hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 47214405.fa
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Query sequence: gi|47214405|emb|CAG00886.1|
Accession: [none]
Description: unnamed protein product [Tetraodon nigroviridis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 58.4 6.1e-17 1
F-box F-box domain 24.8 4.4e-06 1
AdoMet_dc S-adenosylmethionine decarboxylase 5.9 0.31 1
Defensin_beta Beta defensin 4.2 0.47 1
CITED CITED 2.1 0.54 1
MbeD_MobD MbeD/MobD like 4.6 0.94 1
RNA_pol_I_A49 A49-like RNA polymerase I associated 1.6 1.6 1
Maf Maf-like protein 2.4 1.8 1
ABC_cobalt ABC-type cobalt transport system, per 4.4 1.9 1
BCDHK_Adom3 Mitochondrial branched-chain alpha-ke 2.3 2.1 1
TRAUB TRAUB (NUC102) domain 2.9 2.5 1
PetM PetM family of cytochrome b6f complex 2.9 3.1 1
HemS Haemin-degrading family -0.2 3.4 1
Toxin_9 Spider toxin 3.9 3.6 1
Cas_Cas5a CRISPR-associated protein (Cas_Cas5a) 2.2 4.3 1
GTP_cyclohydroI GTP cyclohydrolase I 1.7 4.5 1
ArgJ ArgJ family 0.9 4.6 1
Dpy-30 Dpy-30 motif 3.7 4.9 1
NikR_C NikR C terminal nickel binding domain 2.7 5 1
FixO Cytochrome C oxidase, mono-heme subun 1.3 5.1 1
DUF2113 Uncharacterized protein conserved in 1.5 5.1 1
VanY D-alanyl-D-alanine carboxypeptidase 1.3 5.3 1
Hpr_kinase_N HPr Serine kinase N terminus 1.2 6.4 1
DDDD Putative mitochondrial precursor prot -0.2 7.5 1
EcoEI_R_C EcoEI R protein C-terminal 0.4 8.1 1
DUF2201 Predicted metallopeptidase (DUF2201) -0.9 8.4 1
Nefa_Nip30_N N-terminal domain of NEFA-interacting 1.8 8.6 1
DUF570 Protein of unknown function (DUF570) -0.5 9.2 1
DUF533 Protein of unknown function (DUF533) 0.4 9.2 1
DUF848 Gammaherpesvirus protein of unknown f 0.4 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GTP_cyclohydroI 1/1 31 46 .. 90 105 .] 1.7 4.5
ArgJ 1/1 70 80 .. 38 48 .. 0.9 4.6
AdoMet_dc 1/1 75 97 .. 106 128 .] 5.9 0.31
TRAUB 1/1 152 165 .. 74 87 .] 2.9 2.5
Toxin_9 1/1 162 178 .. 1 19 [. 3.9 3.6
Defensin_beta 1/1 166 177 .. 25 36 .] 4.2 0.47
F-box 1/1 190 237 .. 1 46 [] 24.8 4.4e-06
Hpr_kinase_N 1/1 199 208 .. 120 129 .] 1.2 6.4
VanY 1/1 220 227 .. 155 162 .] 1.3 5.3
HemS 1/1 222 232 .. 345 355 .] -0.2 3.4
RNA_pol_I_A49 1/1 228 238 .. 410 420 .] 1.6 1.6
DDDD 1/1 296 332 .. 1 37 [. -0.2 7.5
PetM 1/1 342 350 .. 34 45 .] 2.9 3.1
BCDHK_Adom3 1/1 396 404 .. 1 9 [. 2.3 2.1
DUF848 1/1 396 412 .. 1 17 [. 0.4 9.8
ABC_cobalt 1/1 403 418 .. 117 132 .] 4.4 1.9
NikR_C 1/1 410 419 .. 1 10 [. 2.7 5
DUF2201 1/1 416 422 .. 1 7 [. -0.9 8.4
DUF570 1/1 419 430 .. 440 451 .] -0.5 9.2
CITED 1/1 478 508 .. 154 186 .. 2.1 0.54
