 512 to 521: score -1.0, E = 5.6
*->aSVTLYdgAp<-*
a +TLYdgA
gi|4620191 512 ATITLYDGAS 521
Alginate_lyase2: domain 1 of 1, from 514 to 538: score 0.8, E = 5.4
CS EECTTTT..... ECGGB.......-SSS
*->Emlrdgntsiat....skanWlasplseqlsg<-*
++l+dg++si t++ +s++nW ++g
gi|4620191 514 ITLYDGASSIGTttadSSGNW-------TYTG 538
APC_basic: domain 1 of 1, from 518 to 529: score 0.1, E = 5.1
*->dsavsvlsasae<-*
d+a+s+ ++ a+
gi|4620191 518 DGASSIGTTTAD 529
Fil_haemagg: domain 1 of 2, from 560 to 604: score 4.5, E = 1.4
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE..
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtli<-
+a+Gal+++++ + + +++ + t++a+ +lta++++++ +++
gi|4620191 560 TASGALSITVDPGPAFSNASSVTVNATHPFALTAQATDAASSSIT 604
CS
*
gi|4620191 - -
Adeno_shaft: domain 1 of 3, from 562 to 592: score 2.1, E = 21
CS S--EEE-B-TTEEE-T S-EEE-B-TTEEEE
*->nnsLtlntgpGLtvtn.naLalklGagLtvd<-*
+++L++ + pG ++n ++++++ + ++ ++
gi|4620191 562 SGALSITVDPGPAFSNaSSVTVNATHPFALT 592
DUF1271: domain 1 of 1, from 562 to 570: score 4.4, E = 1.4
*->SGALsYvrk<-*
SGALs++++
gi|4620191 562 SGALSITVD 570
Big_2: domain 1 of 5, from 563 to 658: score 4.4, E = 1.3
CS EEEEEEETTT. TEEES--SEEETTSEEEEEEESTT....SBEEE
*->avtsvtvsptg...ntaslakGatlqlkatvtpsdasnkdiTkkvtW
s+tv+p +n+ s++++at+ + t + +da ++ t+
gi|4620191 563 GALSITVDPGPafsNASSVTVNATHPFALTAQATDAAS----SSITY 605
CS EE S-TTTEEEE....TTTEEE EE-SSS-EEEEEEETT .TEE
sS.snpsvAtVsntnSgstGlV.......talakGtatItatsgd.gnks
+++s p ++ ++++ stG+++ + ++ + ++ + I+ats ++++++
gi|4620191 606 AIqSQPGHGSANINP--STGVIsyslspaSYVGYDSFVIKATSSNnVVTT 653
CS EEEEE
asvtv<-*
+ tv
gi|4620191 654 QTITV 658
Nsp1_C: domain 1 of 1, from 582 to 606: score 2.7, E = 4.1
*->dvsvkdpatssttpsepkpssmsyk<-*
+v ++ p +++ ++ +++ss++y+
gi|4620191 582 TVNATHPFALTAQATDAASSSITYA 606
Cadherin: domain 1 of 2, from 586 to 626: score 4.2, E = 1.7
CS ---EEEEE---S..-TTTT----------SS----B-TTSSEEE..E
*->tevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdnegii
t++ +tA+ D ++ ++i+Y+i +++ g I+p tG+ i
gi|4620191 586 THPFALTAQATD---AASSSITYAIQSQPGHGSANINPSTGV----I 625
CS -
s<-*
s
gi|4620191 626 S 626
UcrQ: domain 1 of 1, from 612 to 631: score 2.0, E = 8.6
CS BTTCSS---EECEEEEEETC
*->GwgfgglpKqkGIitYsLSP<-*
G g+ + G+i+YsLSP
gi|4620191 612 GHGSANINPSTGVISYSLSP 631
MucBP: domain 1 of 2, from 664 to 684: score 0.9, E = 16
*->ptlkdtlpvnvtYtfngtiqtV<-*
ptl++ +n+ Y +++q V
gi|4620191 664 PTLTTS-ATNAIYIVGQSAQVV 684
Big_1: domain 1 of 3, from 703 to 723: score 2.7, E = 1.9
CS EEEEEEEEET.TECEEEEEEEE
*->GtytVtAslanngatsvdaktV<-*
G t As++ +g++++d+ +V
gi|4620191 703 GGGTLRASIS-GGDSANDSLAV 723
Fil_haemagg: domain 2 of 2, from 764 to 844: score 2.2, E = 6.9
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-
*->vaaGaltlnaa..........alggldlnnggtlsagggltltaagl
