hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 51597529.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|51597529|ref|YP_071720.1|
Accession: [none]
Description: pore forming RTX toxin family protein [Yersinia pseudotuberculosis IP 32953]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 41.7 3.4e-11 4
HemolysinCabind Hemolysin-type calcium-binding repeat 28.8 1.4e-07 3
Gtr1_RagA Gtr1/RagA G protein conserved region 5.3 0.31 1
DUF885 Bacterial protein of unknown function 3.7 0.4 1
GPI Glucose-6-phosphate isomerase (GPI) 4.9 0.4 1
ATP-synt ATP synthase 2.9 0.55 1
EHN Epoxide hydrolase N terminus 5.2 0.61 1
Glyco_hydro_26 Glycosyl hydrolase family 26 3.8 0.61 1
RecO Recombination protein O 3.6 0.84 1
SDH_beta Serine dehydratase beta chain 4.2 0.84 1
Peptidase_S55 SpoIVB peptidase S55 4.4 0.85 1
DUF1966 Domain of unknown function (DUF1966) 3.1 1 1
DUF1248 Protein of unknown function (DUF1248) 3.0 1.1 1
DUF1108 Protein of unknown function (DUF1108) 0.9 1.1 1
SIN1 Stress-activated map kinase interacti 2.2 1.1 1
Cw-hydrolase Cell wall-associated hydrolase 4.0 1.2 1
7tm_2 7 transmembrane receptor (Secretin fa 2.7 1.3 1
CIA30 Complex I intermediate-associated pro 3.1 1.3 1
DEAD_assoc DEAD/H associated 3.9 1.4 1
Orthopox_F7 Orthopoxvirus F7 protein 3.0 1.4 1
DUF975 Protein of unknown function (DUF975) 2.7 1.4 1
PRD PRD domain 4.4 1.6 1
DUF1767 Domain of unknown function (DUF1767) 3.8 1.6 1
eIF-4B Plant specific eukaryotic initiation -1.7 1.9 1
ERO1 Endoplasmic Reticulum Oxidoreductin 1 1.6 2 1
Pox_ser-thr_kin Poxvirus serine/threonine protein kin 2.1 2 1
GTP_cyclohydroI GTP cyclohydrolase I 2.8 2 1
PepSY_TM PepSY-associated TM helix 5.8 2 1
CaKB Calcium-activated potassium channel, 3.1 2 1
Nitr_red_assoc Conserved nitrate reductase-associate 1.7 2 1
dNK Deoxynucleoside kinase 2.9 2.2 1
DUF1814 Domain of unknown function (DUF1814) 2.0 2.3 1
KNOX2 KNOX2 domain 3.9 2.6 1
DUF2072 Zn-ribbon containing protein (DUF2072 1.6 2.8 1
DUF640 Protein of unknown function (DUF640) 2.0 2.9 1
UPF0149 Uncharacterised protein family (UPF01 2.3 3 1
DUF867 Protein of unknown function (DUF867) 2.2 3.1 1
DUF2002 Protein of unknown function (DUF2002) 1.9 3.1 1
MAM1 Monopolin complex protein MAM1 1.2 3.3 1
T-box T-box 1.1 3.4 1
DUF1973 Domain of unknown function (DUF1973) 0.0 3.7 1
PC_rep Proteasome/cyclosome repeat 3.6 3.7 1
Toprim_N DNA primase catalytic core, N-termina 2.7 3.8 1
Sas10_Utp3_C Sas10 C-terminal domain 3.5 3.9 1
LNS2 LNS2 (Lipin/Ned1/Smp2) 1.5 4 1
Mtr2 Nuclear pore RNA shuttling protein Mt 1.2 4 1
WaaY Lipopolysaccharide core biosynthesis 1.6 4.1 1
UPF0147 Uncharacterised protein family (UPF01 3.7 4.2 1
DUF2130 Uncharacterized protein conserved in 1.7 4.3 1
FerA FerA (NUC095) domain 3.7 4.7 1
CUT CUT domain 2.6 4.9 1
CaM_bdg_C0 Calmodulin-binding domain C0 of NMDA 2.5 5 1
RE_NgoPII NgoPII restriction endonuclease 1.5 5 1
Ninjurin Ninjurin 1.1 5.1 1
DUF1997 Protein of unknown function (DUF1997) 1.4 5.3 1
PSP1 PSP1 C-terminal conserved region 1.8 5.4 1
DUF2328 Uncharacterized protein conserved in 0.4 5.4 1
DUF2213 Uncharacterized protein conserved in 1.4 5.5 1
