hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 46241610.fa
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Query sequence: gi|46241610|gb|AAS82995.1|
Accession: [none]
Description: putative calcium-binding protein-like protein [Azospirillum brasilense]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 305.2 2.3e-91 21
GYD GYD domain 7.6 0.26 1
SH3_4 Bacterial SH3 domain 5.5 0.51 1
PSCyt1 Planctomycete cytochrome C 4.9 0.59 1
E_Pc_C Enhancer of Polycomb C-terminus 2.4 0.66 1
PIR Yeast PIR protein repeat 5.3 1.9 1
UnbV_ASPIC ASPIC and UnbV 2.7 3.8 1
Dockerin_1 Dockerin type I repeat 4.0 4.3 1
Sen15 Sen15 protein 1.2 5.6 1
PadR Transcriptional regulator PadR-like f 2.0 5.9 1
SBP_bac_5 Bacterial extracellular solute-bindin 0.2 6.5 1
RNR_inhib Ribonucleotide reductase inhibitor 1.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PadR 1/1 33 43 .. 79 89 .] 2.0 5.9
UnbV_ASPIC 1/1 81 91 .. 1 11 [. 2.7 3.8
PSCyt1 1/1 90 116 .. 2 37 .. 4.9 0.59
Sen15 1/1 150 166 .. 1 17 [. 1.2 5.6
SH3_4 1/1 153 165 .. 45 57 .] 5.5 0.51
HemolysinCabind 1/21 166 183 .. 1 18 [] 7.8 0.35
HemolysinCabind 2/21 184 201 .. 1 18 [] 22.4 1.3e-05
HemolysinCabind 3/21 202 219 .. 1 18 [] 20.7 4.2e-05
HemolysinCabind 4/21 281 298 .. 1 18 [] 14.9 0.0024
HemolysinCabind 5/21 299 316 .. 1 18 [] 20.4 5.3e-05
HemolysinCabind 6/21 317 334 .. 1 18 [] 19.4 0.0001
SBP_bac_5 1/1 318 360 .. 428 490 .] 0.2 6.5
HemolysinCabind 7/21 335 352 .. 1 18 [] 21.7 2e-05
HemolysinCabind 8/21 353 370 .. 1 18 [] 13.7 0.0054
HemolysinCabind 9/21 371 388 .. 1 18 [] 23.7 5.2e-06
HemolysinCabind 10/21 389 406 .. 1 18 [] 22.1 1.6e-05
HemolysinCabind 11/21 450 462 .. 1 13 [. 2.5 13
HemolysinCabind 12/21 468 485 .. 1 18 [] 13.8 0.0052
HemolysinCabind 13/21 486 502 .. 1 17 [. 11.5 0.025
HemolysinCabind 14/21 504 521 .. 1 18 [] 19.5 9.7e-05
HemolysinCabind 15/21 522 539 .. 1 18 [] 18.7 0.00017
HemolysinCabind 16/21 540 557 .. 1 18 [] 11.3 0.03
HemolysinCabind 17/21 569 580 .. 7 18 .] 13.7 0.0054
HemolysinCabind 18/21 585 602 .. 1 18 [] 4.5 3.5
GYD 1/1 640 661 .. 73 94 .] 7.6 0.26
PIR 1/1 685 698 .. 5 18 .] 5.3 1.9
E_Pc_C 1/1 722 729 .. 1 8 [. 2.4 0.66
HemolysinCabind 19/21 807 824 .. 1 18 [] 2.9 11
HemolysinCabind 20/21 828 842 .. 4 18 .] 4.4 3.7
HemolysinCabind 21/21 843 860 .. 1 18 [] 15.6 0.0015
RNR_inhib 1/1 903 942 .. 43 98 .. 1.2 10
Dockerin_1 1/1 914 923 .. 1 10 [. 4.0 4.3
Alignments of top-scoring domains:
PadR: domain 1 of 1, from 33 to 43: score 2.0, E = 5.9
*->TdaGrreLaer<-*
Td+G+++La++
gi|4624161 33 TDDGHAVLAAV 43
UnbV_ASPIC: domain 1 of 1, from 81 to 91: score 2.7, E = 3.8
*->dAiGAtVtvtt<-*
dA+G+ +++++
gi|4624161 81 DARGTEIHIHA 91