a+G + +a++ + + ++++++++++++ t + g++++a g
gi|4620191 764 FASGVTSTQATdvakaikfsgGNTSSSAQRTITFTVTDGVGVSASGS 810
CS EEESSE...................EEEEESS-EEEEE
lnnggtliaggdlllaagalrnggdltltaaGdLdnsg<-*
+++++ l g + l+++ + ++g + ++G+++ s
gi|4620191 811 DTARALL---GPTILSSSYDPATG-NLVLTGGAFTTSV 844
Flagellin_IN: domain 1 of 7, from 794 to 816: score 6.9, E = 0.43
*->tltinggggkensvadgvdislsagdslaal<-*
t+t+++++g++ +s+s+ d++ al
gi|4620191 794 TITFTVTDGVG--------VSASGSDTARAL 816
FGGY_N: domain 1 of 1, from 802 to 818: score 1.4, E = 4.2
CS EEEEEEEEHHHHHHHHT
*->niPVvgGggDnaaaalG<-*
++ V++ g+D+a a+lG
gi|4620191 802 GVGVSASGSDTARALLG 818
Rrn6: domain 1 of 1, from 826 to 848: score 3.5, E = 0.5
*->yDPlvssLldlGkivdtsddrsg<-*
yDP +++L+ +G +++ts ++++
gi|4620191 826 YDPATGNLVLTGGAFTTSVADYT 848
DUF935: domain 1 of 1, from 833 to 896: score 0.8, E = 3
*->Lappagaptpaaad......................qatpaaaafaa
L+ ++ga+t ad + ++ + +++++++ + +++++ t +++++
gi|4620191 833 LVLTGGAFTTSVADytlnkltlsgegsstytlgngdAITGTPTSTSV 879
aaaaqepdqdalDaaad<-*
+++ ++q+a+Da++d
gi|4620191 880 TIHIASANQAAVDALLD 896
Chlorovi_GP_rpt: domain 1 of 2, from 862 to 881: score 4.7, E = 1.6
*->yFiGNGsfLtGvtatiPgtqni<-*
y +GNG ++tG++++ ++++i
gi|4620191 862 YTLGNGDAITGTPTS--TSVTI 881
CBM_20: domain 1 of 3, from 930 to 944: score 0.3, E = 19
CS EEEE--SSSEEEEEE
*->RsytvPasgtgtvtv<-*
+ +tv +sgt t+t+
gi|4620191 930 NAVTVTSSGTPTLTD 944
DUF2497: domain 1 of 1, from 1041 to 1086: score 2.0, E = 8.9
*->eeaLiSeetaeaaaaafgaLaaairrarpngsssggrTlEdlVrem<
++L +a+a aa++aLa air ++++ +g+rT+ V++m
gi|4620191 1041 GQNLTVTLNASATDAALAALAQAIRYNDTATTTGGDRTINFTVTDM 1086
-*
gi|4620191 - -
Reovirus_cap: domain 1 of 1, from 1070 to 1088: score 1.1, E = 2.7
*->dvlkfldktykvtvvdPmilG<-*
++++ +d+t +tv d + G
gi|4620191 1070 ATTTGGDRTINFTVTD--MYG 1088
PKD: domain 1 of 8, from 1078 to 1098: score 5.1, E = 0.51
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
t+ tv++++g +sat ++ +V
gi|4620191 1078 TINFTVTDMYGRSSAT-LSNVV 1098
RTX: domain 1 of 1, from 1115 to 1123: score -0.3, E = 2.3
*->tGaLTIDgt<-*
tG+LTI gt
gi|4620191 1115 TGLLTINGT 1123
DDR: domain 1 of 1, from 1162 to 1178: score -1.6, E = 7.9
*->mkliaGiDiGnsstEvAl<-*
kl++ iD n +t vAl
gi|4620191 1162 -KLVIQIDTSNQATMVAL 1178
CBM_20: domain 2 of 3, from 1216 to 1230: score 2.8, E = 3.8
CS EEEE--SSSEEEEEE
*->RsytvPasgtgtvtv<-*
+++tv +sgt t+t+
gi|4620191 1216 NTITVSSSGTPTLTD 1230
Adeno_shaft: domain 2 of 3, from 1285 to 1303: score 3.5, E = 8.8
CS S--EEE-B-TTEEE-T S-
*->nnsLtlntgpGLtvtn.na<-*
n++Lt+ t G+t+++++a
gi|4620191 1285 NDQLTVGTVGGITTSGsGA 1303
DUF2184: domain 1 of 1, from 1301 to 1318: score 2.3, E = 3.1
*->vGaAGkkiiagyAdDlPlvD<-*
+Ga+ +ii+++++ + +vD
gi|4620191 1301 SGAG--QIISYNGHQIGTVD 1318
CBM_20: domain 3 of 3, from 1325 to 1341: score 2.1, E = 6