Herpes_PAP Herpesvirus polymerase accessory prot -1.0 5.7 1
Shigella_OspC Shigella flexneri OspC protein -0.1 5.7 1
Antimicrobial16 Double glycine cleavage site bacterio 2.4 5.8 1
GntP_permease GntP family permease 0.3 5.8 1
Formyl_trans_C Formyl transferase, C-terminal domain 2.0 5.8 1
YolD YolD-like protein 1.8 5.9 1
Phage_sheath_1 Phage tail sheath protein -0.9 6.1 1
DUF1048 Protein of unknown function (DUF1048) 2.5 6.2 1
Botulinum_HA-17 Clostridium botulinum HA-17 protein 0.6 6.4 1
Lipoprotein_17 Lipoprotein associated domain 2.5 6.4 1
GnRH Gonadotropin-releasing hormone 3.9 6.5 1
Cro Cro 2.2 6.6 1
PKI cAMP-dependent protein kinase inhibit 1.4 6.8 1
Gp49 Phage derived protein Gp49-like (DUF8 2.7 6.9 1
DUF1113 Protein of unknown function (DUF1113) 0.8 7.3 1
GnsAB GnsA/GnsB family 1.9 7.4 1
OstA_C Organic solvent tolerance protein -0.2 7.4 1
DUF2187 Uncharacterized protein conserved in 1.9 7.5 1
ERCC4 ERCC4 domain 1.9 7.8 1
RYDR_ITPR RIH domain 0.5 7.8 1
Queuosine_synth Queuosine biosynthesis protein 0.3 8 1
Crp Bacterial regulatory proteins, crp fa 2.8 8.2 1
T5orf172 T5orf172 domain 1.5 8.4 1
Peptidase_U57 YabG peptidase U57 0.2 8.4 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.6 8.5 1
UspB Universal stress protein B (UspB) 1.6 8.5 1
Phage_integr_N Phage integrase, N-terminal SAM-like 1.6 8.6 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 1.7 8.8 1
Taxilin Myosin-like coiled-coil protein -0.5 8.9 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
DUF1881 Protein of unkown function (DUF1881) 0.4 9 1
DUF2599 Protein of unknown function (DUF2599) 0.0 9 1
TmoB Toluene-4-monooxygenase system protei 0.8 9.1 1
aPHC Alkaline phytoceramidase (aPHC) -0.6 9.4 1
SIS SIS domain 1.6 9.6 1
SARS_lipid_bind SARS lipid binding protein 0.7 9.6 1
DUF464 Protein of unknown function (DUF464) 0.4 9.7 1
HTS Homoserine O-succinyltransferase -1.6 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1973 1/1 2 23 .. 53 77 .. 0.0 3.7
CaKB 1/1 17 28 .. 190 201 .] 3.1 2
T5orf172 1/1 30 54 .. 61 92 .] 1.5 8.4
CaM_bdg_C0 1/1 140 147 .. 22 29 .] 2.5 5
PRD 1/1 163 194 .. 1 31 [. 4.4 1.6
DUF2187 1/1 189 197 .. 49 57 .] 1.9 7.5
GPI 1/1 200 231 .. 156 190 .] 4.9 0.4
Crp 1/1 236 246 .. 23 33 .] 2.8 8.2
Taxilin 1/1 237 244 .. 309 316 .] -0.5 8.9
Botulinum_HA-17 1/1 278 286 .. 1 9 [. 0.6 6.4
DUF1997 1/1 289 304 .. 175 189 .] 1.4 5.3
Pox_ser-thr_kin 1/1 317 349 .. 37 70 .. 2.1 2
HTS 1/1 320 334 .. 1 15 [. -1.6 9.7
KNOX2 1/1 336 349 .. 43 56 .] 3.9 2.6
ERO1 1/1 338 352 .. 1 21 [. 1.6 2
EHN 1/1 348 367 .. 1 20 [. 5.2 0.61
dNK 1/1 349 376 .. 143 170 .] 2.9 2.2
MAM1 1/1 386 399 .. 400 413 .] 1.2 3.3
LNS2 1/1 445 458 .. 1 11 [. 1.5 4
Cro 1/1 463 473 .. 37 47 .. 2.2 6.6
DUF975 1/1 468 482 .. 1 18 [. 2.7 1.4
DUF1966 1/1 507 523 .. 1 17 [. 3.1 1
WaaY 1/1 530 547 .. 1 18 [. 1.6 4.1
Queuosine_synth 1/1 534 543 .. 1 10 [. 0.3 8
DEAD_assoc 1/1 546 577 .. 48 85 .. 3.9 1.4
Gtr1_RagA 1/1 561 589 .. 215 238 .] 5.3 0.31
Peptidase_S55 1/1 610 630 .. 109 129 .. 4.4 0.85
DUF1048 1/1 629 646 .. 86 105 .] 2.5 6.2
7tm_2 1/1 665 676 .. 282 293 .] 2.7 1.3
DUF1881 1/1 737 757 .. 36 58 .. 0.4 9
