hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            49084200.fa
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Query sequence: gi|49084200|gb|AAT51181.1|
Accession:      [none]
Description:    PA0256 [synthetic construct]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
DUF1965         Domain of unknown function (DUF1965)      1.5        6.9   1
Ribosomal_S13   Ribosomal protein S13/S18                 1.7        7.2   1
W_rich_C        Tryptophan-rich Synechocystis species     0.8          8   1
OpcA_G6PD_assem Glucose-6-phosphate dehydrogenase sub     0.0        9.4   1
Glyco_transf_28 Glycosyltransferase family 28 N-termi     0.9        9.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Ribosomal_S13     1/1      46    55 ..     1    10 [.     1.7      7.2
DUF1965           1/1      50    68 ..    59    77 .]     1.5      6.9
W_rich_C          1/1      78   106 ..    79   109 .]     0.8        8
OpcA_G6PD_assem   1/1     122   137 ..   297   314 .]     0.0      9.4
Glyco_transf_28   1/1     181   190 ..     1    10 [.     0.9      9.5

Alignments of top-scoring domains:
Ribosomal_S13: domain 1 of 1, from 46 to 55: score 1.7, E = 7.2
                   *->Rilgtnidgn<-*
                      Ri gt++d++
  gi|4908420    46    RIYGTDVDDT    55

DUF1965: domain 1 of 1, from 50 to 68: score 1.5, E = 6.9
                CS    --TT--GGG--S--TTS--
                   *->vdvdnGdWavtdqnGdvpp<-*
                      +dvd+ +Wa+ d + +v+
  gi|4908420    50    TDVDDTPWAEGDERKEVLV    68

W_rich_C: domain 1 of 1, from 78 to 106: score 0.8, E = 8
                   *->SetPEfpanSsrtlaqellFgiDlNgDgLiG<-*
                      ++t  fp+  s+ l +   F  D+   gL G
  gi|4908420    78    TDT--FPTHASQVLSANFRFALDIVKGGLSG    106

OpcA_G6PD_assem: domain 1 of 1, from 122 to 137: score 0.0, E = 9.4
                   *->eELrgGRldpDelYeeAL<-*
                      +E r  R d    ++eA+
  gi|4908420   122    QEIR--RGDSGSAFAEAV    137

Glyco_transf_28: domain 1 of 1, from 181 to 190: score 0.9, E = 9.5
                CS    EEEEECSCHH
                   *->vllaggGTrG<-*
                      +l+a+ GT+G
  gi|4908420   181    ILIATHGTAG    190

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