CS SEEEEE--SSSEEEEEE
*->pNRsytvPasgtgtvtv<-*
pN+s+tv sgt++
gi|4620191 1325 PNHSLTVRFSGTYANDA 1341
Denso_VP4: domain 1 of 1, from 1328 to 1346: score 0.1, E = 4.6
CS SS-SSS--SSS--SS---X
*->sLtsAFnGLYGngAtLGnv<-*
sLt F G Y n A + +
gi|4620191 1328 SLTVRFSGTYANDAAVAAL 1346
DUF11: domain 1 of 2, from 1373 to 1411: score 0.6, E = 28
*->ttgatddlppnnnanatvtvtpvadlvitktvsnatarp<-*
+ +t++l+ n + +at+ + ++ +v + ++++ a++
gi|4620191 1373 YGKTTSTLTENVTVVATPAINGNGAVVGVGWSNAGGATF 1411
YscJ_FliF: domain 1 of 1, from 1382 to 1397: score 0.4, E = 6.1
*->dnVsVvdqpGelLssgassdqsa<-*
+nV+Vv +p a ++++a
gi|4620191 1382 ENVTVVATP-------AINGNGA 1397
DUF1155: domain 1 of 1, from 1408 to 1427: score 3.8, E = 1.7
*->msAtLsttLsFEPPLsLLAEP<-*
At +tt s+ PL++ A P
gi|4620191 1408 -GATFATTYSYSVPLAVAAGP 1427
Polyoma_coat2: domain 1 of 1, from 1408 to 1431: score 1.5, E = 2.7
*->gyrffgdWdheVPvVgLyqqnNMAL<-*
g++f+ +++++VP + +++++N AL
gi|4620191 1408 GATFATTYSYSVPLA-VAAGPNGAL 1431
Trypan_PARP: domain 1 of 1, from 1412 to 1435: score 3.2, E = 2.2
*->AtLKsvALPFAvAA...AALvAAF<-*
At s +P AvAA+++ AL AAF
gi|4620191 1412 ATTYSYSVPLAVAAgpnGALYAAF 1435
OmpH: domain 1 of 1, from 1419 to 1444: score 0.5, E = 10
*->lalallaaasaaaAqtta...kigvV<-*
++la++a +++a +++ + +++ig V
gi|4620191 1419 VPLAVAAGPNGALYAAFSangGIGHV 1444
SGL: domain 1 of 1, from 1474 to 1487: score 3.3, E = 1.1
*->GGpdldtLYvTSAr<-*
G p+ +tLYv S++
gi|4620191 1474 GTPNAGTLYVASSS 1487
TIG: domain 1 of 2, from 1480 to 1494: score 0.0, E = 40
CS EEEETTCTTCEEEEEEEEEE
*->svdgggsgdgrssspvtFtY<-*
++++++ sss+++F+Y
gi|4620191 1480 TLYVAS-----SSSYQSFYY 1494
FG-GAP: domain 1 of 1, from 1530 to 1547: score 3.3, E = 5.6
CS SSSSEEEEEETCCCSCC TSEEEEE
*->DGrpDlvvgaPgadggt.dgsvyll<-*
DG D++ ++ +gs yl+
gi|4620191 1530 DGTVDVAY-------FGvSGSSYLY 1547
PDT: domain 1 of 1, from 1535 to 1543: score 1.4, E = 5.2
*->iAYLGPrGT<-*
+AY+G+ G+
gi|4620191 1535 VAYFGVSGS 1543
DUF1510: domain 1 of 1, from 1655 to 1673: score 1.0, E = 3.1
*->sssnVekaytnPdWkPvGT<-*
ss+ V kay n +W +GT
gi|4620191 1655 SSPEVVKAYSNGSWTQIGT 1673
BetaGal_dom2: domain 1 of 1, from 1692 to 1704: score 0.6, E = 9.4
CS EEEEEEHHHHTTE
*->rvvLlDRnsAYnf<-*
+v+L+D + Y++
gi|4620191 1692 TVYLVDGTTVYTY 1704
MORN: domain 1 of 2, from 1791 to 1802: score 1.1, E = 47
CS CEEEEE-TTS-E
*->GkGvytwadGdr<-*
G+G yt +Gd
gi|4620191 1791 GSGSYTLGNGDA 1802
RAP-1: domain 1 of 1, from 1794 to 1822: score 2.3, E = 2.4
*->tkTLlqaDevvnaareayriNkDMsqsls<-*
+ TL++ D+v+ a + a iN + +++++
gi|4620191 1794 SYTLGNGDAVTSATNSAVTINIANANRAA 1822
Herpes_U59: domain 1 of 1, from 1816 to 1829: score 0.1, E = 5.7
*->vsvSRrDlvrlLrA<-*
+ + R+ +v+lL+A
gi|4620191 1816 ANANRAAVVALLNA 1829
ALF: domain 1 of 1, from 1820 to 1832: score 5.2, E = 1.5
*->RvavvrllatpgGp<-*
R+avv+ll+ gG+