GnRH 1/1 738 747 .. 1 10 [] 3.9 6.5
ERCC4 1/1 771 785 .. 130 144 .] 1.9 7.8
DUF464 1/1 772 780 .. 100 108 .] 0.4 9.7
YolD 1/1 835 854 .. 74 93 .] 1.8 5.9
SARS_lipid_bind 1/1 908 932 .. 73 97 .] 0.7 9.6
SIN1 1/1 957 986 .. 501 530 .. 2.2 1.1
DUF640 1/1 962 973 .. 128 139 .] 2.0 2.9
ATP-synt 1/1 967 977 .. 1 13 [. 2.9 0.55
FerA 1/1 974 988 .. 17 32 .. 3.7 4.7
Mqo 1/1 1031 1046 .. 211 227 .. -0.6 8.5
SPC25 1/1 1060 1076 .. 1 18 [. 0.3 8.9
T-box 1/1 1143 1152 .. 172 181 .. 1.1 3.4
Formyl_trans_C 1/1 1151 1161 .. 1 11 [. 2.0 5.8
Phage_sheath_1 1/1 1185 1200 .. 681 696 .] -0.9 6.1
Phage_integr_N 1/1 1191 1201 .. 1 11 [. 1.6 8.6
Sas10_Utp3_C 1/1 1239 1250 .. 67 78 .] 3.5 3.9
aPHC 1/1 1286 1293 .. 1 8 [. -0.6 9.4
DUF2213 1/1 1294 1304 .. 1 11 [. 1.4 5.5
DUF2130 1/1 1297 1342 .. 245 290 .] 1.7 4.3
DUF1113 1/1 1317 1342 .. 225 252 .] 0.8 7.3
RE_NgoPII 1/1 1386 1406 .. 251 273 .] 1.5 5
GnsAB 1/1 1465 1479 .. 1 15 [. 1.9 7.4
eIF-4B 1/1 1482 1491 .. 1 12 [. -1.7 1.9
DUF867 1/1 1580 1594 .. 1 15 [. 2.2 3.1
GntP_permease 1/1 1602 1622 .. 444 465 .] 0.3 5.8
PC_rep 1/1 1608 1618 .. 1 11 [. 3.6 3.7
DUF2328 1/1 1616 1638 .. 166 188 .] 0.4 5.4
PepSY_TM 1/1 1621 1644 .. 1 34 [] 5.8 2
UPF0147 1/1 1645 1657 .. 75 87 .] 3.7 4.2
Orthopox_F7 1/1 1685 1700 .. 67 82 .] 3.0 1.4
Cw-hydrolase 1/1 1695 1733 .. 1 39 [. 4.0 1.2
Herpes_PAP 1/1 1802 1812 .. 106 116 .. -1.0 5.7
Nitr_red_assoc 1/1 1804 1814 .. 136 146 .] 1.7 2
PKI 1/1 1814 1827 .. 1 14 [. 1.4 6.8
FG-GAP 1/4 1819 1844 .. 1 36 [] 8.8 0.14
Antimicrobial16 1/1 1891 1906 .. 27 42 .] 2.4 5.8
FG-GAP 2/4 1905 1935 .. 1 36 [] 9.4 0.096
TmoB 1/1 1907 1923 .. 1 19 [. 0.8 9.1
Gp49 1/1 1916 1928 .. 1 13 [. 2.7 6.9
FG-GAP 3/4 1975 2000 .. 5 36 .] 12.6 0.011
FG-GAP 4/4 2029 2056 .. 1 36 [] 10.9 0.033
DUF2072 1/1 2064 2078 .. 137 151 .] 1.6 2.8
SIS 1/1 2153 2166 .. 1 14 [. 1.6 9.6
HemolysinCabind 1/3 2191 2201 .. 8 18 .] 7.6 0.4
DUF1767 1/1 2211 2226 .. 90 106 .] 3.8 1.6
DUF2002 1/1 2259 2271 .. 104 116 .] 1.9 3.1
HemolysinCabind 2/3 2262 2279 .. 1 18 [] 14.9 0.0023
U3_assoc_6 1/1 2295 2310 .. 73 88 .] 1.7 8.8
Lipoprotein_17 1/1 2327 2342 .. 1 16 [. 2.5 6.4
DUF1248 1/1 2340 2350 .. 1 11 [. 3.0 1.1
OstA_C 1/1 2344 2371 .. 416 446 .] -0.2 7.4
Ninjurin 1/1 2361 2379 .. 138 156 .. 1.1 5.1
Shigella_OspC 1/1 2366 2384 .. 1 20 [. -0.1 5.7
Mtr2 1/1 2438 2447 .. 1 10 [. 1.2 4
RYDR_ITPR 1/1 2546 2572 .. 198 229 .] 0.5 7.8
UspB 1/1 2573 2586 .. 60 73 .. 1.6 8.5
HemolysinCabind 3/3 2662 2678 .. 1 18 [] 6.3 0.96
SDH_beta 1/1 2679 2695 .. 143 159 .] 4.2 0.84
GTP_cyclohydroI 1/1 2749 2765 .. 1 17 [. 2.8 2
UPF0149 1/1 2767 2783 .. 1 19 [. 2.3 3
DUF885 1/1 2840 2852 .. 568 580 .] 3.7 0.4
DUF2599 1/1 2865 2872 .. 1 9 [. 0.0 9
CUT 1/1 2871 2885 .. 6 20 .. 2.6 4.9
Toprim_N 1/1 2888 2923 .. 47 81 .. 2.7 3.8
PSP1 1/1 2915 2928 .. 83 96 .] 1.8 5.4
DUF1108 1/1 2944 2951 .. 79 86 .] 0.9 1.1
CIA30 1/1 2957 2968 .. 199 210 .] 3.1 1.3
Peptidase_U57 1/1 2972 2983 .. 147 158 .. 0.2 8.4
RecO 1/1 2989 3022 .. 226 259 .] 3.6 0.84
DUF1814 1/1 2991 3069 .. 238 299 .] 2.0 2.3
Glyco_hydro_26 1/1 3044 3056 .. 347 359 .] 3.8 0.61
Alignments of top-scoring domains:
DUF1973: domain 1 of 1, from 2 to 23: score 0.0, E = 3.7
