hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 46241611.fa
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Query sequence: gi|46241611|gb|AAS82996.1|
Accession: [none]
Description: hypothetical protein pRhico033 [Azospirillum brasilense]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 169.3 3.8e-50 11
GSPII_G Bacterial type II secretion system pr 4.2 0.97 1
PNP_UDP_1 Phosphorylase superfamily 2.2 3.4 1
UnbV_ASPIC ASPIC and UnbV 2.7 3.8 1
IFNGR1 Interferon gamma receptor alpha chain -1.1 4.1 1
Dockerin_1 Dockerin type I repeat 4.1 4.1 1
Flagellin_IN Flagellin hook IN motif 3.4 4.1 1
Urm1 Urm1 (Ubiquitin related modifier) -1.1 4.2 1
PSCyt1 Planctomycete cytochrome C 2.1 4.2 1
PIR Yeast PIR protein repeat 3.6 5.8 1
Nrf1_activ_bdg Nrf1 activator activation site bindin 1.4 9.5 1
RNR_inhib Ribonucleotide reductase inhibitor 1.3 9.6 1
DEAD_assoc DEAD/H associated 0.8 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNP_UDP_1 1/1 27 51 .. 253 277 .] 2.2 3.4
UnbV_ASPIC 1/1 87 97 .. 1 11 [. 2.7 3.8
PSCyt1 1/1 96 116 .. 2 24 .. 2.1 4.2
DEAD_assoc 1/1 145 153 .. 184 192 .] 0.8 9.8
HemolysinCabind 1/11 185 202 .. 1 18 [] 25.9 1.1e-06
HemolysinCabind 2/11 203 216 .. 1 14 [. 11.5 0.025
HemolysinCabind 3/11 273 290 .. 1 18 [] 18.8 0.00015
HemolysinCabind 4/11 291 308 .. 1 18 [] 22.1 1.5e-05
Urm1 1/1 298 302 .. 109 113 .] -1.1 4.2
HemolysinCabind 5/11 309 326 .. 1 18 [] 16.1 0.001
IFNGR1 1/1 324 337 .. 468 481 .. -1.1 4.1
HemolysinCabind 6/11 327 344 .. 1 18 [] 21.6 2.3e-05
GSPII_G 1/1 331 348 .. 96 114 .] 4.2 0.97
HemolysinCabind 7/11 345 362 .. 1 18 [] 10.4 0.056
HemolysinCabind 8/11 374 385 .. 7 18 .] 13.9 0.0047
Flagellin_IN 1/1 384 408 .. 1 32 [. 3.4 4.1
HemolysinCabind 9/11 390 407 .. 1 18 [] 5.8 1.3
PIR 1/1 491 504 .. 5 18 .] 3.6 5.8
HemolysinCabind 10/11 647 664 .. 1 18 [] 22.2 1.5e-05
HemolysinCabind 11/11 666 673 .. 11 18 .] 0.8 44
Nrf1_activ_bdg 1/1 676 692 .. 102 118 .] 1.4 9.5
RNR_inhib 1/1 716 755 .. 43 98 .. 1.3 9.6
Dockerin_1 1/1 727 736 .. 1 10 [. 4.1 4.1
Alignments of top-scoring domains:
PNP_UDP_1: domain 1 of 1, from 27 to 51: score 2.2, E = 3.4
CS ..------HHHHHHHHHHHHH HHHH
*->RReeveefleeaaeraaalal.alla<-*
RR +v+ +l aa++a+a+ l a+la
gi|4624161 27 RRPDVQVMLVSAADDAHAV-LaAALA 51
UnbV_ASPIC: domain 1 of 1, from 87 to 97: score 2.7, E = 3.8
*->dAiGAtVtvtt<-*
dA+G+ +++++
gi|4624161 87 DARGTEIHIHA 97
PSCyt1: domain 1 of 1, from 96 to 116: score 2.1, E = 4.2
*->fdCHGpddqEgeagLrldsrdaa<-*
++CH+++ +Eg L ld ++aa
gi|4624161 96 HACHAGAGAEG--RLLLDRLAAA 116
DEAD_assoc: domain 1 of 1, from 145 to 153: score 0.8, E = 9.8
*->eleePSPfA<-*
++ +PSPfA
gi|4624161 145 PVGTPSPFA 153
HemolysinCabind: domain 1 of 11, from 185 to 202: score 25.9, E = 1.1e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GGaGnDtL+Gg+GnDtl
gi|4624161 185 EGGAGNDTLNGGGGNDTL 202
HemolysinCabind: domain 2 of 11, from 203 to 216: score 11.5, E = 0.025
CS E--SSS-EEEEESS
*->yGGaGnDtLyGgaG<-*