gi|4620191 1820 RAAVVALLNA-GGT 1832
DUF1547: domain 1 of 1, from 1850 to 1869: score 1.9, E = 7
*->gsggivapkdqgeGvpsssa<-*
+sggi+ap + + +++s+
gi|4620191 1850 TSGGIIAPAYSINTIDVVST 1869
Flavi_M: domain 1 of 1, from 1855 to 1860: score 2.5, E = 3.6
*->vAPAYa<-*
+APAY+
gi|4620191 1855 IAPAYS 1860
Hep_Hag: domain 1 of 2, from 1914 to 1927: score 0.2, E = 68
CS ECSTT-EEESTT-E
*->AtganStAiGsnak<-*
A g+ +++iG+ +k
gi|4620191 1914 AGGNLTVSIGATNK 1927
Big_2: domain 2 of 5, from 1988 to 2015: score 2.6, E = 4.4
CS EEEEEEETTT.TEEES--SEEETTSEEEEE
*->avtsvtvsptgntaslakGatlqlkatvtp<-*
v+++++++t ++ + t+++++t+ +
gi|4620191 1988 LVNAIQFMDT--GTTTIGDRTVTFTVTDAY 2015
Proteasome: domain 1 of 1, from 1995 to 2003: score 1.5, E = 5
CS HHTS-EEEE
*->vktGtTivG<-*
++tGtT++G
gi|4620191 1995 MDTGTTTIG 2003
DUF756: domain 1 of 2, from 2003 to 2018: score 3.9, E = 3.3
*->GraaavftVydnlaygld<-*
G+ +++ftV+d ayg++
gi|4620191 2003 GDRTVTFTVTD--AYGRS 2018
Big_1: domain 2 of 3, from 2006 to 2016: score 0.1, E = 13
CS EEEEEEEETTT
*->TlTAtVkDanG<-*
T+T+tV+Da+G
gi|4620191 2006 TVTFTVTDAYG 2016
He_PIG: domain 1 of 3, from 2006 to 2016: score 2.7, E = 5.4
*->tftvtatdgsg<-*
t+t+t+td++g
gi|4620191 2006 TVTFTVTDAYG 2016
PKD: domain 2 of 8, from 2006 to 2026: score 6.3, E = 0.21
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
tVt tv++++g +sa + V
gi|4620191 2006 TVTFTVTDAYGRSSAG-MSDIV 2026
Herpes_ORF11: domain 1 of 1, from 2031 to 2062: score -0.2, E = 6.9
*->sdaapkiyldrlstaltwpggvvlnssklpkl<-*
+++++ + +++ +++lt+ gg + s++ ++l
gi|4620191 2031 GPTISGVTYNPFTGVLTLVGGNFVGSTGNVTL 2062
Glyco_hydro_28: domain 1 of 1, from 2059 to 2092: score -0.4, E = 9.8
CS EEEEEEEEEES.S...BS-SEEBSSS.......TT---
*->gvtwsdvditgsGkggkktssCeNvppslkGkqspasc<-*
+vt++d ++g+G ++ +++ + s + + +++sc
gi|4620191 2059 NVTLGDLTVSGEG---GASLTLSGAN-SSVTAITSTSC 2092
DUF1522: domain 1 of 1, from 2061 to 2073: score 2.2, E = 4.1
*->tgADLsItGtgdl<-*
t +DL+++G g +
gi|4620191 2061 TLGDLTVSGEGGA 2073
RTX_C: domain 1 of 2, from 2134 to 2159: score 2.0, E = 4.3
*->nsllglvssnalnnvastnsiqLArAA<-*
++ ++ ++na n v st +++L+ +A
gi|4620191 2134 GVTAPASPTNAIN-VSSTGTVTLTDTA 2159
Glug: domain 1 of 1, from 2140 to 2154: score 3.2, E = 4.1
*->npgsienctatgnvtvt<-*
+p++ n+++tg tvt
gi|4620191 2140 SPTNAINVSSTG--TVT 2154
Flagellin_D3: domain 1 of 1, from 2144 to 2172: score 5.2, E = 1.3
CS EEE-TT...T-BEEESTT-S--TTSS-TT--EEESEEE
*->eVtVddPTPadGkVtlaagattttaatPagateVTkvq<-*
+++V + +G+Vtl t t+ atP+++ +++++
gi|4620191 2144 AINVSS----TGTVTL----TDTAHATPTDT-NIQSTA 2172
Chlorovi_GP_rpt: domain 2 of 2, from 2146 to 2153: score 2.6, E = 7.1
*->NVvAtyGNV<-*
NV++t G+V
gi|4620191 2146 NVSST-GTV 2153
A2M_N: domain 1 of 1, from 2201 to 2255: score 0.2, E = 7
CS XXXXXXX.XXXX--E EEEEEESEEECSSEEE-EEEEE.........