*->PsGkkyttsDFisDatsiksarLqI<-*
P+G ++ + F ++++s +s rL+I
gi|5159752 2 PNGNEMAG--FYINKLS-LSQRLSI 23
CaKB: domain 1 of 1, from 17 to 28: score 3.1, E = 2
CS XXXXXXXXXXXX
*->ltQyLSlLcerr<-*
l+Q LS+L+e +
gi|5159752 17 LSQRLSILSETY 28
T5orf172: domain 1 of 1, from 30 to 54: score 1.5, E = 8.4
*->RvnkvnnrkdGtyPkEfFkvpleeikevikei<-*
R+nk+n+ kE Fk ++ +i+ ++k++
gi|5159752 30 RINKNNK-------KEKFKYSYADIEMIKKRF 54
CaM_bdg_C0: domain 1 of 1, from 140 to 147: score 2.5, E = 5
*->DkWRgNIe<-*
D+WRg ++
gi|5159752 140 DVWRGDLL 147
PRD: domain 1 of 1, from 163 to 194: score 4.4, E = 1.6
CS HHHHHHHHHHHTS-- .TTTCHHHHHHHHHHH
*->eelleeiekklqikf.ketdelyqrLilHlac<-*
+++ ++ ++l +++ +++d+ ++ Li Hl++
gi|5159752 163 LRFMIDMAESLKLNIiNPSDKAMVDLINHLRY 194
DUF2187: domain 1 of 1, from 189 to 197: score 1.9, E = 7.5
*->VnHKnYkii<-*
+nH +Yk i
gi|5159752 189 INHLRYKMI 197
GPI: domain 1 of 1, from 200 to 231: score 4.9, E = 0.4
*->agsdYdtIakagGmayyiiedGeqlrerknddypr<-*
a+s+Y t+ +G y++ G + r+n++ ++
gi|5159752 200 ASSFYATYSAERGGTVYLSSPG---GLRINNYFWN 231
Crp: domain 1 of 1, from 236 to 246: score 2.8, E = 8.2
*->lLtrLrekgLI<-*
+L L+++gLI
gi|5159752 236 VLRALQKQGLI 246
Taxilin: domain 1 of 1, from 237 to 244: score -0.5, E = 8.9
*->CRaLQaER<-*
+RaLQ+++
gi|5159752 237 LRALQKQG 244
Botulinum_HA-17: domain 1 of 1, from 278 to 286: score 0.6, E = 6.4
*->MsaERTFLP<-*
M+aE FLP
gi|5159752 278 MTAEYQFLP 286
DUF1997: domain 1 of 1, from 289 to 304: score 1.4, E = 5.3
*->ltrqLleD.Fhawiae<-*
l+++Ll D +++w +e
gi|5159752 289 LQEKLLVDiYQQWLDE 304
Pox_ser-thr_kin: domain 1 of 1, from 317 to 349: score 2.1, E = 2
*->vfsqidlnqnWsPsIkllryFknfsketldriae<-*
++ id+ n +P++ llryF ++ e ld i+e
gi|5159752 317 IINTIDIDRN-APEVELLRYFLSKIHEQLDEITE 349
HTS: domain 1 of 1, from 320 to 334: score -1.6, E = 9.7
*->PIkIPddLPAveiLe<-*
+I I+++ P+ve+L+
gi|5159752 320 TIDIDRNAPEVELLR 334
KNOX2: domain 1 of 1, from 336 to 349: score 3.9, E = 2.6
*->FLnkIEtQLqnLck<-*
FL+kI+ QL++++
gi|5159752 336 FLSKIHEQLDEITE 349
ERO1: domain 1 of 1, from 338 to 352: score 1.6, E = 2
CS HCCHHHHHHHHCSCCCCEEEE
*->ekIrplLqsLtktdFFRyfKV<-*
+kI+++L+++t+ +KV
gi|5159752 338 SKIHEQLDEITE------YKV 352
EHN: domain 1 of 1, from 348 to 367: score 5.2, E = 0.61
*->rPFsisvpdedlddLkrrLr<-*
+++++ + +e++d +k++++
gi|5159752 348 TEYKVLIEAERIDFIKKKIA 367
dNK: domain 1 of 1, from 349 to 376: score 2.9, E = 2.2
CS CCGGGS-EEEEE-SS-CCC.HHHHHHHH
*->spvlvidgdklDfvedeediknkineil<-*
++++ i+++++Df+ +++++ i+++l
gi|5159752 349 EYKVLIEAERIDFIKKKIAVGSEIESWL 376
MAM1: domain 1 of 1, from 386 to 399: score 1.2, E = 3.3
*->sRKlfdEqllkrkk<-*
+RK++ E ll++++
gi|5159752 386 ERKVILENLLQKES 399
LNS2: domain 1 of 1, from 445 to 458: score 1.5, E = 4
*->VViSD...IDGTIT<-*
++iSD++ +DGT+T
gi|5159752 445 IIISDrslVDGTLT 458
Cro: domain 1 of 1, from 463 to 473: score 2.2, E = 6.6
CS TT-EEEEEEET
*->AGRkIeVtvke<-*
AGRkI+++v++
gi|5159752 463 AGRKIMIKVDA 473
DUF975: domain 1 of 1, from 468 to 482: score 2.7, E = 1.4
*->MeqNikvdysrsElKskA<-*
M ikvd +r +lK++A
gi|5159752 468 M---IKVDANRNQLKQMA 482
DUF1966: domain 1 of 1, from 507 to 523: score 3.1, E = 1
*->piysDsstiAmRKGpeG<-*
+i+s++ ++A RKG G