Cas_Cas5a 1/1 491 513 .. 1 23 [. 2.2 4.3
Nefa_Nip30_N 1/1 507 522 .. 1 18 [. 1.8 8.6
DUF2113 1/1 521 533 .. 179 191 .] 1.5 5.1
MbeD_MobD 1/1 575 590 .. 62 77 .] 4.6 0.94
Dpy-30 1/1 577 590 .. 29 42 .] 3.7 4.9
EcoEI_R_C 1/1 581 592 .. 100 111 .. 0.4 8.1
DUF533 1/1 623 644 .. 173 194 .. 0.4 9.2
RhoGEF 1/1 624 732 .. 1 124 [. 58.4 6.1e-17
FixO 1/1 635 644 .. 218 227 .] 1.3 5.1
Maf 1/1 636 647 .. 202 213 .] 2.4 1.8
Alignments of top-scoring domains:
GTP_cyclohydroI: domain 1 of 1, from 31 to 46: score 1.7, E = 4.5
*->GgiktgsetvTsaagg<-*
Gg++ g + +T+a++g
gi|4721440 31 GGRHVGYSHNTGAQPG 46
ArgJ: domain 1 of 1, from 70 to 80: score 0.9, E = 4.6
CS E--TT--HHHH
*->TtNrfkAAPVl<-*
T+N+++AAPV+
gi|4721440 70 TQNQVQAAPVI 80
AdoMet_dc: domain 1 of 1, from 75 to 97: score 5.9, E = 0.31
*->kAleyLieaLkpkrvtvdeivRG<-*
+A ++++++ ++ +v+e++RG
gi|4721440 75 QAAPVIQHSFLTDVSDVQEMERG 97
TRAUB: domain 1 of 1, from 152 to 165: score 2.9, E = 2.5
*->WsDeqidELFasLF<-*
W+D q+ L asL+
gi|4721440 152 WTDRQRKHLMASLL 165
Toxin_9: domain 1 of 1, from 162 to 178: score 3.9, E = 3.6
CS SB-STTBB--TTSS-BTTT
*->CaakvYekCgkGgkpCCeg<-*
a + ++C+ +++CC++
gi|4721440 162 -AS-LLGRCTSSQLRCCRD 178
Defensin_beta: domain 1 of 1, from 166 to 177: score 4.2, E = 0.47
CS EECTSSTEEEEE
*->GtCsgpkvkCCr<-*
G+C +++CCr
gi|4721440 166 GRCTSSQLRCCR 177
F-box: domain 1 of 1, from 190 to 237: score 24.8, E = 4.4e-06
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP l l+++s+L+p+dl+++++VS++wr l+ +++ +
gi|4721440 190 DLAAALPRVLSLKVMSFLNPRDLCAAAQVSWHWRFLAEQVsRGGrGQ 236
CS H
l<-*
+
gi|4721440 237 R 237
Hpr_kinase_N: domain 1 of 1, from 199 to 208: score 1.2, E = 6.4
CS HHTTHHHHHH
*->LSfrletyln<-*
LS++++ +ln
gi|4721440 199 LSLKVMSFLN 208
VanY: domain 1 of 1, from 220 to 227: score 1.3, E = 5.3
CS XXXXXXXX
*->WHfRYvGl<-*
WH+R+ +
gi|4721440 220 WHWRFLAE 227
HemS: domain 1 of 1, from 222 to 232: score -0.2, E = 3.4
*->WReLAEslkal<-*
WR+LAE +
gi|4721440 222 WRFLAEQVSRG 232
RNA_pol_I_A49: domain 1 of 1, from 228 to 238: score 1.6, E = 1.6
*->elerRgRfqrR<-*
+++r+gR+qrR
gi|4721440 228 QVSRGGRGQRR 238
DDDD: domain 1 of 1, from 296 to 332: score -0.2, E = 7.5
*->ggrlaagkgslgitqvplrsvvatrSGAikPkPekmp<-*
+r+++ +++lg+ ++p + t +GA ++ P ++p
gi|4721440 296 ARRVPEEPQGLGQQRRPRGRRRRTQPGARLQGPGQTP 332
PetM: domain 1 of 1, from 342 to 350: score 2.9, E = 3.1
CS HCCCCC..S---
*->lLLKiQnAGseE<-*
+LL++Q A+ E
gi|4721440 342 VLLRLQ-AP--E 350
BCDHK_Adom3: domain 1 of 1, from 396 to 404: score 2.3, E = 2.1
*->tplSLrqll<-*
+plSLrqll
gi|4721440 396 SPLSLRQLL 404
DUF848: domain 1 of 1, from 396 to 412: score 0.4, E = 9.8