*->vsdlglsaakqgedg.ylvfvpsllrggpvegvcVqllsrnnqvsdc
++ g+ a +++d+ + + + g+ +g +V+ +++
gi|4620191 2201 ATISGAN-ADSAHDQlAIAAINGITTSGSTAGSTVSY-------NGN 2239
CS ... ....S-SS-EEE
ggk.latgtTDadGev<-*
+ +++atg T+ +G +
gi|4620191 2240 QIGtIATGATGTPGQA 2255
Plasmid_RAQPRD: domain 1 of 1, from 2205 to 2220: score 2.6, E = 2.4
*->aaaAdaaaERerLaav<-*
+a Ad+a+ + ++aa+
gi|4620191 2205 GANADSAHDQLAIAAI 2220
LVIVD: domain 1 of 2, from 2252 to 2265: score 2.2, E = 8.9
*->gGdaqdvsVsGNYA<-*
+G a +++sG YA
gi|4620191 2252 PGQALTIKLSGQYA 2265
Spiralin: domain 1 of 1, from 2259 to 2275: score -0.5, E = 6.5
*->kisGeFKfnAKvtAtla<-*
k+sG++ nA v+A +
gi|4620191 2259 KLSGQYATNAAVQALVG 2275
Big_2: domain 3 of 5, from 2273 to 2301: score 0.6, E = 17
CS EEEEEEETTT.TEEES--SEEETTSEEEEE
*->avtsvtvsptgntaslakGatlqlkatvtp<-*
v ++++s++ +t+s + t+++ a + +
gi|4620191 2273 LVGAIQFSDN-GTTSSIGNRTVTFNASDAY 2301
Flagellin_IN: domain 2 of 7, from 2276 to 2299: score 1.6, E = 13
*->tltinggggkensvadgvdislsagd<-*
++++ +g++++ +++ +++++a d
gi|4620191 2276 AIQFSDNGTTSS--IGNRTVTFNASD 2299
SAFF: domain 1 of 1, from 2285 to 2313: score 6.5, E = 0.35
*->gsSrgpspvshgslAdtpGLnaSIaEvvNA<-*
+sS g+ v+ ++ d++G naSI+ +vN+
gi|4620191 2285 TSSIGNRTVTFNAS-DAYGRNASIVDTVNV 2313
PKD: domain 3 of 8, from 2292 to 2313: score 1.3, E = 7.3
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
tVt ++s+++g +++ tv V
gi|4620191 2292 TVTFNASDAYGRNASIVDTVNV 2313
Reovirus_M2: domain 1 of 1, from 2302 to 2315: score -1.4, E = 4.9
CS XXXXXXXXBXTTSS
*->GtvssiVnTiNvTG<-*
G siV+T+Nv G
gi|4620191 2302 GRNASIVDTVNVLG 2315
TIG: domain 2 of 2, from 2317 to 2353: score 7.1, E = 0.55
CS SEEEEEESESEETTTEEEEEEEESSBSSGG........ .TTEEEE
*->PvItsisPsgplsGGteiTitGsnlgsgsePrirkntf.dedisVt<
P ++s+ +p +G +TitG nl++ + ++++ ++sVt
gi|4620191 2317 PQVSSVAY-NPATG--ILTITGANLTTLA------ANYtLSGLSVT 2353
CS
-*
gi|4620191 - -
MORN: domain 2 of 2, from 2355 to 2367: score 5.0, E = 3.9
CS ECEEEEE-TTS-E
*->hGkGvytwadGdr<-*
+G+G+yt +Gd
gi|4620191 2355 EGSGTYTLGNGDS 2367
Curlin_rpt: domain 1 of 1, from 2417 to 2438: score 2.3, E = 7.5
*->daN..sAligQtnGsnNdatvtQdG<-*
daN+++++++Q+ +N++tvt +G
gi|4620191 2417 DANgtVSAFAQA---SNTITVTSTG 2438
Flagellin_IN: domain 3 of 7, from 2422 to 2438: score 3.0, E = 5.5
*->VsAsvdadtnggrLvltstt<-*
VsA++ a+ + +++tst+
gi|4620191 2422 VSAFAQAS---NTITVTSTG 2438
Big_2: domain 4 of 5, from 2428 to 2443: score 0.1, E = 24
CS EEEEEEETTT.TEEES-
*->avtsvtvsptgntasla<-*
a +++tv++t +t++la
gi|4620191 2428 ASNTITVTST-GTPTLA 2443
Hep_Hag: domain 2 of 2, from 2482 to 2495: score 3.4, E = 9.1
CS ECSTT-EEESTT-E
*->AtganStAiGsnak<-*
A g+ ++A+G+ ++
gi|4620191 2482 AGGNLTVAFGATNH 2495
Big_2: domain 5 of 5, from 2556 to 2583: score 0.1, E = 23
CS EEEEEEETTT.TEEES--SEEETTSEEEEE
*->avtsvtvsptgntaslakGatlqlkatvtp<-*
v+++++s++ +++ a l++++t+ +
gi|4620191 2556 LVNAIQFSDA--ATTTAGTRNLTFTVTDAY 2583
He_PIG: domain 2 of 3, from 2565 to 2584: score 2.0, E = 8.6
*->tptvqpGsytftvtatdgsg<-*
+ t+++G+ + t+t+td++g