gi|5159752 507 VIMSGDAVLAERKGDKG 523
WaaY: domain 1 of 1, from 530 to 547: score 1.6, E = 4.1
*->MItekkikglsvFvkdNd<-*
MI + k ++ F k Nd
gi|5159752 530 MIEKVKLSEFDYFLKSND 547
Queuosine_synth: domain 1 of 1, from 534 to 543: score 0.3, E = 8
*->MklsdFDYeL<-*
kls+FDY L
gi|5159752 534 VKLSEFDYFL 543
DEAD_assoc: domain 1 of 1, from 546 to 577: score 3.9, E = 1.4
*->lnvrvavtDyGfvLrlpkrvgdavdiaellarlldpen<-*
+++++ ++D+GfvL+l +d++d+++++ ++p n
gi|5159752 546 NDLGIKINDNGFVLYLI---SDPEDSRDVI---INPNN 577
Gtr1_RagA: domain 1 of 1, from 561 to 589: score 5.3, E = 0.31
*->vreDgneksgli.....lyNiknarkaie<-*
+++D++++ ++i +++++yN k+ + +ie
gi|5159752 561 LISDPEDSRDVIinpnnDYNLKSIKDFIE 589
Peptidase_S55: domain 1 of 1, from 610 to 630: score 4.4, E = 0.85
*->NKEFlvknisnkaipValrne<-*
NKE ++++ + +++ Va+r+e
gi|5159752 610 NKECIFAHNERETYQVAYRDE 630
DUF1048: domain 1 of 1, from 629 to 646: score 2.5, E = 6.2
*->dnktktWrDKyRekLNdsia<-*
d++t W+ y+ +L d+i+
gi|5159752 629 DEGT--WVLLYKKDLSDQIK 646
7tm_2: domain 1 of 1, from 665 to 676: score 2.7, E = 1.3
CS ------------
*->VavlYCFLNgEV<-*
Va++ C+LN+ V
gi|5159752 665 VALILCLLNKHV 676
DUF1881: domain 1 of 1, from 737 to 757: score 0.4, E = 9
*->DkfrSvkvGassKVniWrHNeiD<-*
++f+S++++++ n W++ iD
gi|5159752 737 TRFFSYDIKPGMYMNTWDK--ID 757
GnRH: domain 1 of 1, from 738 to 747: score 3.9, E = 6.5
*->qHwshgwkPG<-*
+s++ kPG
gi|5159752 738 RFFSYDIKPG 747
ERCC4: domain 1 of 1, from 771 to 785: score 1.9, E = 7.8
CS HH....HHH-SEEEE
*->kraYPspvlLvEgdr<-*
k++YP+++ L+++d
gi|5159752 771 KNQYPQFIVLLQDDS 785
DUF464: domain 1 of 1, from 772 to 780: score 0.4, E = 9.7
*->eqYpeyIkv<-*
+qYp++I +
gi|5159752 772 NQYPQFIVL 780
YolD: domain 1 of 1, from 835 to 854: score 1.8, E = 5.9
*->itdafddntiklkledIidi<-*
+t+ +d + +++ +Iidi
gi|5159752 835 VTHGAPDGLYSFSIANIIDI 854
SARS_lipid_bind: domain 1 of 1, from 908 to 932: score 0.7, E = 9.6
*->PivvkmtKLAttEELPDEFvvvtaK<-*
Pi + tK+ E P E vv
gi|5159752 908 PILAYTTKVGVSVEYPGELVVFNSE 932
SIN1: domain 1 of 1, from 957 to 986: score 2.2, E = 1.1
*->LDGNPtLELVKKKVRDKKGStqqLPtSSPq<-*
+DG P +EL K VRDK S qL S q
gi|5159752 957 IDGIPAVELLLKDVRDKIKSVDQLIESYSQ 986
DUF640: domain 1 of 1, from 962 to 973: score 2.0, E = 2.9
*->AVRlYLRevRds<-*
AV l L++vRd+
gi|5159752 962 AVELLLKDVRDK 973
ATP-synt: domain 1 of 1, from 967 to 977: score 2.9, E = 0.55
CS --HHHHHHHHHHH
*->AsLKeIrdRIkSV<-*
LK++rd+IkSV
gi|5159752 967 --LKDVRDKIKSV 977
FerA: domain 1 of 1, from 974 to 988: score 3.7, E = 4.7
*->lklLDQlIeDcssfpL<-*
+k++DQlIe+ s+ +L
gi|5159752 974 IKSVDQLIESYSQ-YL 988
Mqo: domain 1 of 1, from 1031 to 1046: score -0.6, E = 8.5
*->RnsDGtWtVtvkdlnng<-*
RnsD+ W+++v+++ +g
gi|5159752 1031 RNSDN-WQLVVANNATG 1046
SPC25: domain 1 of 1, from 1060 to 1076: score 0.3, E = 8.9
*->dkpVKviNkwDgpavKna<-*
VKv N wD pa+ n+
gi|5159752 1060 PDIVKV-NEWDLPAIANI 1076
T-box: domain 1 of 1, from 1143 to 1152: score 1.1, E = 3.4
*->QNeeITkLKI<-*
+Ne +TkLKI
gi|5159752 1143 HNELVTKLKI 1152
Formyl_trans_C: domain 1 of 1, from 1151 to 1161: score 2.0, E = 5.8
*->kitkedgrIDW<-*
ki +e g+I W
gi|5159752 1151 KIQPENGKIRW 1161
Phage_sheath_1: domain 1 of 1, from 1185 to 1200: score -0.9, E = 6.1