PSCyt1: domain 1 of 1, from 90 to 116: score 4.9, E = 0.59
*->fdCHGpddqEgeagLrldsrdaalrgGdSGEaaivP<-*
++CH+++ +Eg L ld ++aa +a+v+
gi|4624161 90 HACHAGAGAEG--RLLLDRLAAAT-------GAVVA 116
Sen15: domain 1 of 1, from 150 to 166: score 1.2, E = 5.6
*->DGGGAPsWAPEDAWmGt<-*
+G GA WA E A Gt
gi|4624161 150 EGAGARGWAHELAVTGT 166
SH3_4: domain 1 of 1, from 153 to 165: score 5.5, E = 0.51
*->GatGWiyqslLwG<-*
Ga+GW++ +++G
gi|4624161 153 GARGWAHELAVTG 165
HemolysinCabind: domain 1 of 21, from 166 to 183: score 7.8, E = 0.35
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ ++GnDtL+ ++ +D +
gi|4624161 166 TPTDGNDTLTSDDAADNI 183
HemolysinCabind: domain 2 of 21, from 184 to 201: score 22.4, E = 1.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaGnD+L G++GnDtl
gi|4624161 184 NGGAGNDILIGNGGNDTL 201
HemolysinCabind: domain 3 of 21, from 202 to 219: score 20.7, E = 4.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+Dt++GgaG+D++
gi|4624161 202 IGGVGHDTMDGGAGADVF 219
HemolysinCabind: domain 4 of 21, from 281 to 298: score 14.9, E = 0.0024
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G aG+D+ GgaGnDt
gi|4624161 281 WGHAGDDVEIGGAGNDTM 298
HemolysinCabind: domain 5 of 21, from 299 to 316: score 20.4, E = 5.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+GnDt yGg+G+D++
gi|4624161 299 ESGDGNDTVYGGDGDDQI 316
HemolysinCabind: domain 6 of 21, from 317 to 334: score 19.4, E = 0.0001
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
y a nD+LyG aGnD++
gi|4624161 317 YSRADNDVLYGEAGNDLI 334
SBP_bac_5: domain 1 of 1, from 318 to 360: score 0.2, E = 6.5
CS HHTTT--...............HHHHHH.H.HHHTT-SEEEEEEE-T
*->sdadwatyvatptdsdpevrdladdlldaepvlegdfdlallgwgad
s+ad++++ e++ dl+ +gwg d
gi|4624161 318 SRADNDVL-----------------------YGEAGNDLIYGGWGND 341
CS TSCTH HHHHCCSCT C T
ypdpp.fldpflsat.g.g<-*
d+ + d+++++++ ++
gi|4624161 342 MLDGGaGNDTLFGEGdAdT 360
HemolysinCabind: domain 7 of 21, from 335 to 352: score 21.7, E = 2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG GnD L+GgaGnDtl
gi|4624161 335 YGGWGNDMLDGGAGNDTL 352
HemolysinCabind: domain 8 of 21, from 353 to 370: score 13.7, E = 0.0054
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G + Dt++Gg+G+D l
gi|4624161 353 FGEGDADTINGGDGDDSL 370
HemolysinCabind: domain 9 of 21, from 371 to 388: score 23.7, E = 5.2e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnD ++GgaGnDtl
gi|4624161 371 DGGQGNDLMNGGAGNDTL 388
HemolysinCabind: domain 10 of 21, from 389 to 406: score 22.1, E = 1.6e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+Dt+ GgaG+D++
gi|4624161 389 IGGLGHDTMEGGAGADVF 406
HemolysinCabind: domain 11 of 21, from 450 to 462: score 2.5, E = 13
CS E--SSS-EEEEES