+GGaG D+L+GgaG
gi|4624161 203 IGGAGADVLNGGAG 216
HemolysinCabind: domain 3 of 11, from 273 to 290: score 18.8, E = 0.00015
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ +G D+ +GgaG+Dtl
gi|4624161 273 WAHDGADSVTGGAGDDTL 290
HemolysinCabind: domain 4 of 11, from 291 to 308: score 22.1, E = 1.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+GnDt +GgaGnD++
gi|4624161 291 ESGNGNDTVHGGAGNDQI 308
Urm1: domain 1 of 1, from 298 to 302: score -1.1, E = 4.2
CS -----
*->TLHGG<-*
T+HGG
gi|4624161 298 TVHGG 302
HemolysinCabind: domain 5 of 11, from 309 to 326: score 16.1, E = 0.001
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G a +D LyG++G+D+l
gi|4624161 309 FGRADDDMLYGDDGDDLL 326
IFNGR1: domain 1 of 1, from 324 to 337: score -1.1, E = 4.1
*->DvlVDdsGKESLiG<-*
D+lV ++GK SL+G
gi|4624161 324 DLLVGGGGKDSLMG 337
HemolysinCabind: domain 6 of 11, from 327 to 344: score 21.6, E = 2.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG+G D+L GgaGnDtl
gi|4624161 327 VGGGGKDSLMGGAGNDTL 344
GSPII_G: domain 1 of 1, from 331 to 348: score 4.2, E = 0.97
CS TTTS--...EEE--.TT-E
*->GaDGqpGGeGtdaDpIgnW<-*
G+D GG G+d +g W
gi|4624161 331 GKDSLMGGAGNDTL-VGDW 348
HemolysinCabind: domain 7 of 11, from 345 to 362: score 10.4, E = 0.056
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+ Dt+ Gg+G+D++
gi|4624161 345 VGDWDADTMIGGDGDDVF 362
HemolysinCabind: domain 8 of 11, from 374 to 385: score 13.9, E = 0.0047
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
D++ GgaGnDt+
gi|4624161 374 DVIEGGAGNDTF 385
Flagellin_IN: domain 1 of 1, from 384 to 408: score 3.4, E = 4.1
*->tltinggggkensvadgvdislsagdslaala<-*
t+ i ++g ++ +s+++g+ +++l+
gi|4624161 384 TFIIAAQGDAGT-------VSYDGGTGTDTLR 408
HemolysinCabind: domain 9 of 11, from 390 to 407: score 5.8, E = 1.3
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+aG + +Gg G Dtl
gi|4624161 390 QGDAGTVSYDGGTGTDTL 407
PIR: domain 1 of 1, from 491 to 504: score 3.6, E = 5.8
*->SQItDGQvQatttt<-*
SQ + GQvQa t
gi|4624161 491 SQLGAGQVQAETVD 504
HemolysinCabind: domain 10 of 11, from 647 to 664: score 22.2, E = 1.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaG+D+L+Gg+G ++l
gi|4624161 647 WGGAGDDVLDGGSGSNWL 664
HemolysinCabind: domain 11 of 11, from 666 to 673: score 0.8, E = 44
CS EESSCGEE
*->GgaGnDtl<-*
Gg G Dt+
gi|4624161 666 GGTGKDTF 673
Nrf1_activ_bdg: domain 1 of 1, from 676 to 692: score 1.4, E = 9.5
*->DavgsegqavqVvtLqd<-*
D+ g+e++ ++Vv L++
gi|4624161 676 DGRGTETTWSTVVDLEQ 692
RNR_inhib: domain 1 of 1, from 716 to 755: score 1.3, E = 9.6
*->aeGYktpgiAGFPWmDdsnkkNtrnkidrtnaslngvsgsvaaaaps
aeGYk+ + +++d +++++ s + ++a +
gi|4624161 716 AEGYKGAT----------------VHCDIDGNGTIDASMTFTGKAVG 746
afcstddel<-*
a ++t++++
gi|4624161 747 AMTTTTGTM 755
Dockerin_1: domain 1 of 1, from 727 to 736: score 4.1, E = 4.1
CS -TT-SS--SH
*->DvNgDGkVna<-*
D++g+G+++a
gi|4624161 727 DIDGNGTIDA 736
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