*->EyitFrfviTstylvd<-*
E +t r+ ++s+yl++
gi|5159752 1185 EQLTARLNQFSDYLQT 1200
Phage_integr_N: domain 1 of 1, from 1191 to 1201: score 1.6, E = 8.6
CS HHHHHHHHHHT
*->leqFleyLsle<-*
l+qF++yL+ e
gi|5159752 1191 LNQFSDYLQTE 1201
Sas10_Utp3_C: domain 1 of 1, from 1239 to 1250: score 3.5, E = 3.9
*->GIkknvvKSvKl<-*
GI++nv+ S+K
gi|5159752 1239 GIRTNVSASTKA 1250
aPHC: domain 1 of 1, from 1286 to 1293: score -0.6, E = 9.4
*->pgrwgeqt<-*
++rwge+t
gi|5159752 1286 WNRWGEIT 1293
DUF2213: domain 1 of 1, from 1294 to 1304: score 1.4, E = 5.5
*->stRsitadGfL<-*
++R+++++G+L
gi|5159752 1294 TERKKDINGRL 1304
DUF2130: domain 1 of 1, from 1297 to 1342: score 1.7, E = 4.3
*->dKawkklekqieavldstlnlygannkiagktikkltklnltmkek<
+K + + ++i+ +ld+ + ++ n+i+ k + kl+ + +++++k
gi|5159752 1297 KKDINGRLNNIDSLLDNLITRQLSVNQINKKQQRKLAEIFPQLTDK 1342
-*
gi|5159752 - -
DUF1113: domain 1 of 1, from 1317 to 1342: score 0.8, E = 7.3
*->kelllfllnfnqrRllknsFpklkyslk<-*
++l+ +++n+ q+R l+++Fp l k
gi|5159752 1317 RQLSVNQINKKQQRKLAEIFPQLT--DK 1342
RE_NgoPII: domain 1 of 1, from 1386 to 1406: score 1.5, E = 5
*->tDkleilaedNkkleikDvrIKn<-*
tD+ +i + d + DvrIK+
gi|5159752 1386 TDRWRITETDG--NTLQDVRIKS 1406
GnsAB: domain 1 of 1, from 1465 to 1479: score 1.9, E = 7.4
*->MniEelkkkaEeeIa<-*
M+ +l++k EeeI+
gi|5159752 1465 MSNGDLTEKQEEEIQ 1479
eIF-4B: domain 1 of 1, from 1482 to 1491: score -1.7, E = 1.9
*->MsKpWGGiGiGA<-*
++ +WGGi GA
gi|5159752 1482 LAMAWGGI--GA 1491
DUF867: domain 1 of 1, from 1580 to 1594: score 2.2, E = 3.1
*->YssFeELkenetegk<-*
Y+ F+ L+ ++++++
gi|5159752 1580 YHAFSQLATETDPHV 1594
GntP_permease: domain 1 of 1, from 1602 to 1622: score 0.3, E = 5.8
*->TvleTIlSvvGLifvLiLlsLv<-*
+v +TI++++GL++ + + +++
gi|5159752 1602 GVFSTINATIGLGVAF-AMAMG 1622
PC_rep: domain 1 of 1, from 1608 to 1618: score 3.6, E = 3.7
*->gAilaLGliha<-*
+A+++LG+++a
gi|5159752 1608 NATIGLGVAFA 1618
DUF2328: domain 1 of 1, from 1616 to 1638: score 0.4, E = 5.4
*->lLAreaGgtisveiteeavvlsa<-*
+ A ++Ggt + +++++++ l++
gi|5159752 1616 AFAMAMGGTAATAAGPAGIALAF 1638
PepSY_TM: domain 1 of 1, from 1621 to 1644: score 5.8, E = 2
*->lgdlHrgrfggvallglllglllllllltGlvlw<-*
+g+ ++ ++g+++++l++t+++++
gi|5159752 1621 MGG----------TAATAAGPAGIALAFTMIIVG 1644
UPF0147: domain 1 of 1, from 1645 to 1657: score 3.7, E = 4.2
*->dIWeiiSeLErik<-*
dI++ +S+ Eri+
gi|5159752 1645 DIYSAVSQIERIR 1657
Orthopox_F7: domain 1 of 1, from 1685 to 1700: score 3.0, E = 1.4
*->LDiKRRYRHaiEsvYF<-*
LD + RY ++EsvY
gi|5159752 1685 LDNQIRYNQTMESVYQ 1700
Cw-hydrolase: domain 1 of 1, from 1695 to 1733: score 4.0, E = 1.2
*->mlsalilselsypAllLaeqqvhqrfvhpgPLvLkaapl<-*
m s+ + + y+All +q v+ f g vLka p+
gi|5159752 1695 MESVYQRQRDYYEALLASKQGVDTLFYSRGEAVLKAIPF 1733
Herpes_PAP: domain 1 of 1, from 1802 to 1812: score -1.0, E = 5.7
CS EEHHHHHHHHH
*->vqaKNLqQALs<-*
+q KNL+QA+s
gi|5159752 1802 LQNKNLHQAFS 1812
Nitr_red_assoc: domain 1 of 1, from 1804 to 1814: score 1.7, E = 2
*->NhNFlpAlqEF<-*
N+N+ A++E+
gi|5159752 1804 NKNLHQAFSEL 1814
PKI: domain 1 of 1, from 1814 to 1827: score 1.4, E = 6.8
*->tDVEStyadFisSg<-*
D+ Sty+ Fi S+
gi|5159752 1814 LDIDSTYSPFILSA 1827