*->sasskKeLIksnLEaeV<-*
s+ s ++L++s+L a+V
gi|4721440 396 SPLSLRQLLLSGLKAAV 412
ABC_cobalt: domain 1 of 1, from 403 to 418: score 4.4, E = 1.9
*->liLsGalagivsfiyd<-*
l+LsG+ a++v+ +yd
gi|4721440 403 LLLSGLKAAVVAVLYD 418
NikR_C: domain 1 of 1, from 410 to 419: score 2.7, E = 5
CS EEEEEEEEET
*->vGtitlVYDH<-*
+++++++YDH
gi|4721440 410 AAVVAVLYDH 419
DUF2201: domain 1 of 1, from 416 to 422: score -0.9, E = 8.4
*->lYshRGT<-*
lY hRGT
gi|4721440 416 LYDHRGT 422
DUF570: domain 1 of 1, from 419 to 430: score -0.5, E = 9.2
*->PQGTpiAtLyli<-*
++GT+ A L ++
gi|4721440 419 HRGTQSALLAQV 430
CITED: domain 1 of 1, from 478 to 508: score 2.1, E = 0.54
CS XXXXX......XXXXXXXXXXXXXXXXXXXXXX
*->sqgrvpAppsqaGgpsslspaaGaqsPpglphv<-*
++g+v App+ +Gg + sp a a+ P +l v
gi|4721440 478 LSGWV-APPAEGGGIDIFSPLAAAAAP-ALRFV 508
Cas_Cas5a: domain 1 of 1, from 491 to 513: score 2.2, E = 4.3
*->FsvrvpeaSkvrpslplPPPtTL<-*
+ +++p a++++p+l++++ ++L
gi|4721440 491 IDIFSPLAAAAAPALRFVSESAL 513
Nefa_Nip30_N: domain 1 of 1, from 507 to 522: score 1.8, E = 8.6
*->FVSEaeldearksRqEeW<-*
FVSE++l + Rq eW
gi|4721440 507 FVSESALQGWC--RQAEW 522
DUF2113: domain 1 of 1, from 521 to 533: score 1.5, E = 5.1
*->EwieeaeelieEl<-*
Ew+eea e +++l
gi|4721440 521 EWMEEALEELRGL 533
MbeD_MobD: domain 1 of 1, from 575 to 590: score 4.6, E = 0.94
*->SqQVqsLseqvrRLSr<-*
S+ V+ L++ +rR+S+
gi|4721440 575 SRPVEFLADFLRRWSQ 590
Dpy-30: domain 1 of 1, from 577 to 590: score 3.7, E = 4.9
*->PiefLAeYLlknkn<-*
P+efLA++L + ++
gi|4721440 577 PVEFLADFLRRWSQ 590
EcoEI_R_C: domain 1 of 1, from 581 to 592: score 0.4, E = 8.1
*->ldeFlqrWsdae<-*
l++Fl+rWs+a+
gi|4721440 581 LADFLRRWSQAD 592
DUF533: domain 1 of 1, from 623 to 644: score 0.4, E = 9.2
*->laIDvdtfaEraYLdeLAaaLg<-*
la++++++ E +YL++L a L+
gi|4721440 623 LAARELQRSEEVYLQRLGAVLK 644
RhoGEF: domain 1 of 1, from 624 to 732: score 58.4, E = 6.1e-17
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
+++El+ +E++Y+++L ++++ y++pL +a s + +L++ +++ i
gi|4721440 624 AARELQRSEEVYLQRLGAVLKAYLEPLNAALDSGRTILSSSELHLIL 670
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
+ + +i+e++r+F Lear++ + +q++Gd++++l
gi|4721440 671 TPVTSILELNRTFQA-DLEARLQHW-----------GAEQCVGDVLMKL- 707
aeflqvYgeYcsnkpyAqelleklrqa<-*
+ l vY Y+sn+p A++ +++ +a
gi|4721440 708 CSNLRVYSTYLSNYPTAVDAVDR--VA 732
FixO: domain 1 of 1, from 635 to 644: score 1.3, E = 5.1
*->YLQvLGtlvd<-*
YLQ+LG ++
gi|4721440 635 YLQRLGAVLK 644
Maf: domain 1 of 1, from 636 to 647: score 2.4, E = 1.8
CS HTT---.....-
*->Lrelgislkdkl<-*
L++lg++lk++l
gi|4721440 636 LQRLGAVLKAYL 647
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