gi|4620191 2565 AATTTAGTRNLTFTVTDAYG 2584
DUF756: domain 2 of 2, from 2570 to 2586: score 0.3, E = 30
*->tGraaavftVydnlaygld<-*
+G+ +ftV+d ayg++
gi|4620191 2570 AGTRNLTFTVTD--AYGRS 2586
P_gingi_FimA: domain 1 of 1, from 2635 to 2641: score -0.6, E = 3.3
*->VnQnAiW<-*
VnQn +W
gi|4620191 2635 VNQNETW 2641
Glycophorin_A: domain 1 of 1, from 2656 to 2686: score 4.9, E = 0.49
CS XX.XXXXXXXXXXXXXX......XXXXXXXXXXX
*->httsesGSatklyissqvvastvtndthtsdsaa<-*
t + +S++ +i+++vv t t+d +sd+ +
gi|4620191 2656 KT--LASSGS-TNIAGPVVTYTPTTDYVGSDTFT 2686
Flagellin_IN: domain 4 of 7, from 2684 to 2707: score 1.4, E = 15
*->tltinggggkensvadgvdislsa<-*
t+ti +++g + +va +++i++ a
gi|4620191 2684 TFTIQVSDGQGGVVAKTFNINVIA 2707
He_PIG: domain 3 of 3, from 2684 to 2694: score 1.7, E = 11
*->tftvtatdgsg<-*
tft++++dg g
gi|4620191 2684 TFTIQVSDGQG 2694
PKD: domain 4 of 8, from 2686 to 2705: score 1.9, E = 4.9
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t vs+g g ++a+t ++ V
gi|4620191 2686 TIQVSDGQGGVVAKTFNINV 2705
BNR: domain 2 of 2, from 2761 to 2771: score 4.9, E = 3.8
CS EESSTTSSEEE
*->yStDgGkTWsk<-*
+S DgGkTW+
gi|4620191 2761 TSGDGGKTWTV 2771
LVIVD: domain 2 of 2, from 2765 to 2775: score 0.8, E = 23
*->gGdaqdvsVsG<-*
gG+++ v+V G
gi|4620191 2765 GGKTWTVAVTG 2775
DUF1977: domain 1 of 1, from 2786 to 2806: score 1.5, E = 4
*->llsqLfsssftpssPpYSlsytpsskyt<-*
ll++L s + +YSl pss++t
gi|4620191 2786 LLNNLTSI-----TDSYSL--SPSSGFT 2806
Corona_M: domain 1 of 1, from 2800 to 2813: score 0.8, E = 4.7
*->epesvltdtekLlh<-*
+p+s tdt++L++
gi|4620191 2800 SPSSGFTDTASLYT 2813
SLAP: domain 1 of 1, from 2816 to 2842: score 2.7, E = 0.41
*->ndVdVTPsislnaavkannatptikasLt<-*
n+ V +s++lnaa +++++ t+ a++t
gi|4620191 2816 NTAPVISSVTLNAATYKIGG--TVTATIT 2842
DUF2499: domain 1 of 1, from 2820 to 2833: score 1.6, E = 6
*->llGNitLalAAwni<-*
++ ++tL +A+++i
gi|4620191 2820 VISSVTLNAATYKI 2833
A2M_N_2: domain 1 of 1, from 2822 to 2848: score 3.5, E = 2.2
*->LklsldkkeykvGetakvtvtgspfpag<-*
++l+ ++yk+G t+++t+t + + +g
gi|4620191 2822 SSVTLNAATYKIGGTVTATIT-TDAHDG 2848
PKD: domain 5 of 8, from 2893 to 2913: score 0.2, E = 16
CS EEEEEEEEEEETTCEEEEEEEE
*->GtYtVtLtvsngvgsasatttt<-*
G+ +V++ v ++vg++s+ t
gi|4620191 2893 GSVPVSVQVADAVGNTSTA-YT 2913
EF_TS: domain 1 of 1, from 2939 to 2956: score 1.1, E = 3.3
*->AAEGlvavyvdgdggkiGv<-*
AA+G+v++ ++ d +G+
gi|4620191 2939 AANGVVGTLSTTDA-STGA 2956
AIRS: domain 1 of 1, from 2966 to 2979: score 0.8, E = 9.1
CS HHHHHT-EEEE--E
*->acreaGvplvGGdT<-*
++++a ++ GG+T
gi|4620191 2966 GADAAKFQITGGNT 2979
PKD: domain 6 of 8, from 2981 to 3032: score 1.9, E = 4.6
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEEEE-SS.SSS
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsysWdFGDggsp
++a+ ++++ ++++t++ +s +d+ G++++ + + + +
gi|4620191 2981 AVAN-----ATTLTGNTSYTVNVRS-TDAG-GNAYTQTLTLTG---A 3017
CS EEEECSSEEEEEESS
gttstepnvtHtYsk<-*
++ s++ + t tY++
gi|4620191 3018 SGPSSSAGGTLTYNE 3032
DUF2179: domain 1 of 1, from 3041 to 3051: score 3.0, E = 5.6