*->yGGaGnDtLyGga<-*
+G + +D+L G++
gi|4624161 450 IGSEFDDRLVGND 462
HemolysinCabind: domain 12 of 21, from 468 to 485: score 13.8, E = 0.0052
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +GnD+ GgaGnDt
gi|4624161 468 WGHGGNDVEIGGAGNDTM 485
HemolysinCabind: domain 13 of 21, from 486 to 502: score 11.5, E = 0.025
CS E--SSS-EEEEESSCGE
*->yGGaGnDtLyGgaGnDt<-*
G GnDt+yGg+G+D+
gi|4624161 486 ESGIGNDTIYGGGGDDR 502
HemolysinCabind: domain 14 of 21, from 504 to 521: score 19.5, E = 9.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G a +D LyG aGnD+l
gi|4624161 504 FGRADDDMLYGEAGNDLL 521
HemolysinCabind: domain 15 of 21, from 522 to 539: score 18.7, E = 0.00017
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG+GnD L+Gg GnDtl
gi|4624161 522 AGGGGNDMLDGGTGNDTL 539
HemolysinCabind: domain 16 of 21, from 540 to 557: score 11.3, E = 0.03
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ G Dt+ Gg+G+D++
gi|4624161 540 IGDWGVDTMIGGDGDDVF 557
HemolysinCabind: domain 17 of 21, from 569 to 580: score 13.7, E = 0.0054
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
D++ GgaGnDt+
gi|4624161 569 DIIQGGAGNDTF 580
HemolysinCabind: domain 18 of 21, from 585 to 602: score 4.5, E = 3.5
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+aG + +Gg+G Dtl
gi|4624161 585 QSDAGTVSYDGGEGTDTL 602
GYD: domain 1 of 1, from 640 to 661: score 7.6, E = 0.26
*->GnVRktrTlrAfpvdemaeilk<-*
G+VR t+T+ A + +a+i++
gi|4624161 640 GSVRHTVTMTAAQANGFASIIG 661
PIR: domain 1 of 1, from 685 to 698: score 5.3, E = 1.9
*->SQItDGQvQatttt<-*
SQ t GQvQa t
gi|4624161 685 SQLTAGQVQAETVN 698
E_Pc_C: domain 1 of 1, from 722 to 729: score 2.4, E = 0.66
*->afTaEQYQ<-*
+fTa Q+Q
gi|4624161 722 GFTADQFQ 729
HemolysinCabind: domain 19 of 21, from 807 to 824: score 2.9, E = 11
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+a +L G +GnD l
gi|4624161 807 LGDARSEVLGGSDGNDFL 824
HemolysinCabind: domain 20 of 21, from 828 to 842: score 4.4, E = 3.7
CS SSS-EEEEESSCGEE
*->aGnDtLyGgaGnDtl<-*
+G+D GgaG+D+l
gi|4624161 828 GGDDAAAGGAGDDVL 842
HemolysinCabind: domain 21 of 21, from 843 to 860: score 15.6, E = 0.0015
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G + L Gg+G Dt+
gi|4624161 843 DGGSGSNWLIGGSGKDTF 860
RNR_inhib: domain 1 of 1, from 903 to 942: score 1.2, E = 10
*->aeGYktpgiAGFPWmDdsnkkNtrnkidrtnaslngvsgsvaaaaps
aeGYk+ + +++d ++++ s + a++a +
gi|4624161 903 AEGYKGAT----------------VHCDIDGNGTVDASMTFAGKAVG 933
afcstddel<-*
a ++t++++
gi|4624161 934 AMTTTTGTM 942
Dockerin_1: domain 1 of 1, from 914 to 923: score 4.0, E = 4.3
CS -TT-SS--SH
*->DvNgDGkVna<-*
D++g+G+V+a
gi|4624161 914 DIDGNGTVDA 923
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