FG-GAP: domain 1 of 4, from 1819 to 1844: score 8.8, E = 0.14
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s+ + D++++G++D++v +++ +
gi|5159752 1819 TYSPFILSaDVDRNGLNDFIV-------INeK-----Y 1844
Antimicrobial16: domain 1 of 1, from 1891 to 1906: score 2.4, E = 5.8
*->WEelLyeliliKfkit<-*
WE l + + + Kf+
gi|5159752 1891 WEKLFHAIEVDKFNEV 1906
FG-GAP: domain 2 of 4, from 1905 to 1935: score 9.4, E = 0.096
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+nGD +lv+ +++d+ ++y++
gi|5159752 1905 EVVFPVLGDFNGDNVFELVI-------FHdDkMTTYHY 1935
TmoB: domain 1 of 1, from 1907 to 1923: score 0.8, E = 9.1
CS --EEEEEEEETT-SBEEEE
*->MAlFPiisnFegDFVlQLV<-*
FP+ + F gD V LV
gi|5159752 1907 --VFPVLGDFNGDNVFELV 1923
Gp49: domain 1 of 1, from 1916 to 1928: score 2.7, E = 6.9
*->GeGvfELRidygp<-*
G+ vfEL i +++
gi|5159752 1916 GDNVFELVIFHDD 1928
FG-GAP: domain 3 of 4, from 1975 to 2000: score 12.6, E = 0.011
CS EEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->vaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++gD+n+DG++D+++ +++g +l
gi|5159752 1975 SLVGDINNDGFDDILL-------LNkSGDMLHL 2000
FG-GAP: domain 4 of 4, from 2029 to 2056: score 10.9, E = 0.033
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ s++ ++Dln DG Dlv+ + +d + ++
gi|5159752 2029 HRSQLQLTDLNKDGGLDLVI-------ILnD--GIYY 2056
DUF2072: domain 1 of 1, from 2064 to 2078: score 1.6, E = 2.8
*->EGtYviDLpSalkkk<-*
+G Y+ D pS+++k
gi|5159752 2064 DGEYHFDTPSMVNKI 2078
SIS: domain 1 of 1, from 2153 to 2166: score 1.6, E = 9.6
CS HHHHSEEEEEE-CH
*->klakakrIyliGaG<-*
++k+k+I++iG+G
gi|5159752 2153 GYHKKKNIFTIGSG 2166
HemolysinCabind: domain 1 of 3, from 2191 to 2201: score 7.6, E = 0.4
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+GnDt
gi|5159752 2191 ILSGGEGNDTV 2201
DUF1767: domain 1 of 1, from 2211 to 2226: score 3.8, E = 1.6
*->vnsirDIsqPlynqlLs<-*
++si+DIs +y+q+ +
gi|5159752 2211 IDSIIDISKGYYSQV-N 2226
DUF2002: domain 1 of 1, from 2259 to 2271: score 1.9, E = 3.1
*->ryLnrlFGDEKtd<-*
+yLn++ GD+K
gi|5159752 2259 NYLNGMGGDDKIW 2271
HemolysinCabind: domain 2 of 3, from 2262 to 2279: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G+D + G++GnD+l
gi|5159752 2262 NGMGGDDKIWGNGGNDLL 2279
U3_assoc_6: domain 1 of 1, from 2295 to 2310: score 1.7, E = 8.8
*->kkfknsisdysiqrrI<-*
+++ +s+++ s+q rI
gi|5159752 2295 YHILKSTHEKSLQIRI 2310
Lipoprotein_17: domain 1 of 1, from 2327 to 2342: score 2.5, E = 6.4
*->eLeeeinkIssielke<-*
Le ++n+I+siel +
gi|5159752 2327 FLEHKLNQIKSIELDN 2342
DUF1248: domain 1 of 1, from 2340 to 2350: score 3.0, E = 1.1
*->rddVDvviNPd<-*
+d++Dv+iN++
gi|5159752 2340 LDNIDVLININ 2350
OstA_C: domain 1 of 1, from 2344 to 2371: score -0.2, E = 7.4
*->ddpdyntatnsgqdkisqiglsaqwplarnW<-*
d +++++++n++ + qi+l++ +++++n
gi|5159752 2344 DVLININNDNGF---MTQIRLVGVYNINNNQ 2371
Ninjurin: domain 1 of 1, from 2361 to 2379: score 1.1, E = 5.1
*->figrLnlnrvedqrrlnrl<-*
+ g +n+n++++q ln++
gi|5159752 2361 LVGVYNINNNQKQQVLNFT 2379
Shigella_OspC: domain 1 of 1, from 2366 to 2384: score -0.1, E = 5.7
*->vEisnHqkklPLnkkHHtvD<-*
i n qk+ Ln + tvD
gi|5159752 2366 -NINNNQKQQVLNFTIQTVD 2384
Mtr2: domain 1 of 1, from 2438 to 2447: score 1.2, E = 4
CS EECCTT....