*->RGVTildgeGg<-*
GVT+++++G+
gi|4620191 3041 TGVTLVNATGA 3051
MucBP: domain 2 of 2, from 3046 to 3059: score 3.2, E = 4.1
*->vnvtYtfngtiqtV<-*
vn+t+++n t +tV
gi|4620191 3046 VNATGAANMTGATV 3059
Tim17: domain 1 of 1, from 3063 to 3103: score 2.7, E = 3.4
*->AGalTGallaargngGpkaavvsaatgaalsaaiegvgrtf<-*
+G+++G +l +++ +G+ + s+ ++++ls+a+ ++ ++
gi|4620191 3063 SGFVAGDVLGFTNQNGITGSYNSGTGVLTLSGAASFADYQT 3103
VBS: domain 1 of 1, from 3097 to 3103: score 3.9, E = 1.2
CS SHHHHHH
*->tFVDYQT<-*
+F+DYQT
gi|4620191 3097 SFADYQT 3103
Cellulose_synt: domain 1 of 1, from 3140 to 3165: score -2.3, E = 9.2
*->AsifSLLWvrInPfvsktdgpslele<-*
As++S ++v P +s t ++s++++
gi|4620191 3140 ASTVSVVYVNAPPTLSLTSAASASIN 3165
DUF745: domain 1 of 1, from 3180 to 3191: score 0.4, E = 8.2
*->AAcAAqEAkqra<-*
A+++A+EA q +
gi|4620191 3180 ANSSAVEAGQSI 3191
SFT2: domain 1 of 1, from 3229 to 3243: score 2.4, E = 3.5
*->vwYsLSYiPgGrdgv<-*
++Ys+++i gG+++v
gi|4620191 3229 IAYSVGTITGGAATV 3243
RFX1_trans_act: domain 1 of 1, from 3283 to 3295: score 1.6, E = 4.2
*->VsSSgsTYliass<-*
+s Sg+T++++ss
gi|4620191 3283 ISDSGGTGAGGSS 3295
Aerolysin: domain 1 of 1, from 3291 to 3310: score 0.5, E = 5.5
*->nGkStTSktvsaqyratVPpn<-*
+G+S+T +t s q+++t ++n
gi|4620191 3291 AGGSST-TTLSNQATVTLSAN 3310
DUF11: domain 2 of 2, from 3322 to 3350: score 4.3, E = 2.8
*->TVtNtGpdtpArnVvVtDtLddtPaGltyvsgs<-*
T +Nt++++ +V V Dt+ ++G + +s
gi|4620191 3322 TISNTSANAI-SGVSVADTV---SGGSVSATVS 3350
Big_1: domain 3 of 3, from 3346 to 3375: score 0.2, E = 12
CS XGGEEEEECCEEEES-SEEESSSS--EEEEE
*->ivdqltAsitsiiadkttavAngndaiTlTA<-*
++ ++ + t+ ++ +++An++ ++T+ A
gi|4620191 3346 SATVSALHGTLGFTGA-GITANNSGSVTISA 3375
PMI_typeI: domain 1 of 1, from 3479 to 3499: score -0.2, E = 6.7
CS .TCEEEEE-T.T-EEEEEEESEEE
*->skgehtilplsdspSilicveGtg<-*
++g +ti+++ ds+S++i+ Gt+
gi|4620191 3479 TAGGATISGN-DSASVTIT--GTL 3499
BcsB: domain 1 of 1, from 3487 to 3510: score -0.1, E = 6.4
*->aadpasstrtltFrqLGapggplt<-*
+d+as+t t t++qL a+ ++lt
gi|4620191 3487 GNDSASVTITGTLAQLNAALASLT 3510
KH_1: domain 1 of 3, from 3487 to 3509: score 4.2, E = 1.5
CS TTTTSEEEEEESCHHHHHHHHH..HH
*->dddedtvtIsGstpeavekAkerflI<-*
++d+ vtI+G t ++ ++A++ +
gi|4620191 3487 GNDSASVTITG-TLAQLNAALA--SL 3509
GspM_II: domain 1 of 1, from 3490 to 3509: score 1.6, E = 7.4
*->avrvslegsleaLqqlLysL<-*
+ +v+++g+l++L+++L+sL
gi|4620191 3490 SASVTITGTLAQLNAALASL 3509
Tymo_coat: domain 1 of 1, from 3490 to 3500: score 3.9, E = 1.4
CS SEEEEEEEEEE
*->TAsitIsGklr<-*
+As+tI+G+l
gi|4620191 3490 SASVTITGTLA 3500
Cadherin: domain 2 of 2, from 3522 to 3543: score 1.9, E = 7.9
CS --EEE----.........S---EEEE--EEE-
*->eLtveAtDadpllasgggpplsstatvtitVl<-*
++++ ++D+ ++s+ +v++tV
gi|4620191 3522 VISIGVSDN----------GKSASSSVNVTVN 3543
F420_ligase: domain 1 of 1, from 3534 to 3555: score 2.2, E = 3.4
*->AaAAdLvmGeadegtPvvviRGl<-*
A+ + +v +++ tP+v + G+
gi|4620191 3534 ASSSVNVTVNGND-TPIVTVAGA 3555
PKD: domain 7 of 8, from 3569 to 3586: score 2.6, E = 2.9
CS EEEEETTCEEEEEEEEEEE
*->LtvsngvgsasattttvtV<-*
+ vs++ g as+t +t+t
gi|4620191 3569 VSVSDSLGGASVT-ATLTA 3586
DUF461: domain 1 of 1, from 3577 to 3594: score 3.0, E = 3.1
CS TCEEEEEE--TTT..---EEE
*->GdtVplTLtFedgGrgtveve<-*
G +V+ TL ++g gt++v+
gi|4620191 3577 GASVTATL-TANG--GTLQVT 3594
UnbV_ASPIC: domain 1 of 1, from 3577 to 3598: score 1.8, E = 7.4
*->GAtVtvttPgdrvltrqVtgGgG<-*
GA Vt+t ++ t qVt+G+G
gi|4620191 3577 GASVTATL-TANGGTLQVTAGSG 3598
Flagellin_IN: domain 5 of 7, from 3580 to 3597: score 3.7, E = 3.5
*->VsAsvdadtnggrLvltstt<-*
V+A+++a++ g L++t+
gi|4620191 3580 VTATLTANG--GTLQVTAGS 3597
Adeno_shaft: domain 3 of 3, from 3588 to 3604: score 5.9, E = 1.9
CS S--EEE-B-TTEEE-TS
*->nnsLtlntgpGLtvtnn<-*
+++L + +g G+t+t+n
gi|4620191 3588 GGTLQVTAGSGITITGN 3604
KH_1: domain 2 of 3, from 3603 to 3625: score 2.1, E = 6.1
CS TTTTSEEEEEESCHHHHHHHHH..HH
*->dddedtvtIsGstpeavekAkerflI<-*
+++ + vtIsG t++ v+ A+ +
gi|4620191 3603 GNGTGNVTISG-TQAVVNTALG--TL 3625
GFA: domain 1 of 1, from 3647 to 3691: score 1.9, E = 7.5
CS -EEEEEE--T...............TSTTTTEEEE-GGGBSS--S
*->Gsplfwrgpdgpeivivavgalddpapfppvlhvfvdsklpwlsl<-
G+ l + ++++++ v++ +++ p+++ p+ + ++d ++ +s+
gi|4620191 3647 GTNLVSGAKNASATIFVSLTGNESPTITTPAAQSYTDALQHAISG 3691
CS
*
gi|4620191 - -
TPD52: domain 1 of 1, from 3650 to 3660: score 3.4, E = 1.2
*->vlssaagaSAt<-*
++s+a +aSAt
gi|4620191 3650 LVSGAKNASAT 3660
PCMT: domain 1 of 1, from 3655 to 3670: score 2.0, E = 3
CS EEEEEE---B--GGGS
*->kdlesVrfVPLtdreg<-*
k+ +++fV Lt++e+
gi|4620191 3655 KNASATIFVSLTGNES 3670
RTX_C: domain 2 of 2, from 3716 to 3754: score 3.1, E = 2.1
*->FtssnGkamdsrnsllglvssnalnnvastnsiqLArAA<-*
Ft+s G ++s ns+ + ++ ++ +a +ns+ +++A
gi|4620191 3716 FTASGGASIGSNNSGSVTITGSLADVSATLNSLKYTTTA 3754
ETX_MTX2: domain 1 of 1, from 3729 to 3777: score 1.4, E = 4.3
CS ...EE--BTTB--EE....EEEESGGGT-TTTS.....-TTS-E.EE
*->sgsdivslvsfprdgyvypassvltaswnllpigfslnnsdntlvdf
sgs +++ ++ + ++ + ++ ta++++++++++++n+++ ++++
gi|4620191 3729 SGSVTITGSLADVSATLNSLKYTTTATTTTSDTISLSVNDNGANANL 3775
CS EE
kG<-*
+G
gi|4620191 3776 IG 3777
PKD: domain 8 of 8, from 3819 to 3834: score 0.5, E = 12
CS EEETTCEEEEEEEEEEE
*->vsngvgsasattttvtV<-*
v++ ++as+t +tvt
gi|4620191 3819 VTDTLSAASVT-ATVTA 3834
Flagellin_IN: domain 6 of 7, from 3828 to 3845: score 4.3, E = 2.4
*->VsAsvdadtnggrLvltstt<-*
V+A+v+a+ g+L++t+++
gi|4620191 3828 VTATVTAQS--GNLNFTASG 3845
KH_1: domain 3 of 3, from 3851 to 3873: score 0.7, E = 16
CS TTTTSEEEEEESCHHHHHHHHH..HH
*->dddedtvtIsGstpeavekAkerflI<-*
+++++ vt+sG + ++v++ ++ +
gi|4620191 3851 SNNSGNVTVSG-SLADVNATLA--SL 3873
Flagellin_IN: domain 7 of 7, from 3908 to 3932: score 1.1, E = 19
*->tltinggggkensvadgvdislsagdslaal<-*
+++in +g +++ ++++a+ ++ +l
gi|4620191 3908 SFQINLTGNDAP------VVTVPATQDITDL 3932
PfkB: domain 1 of 1, from 3934 to 3954: score 1.0, E = 4.9
CS HHHHHHHHHTSSSSGGGSSSH
*->anavAalvvqkkGaisslptl<-*
a+a+++++v+ + ++++ p +
gi|4620191 3934 AHALSGISVSDTYTGTPSPPR 3954
//