*->ngqtQqQVTH<-*
ng +QqQVTH
gi|5159752 2438 NGYQQQQVTH 2447
RYDR_ITPR: domain 1 of 1, from 2546 to 2572: score 0.5, E = 7.8
CS XXXXXXXXXXX.....XXXXXXXXXXXXXXXX
*->lickevlnpGesVEENaDlLiqtnlraseasl<-*
l+c +v++++ DlL+++++ ++
gi|5159752 2546 LLC-DVIVERS----DDDLLLRYRDQPEKHQS 2572
UspB: domain 1 of 1, from 2573 to 2586: score 1.6, E = 8.5
*->vRLfhYIksqeYlh<-*
+RL++Y + ++Y h
gi|5159752 2573 IRLVNYMNDERYRH 2586
HemolysinCabind: domain 3 of 3, from 2662 to 2678: score 6.3, E = 0.96
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G L Gg+G+Dt+
gi|5159752 2662 RGHEGT-MLKGGGGDDTY 2678
SDH_beta: domain 1 of 1, from 2679 to 2695: score 4.2, E = 0.84
*->YySiGGGfIvdeehfGl<-*
YyS G G+I + +++Gl
gi|5159752 2679 YYSAGSGAINIADTSGL 2695
GTP_cyclohydroI: domain 1 of 1, from 2749 to 2765: score 2.8, E = 2
*->emVkvtdpeFtSlCPhh<-*
e ++t++e++SlCP +
gi|5159752 2749 EGSQITFDELFSLCPYS 2765
UPF0149: domain 1 of 1, from 2767 to 2783: score 2.3, E = 3
CS ---HHHHHHHHHHTT-S--
*->lpaYsalsqeLkqaGlgvs<-*
+Y l q+Lk++Gl+++
gi|5159752 2767 --EYYQLCQQLKSMGLSLT 2783
DUF885: domain 1 of 1, from 2840 to 2852: score 3.7, E = 0.4
*->PLdvLEqkvdrwI<-*
PL++ Eqk+d+++
gi|5159752 2840 PLPLIEQKIDAFF 2852
DUF2599: domain 1 of 1, from 2865 to 2872: score 0.0, E = 9
*->IdhatWaqw<-*
+h+tW+q+
gi|5159752 2865 -EHVTWIQR 2872
CUT: domain 1 of 1, from 2871 to 2885: score 2.6, E = 4.9
CS XXX---SHHHHHHHH
*->mneeldTaeIarrVk<-*
+ ee dT++Ia++Vk
gi|5159752 2871 QREEFDTVDIAKWVK 2885
Toprim_N: domain 1 of 1, from 2888 to 2923: score 2.7, E = 3.8
CS HHHHHT-HHHHHTTT-EE-SST..T--EET TTTEE
*->fLkkkgfdeelLleaGLlsknenggkfyDr.FrnRi<-*
+L++++ + lL+++GLl+++ +k D++F+nRi
gi|5159752 2888 HLRSQNEINYLLEQLGLLKESPLSDKALDFtFKNRI 2923
PSP1: domain 1 of 1, from 2915 to 2928: score 1.8, E = 5.4
*->LakvfktRIELRQI<-*
L ++fk RI L+Q
gi|5159752 2915 LDFTFKNRIDLAQA 2928
DUF1108: domain 1 of 1, from 2944 to 2951: score 0.9, E = 1.1
*->LINLVMkW<-*
LINL Mk
gi|5159752 2944 LINLAMKY 2951
CIA30: domain 1 of 1, from 2957 to 2968: score 3.1, E = 1.3
*->GpFeLeidsIka<-*
G+FeL+i I++
gi|5159752 2957 GHFELLISNIQV 2968
Peptidase_U57: domain 1 of 1, from 2972 to 2983: score 0.2, E = 8.4
*->vGvhvsEkEqPE<-*
+Gv+vsE EqP+
gi|5159752 2972 YGVVVSESEQPL 2983
RecO: domain 1 of 1, from 2989 to 3022: score 3.6, E = 0.84
*->akLkplldskleesslvERlyelsrsflprrelL<-*
+ L +++ +k +++ v Rl e + sf++ +lL
gi|5159752 2989 IDLRQYFNQKNLTKDHVGRLAEHDMSFDELTLLL 3022
DUF1814: domain 1 of 1, from 2991 to 3069: score 2.0, E = 2.3
*->ikrtflerllalhkflfysrkdedfdgil.aeaa.gllllapwlefl
++ f +++l++++ +++++d fd+ + ++ + ++a+++++
gi|5159752 2991 LRQYFNQKNLTKDHVGRLAEHDMSFDELTlLLDKnIPIEQAFTQRLQ 3037
kei.la..............ltedyeeflesl<-*
++++++ ++++ ++++ + +d++ ++e +
gi|5159752 3038 TQLgPLklfndervlnqgdiFDQDISQLAEAM 3069
Glyco_hydro_26: domain 1 of 1, from 3044 to 3056: score 3.8, E = 0.61
CS H..........ST
*->alynsswVlnkDE<-*
+l+n+++Vln +
gi|5159752 3044 KLFNDERVLNQGD 3056
//