hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            55959737.fa
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Query sequence: gi|55959737|emb|CAI14575.1|
Accession:      [none]
Description:    nasal embryonic LHRH factor [Homo sapiens]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Orthopox_B11R   Orthopoxvirus B11R protein                3.4        2.9   1
TIR             TIR domain                                0.9        5.4   1
IMPDH           IMP dehydrogenase / GMP reductase dom     0.6          6   1
Orthopox_N1     Orthopoxvirus N1 protein                  0.7        6.4   1
IFRD            Interferon-related developmental regu    -0.2        6.5   1
c-SKI_SMAD_bind c-SKI Smad4 binding domain                1.4        6.8   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Orthopox_B11R     1/1      42    57 ..     1    16 [.     3.4      2.9
c-SKI_SMAD_bind   1/1      44    60 ..    82    98 .]     1.4      6.8
IFRD              1/1      45    56 ..   354   365 .]    -0.2      6.5
TIR               1/1      96   111 ..   131   150 .]     0.9      5.4
Orthopox_N1       1/1     165   178 ..   100   113 .]     0.7      6.4
IMPDH             1/1     186   194 .]     1     9 [.     0.6        6

Alignments of top-scoring domains:
Orthopox_B11R: domain 1 of 1, from 42 to 57: score 3.4, E = 2.9
                   *->DtdvanvEDimnEiDR<-*
                      D + a  EDi+ Ei+R
  gi|5595973    42    DHEHATFEDILEEIER    57

c-SKI_SMAD_bind: domain 1 of 1, from 44 to 60: score 1.4, E = 6.8
                CS    CHHHHHHHHHHHHCC--
                   *->eeakLeqvLeevkekFd<-*
                      e+a+ e +Lee++ k +
  gi|5595973    44    EHATFEDILEEIERKLN    60

IFRD: domain 1 of 1, from 45 to 56: score -0.2, E = 6.5
                   *->RstFRDVlrfvE<-*
                      ++tF D+l+ +E
  gi|5595973    45    HATFEDILEEIE    56

TIR: domain 1 of 1, from 96 to 111: score 0.9, E = 5.4
                CS    SG.....GGCCHHHHHHHHH
                   *->dktersqsdrikfWkkalya<-*
                      +k+e    d+i+fWk++
  gi|5595973    96    EKEE----DMIHFWKRLSRL    111

Orthopox_N1: domain 1 of 1, from 165 to 178: score 0.7, E = 6.4
                   *->rmiekyfddlmidl<-*
                      +mie+yfd   + l
  gi|5595973   165    QMIETYFDFRLYRL    178

IMPDH: domain 1 of 1, from 186 to 194: score 0.6, E = 6
                CS    EB-GGGGEE
                RF    xxxxxxxxx
                   *->egLTFDDVL<-*
                      + L+FDDVL
  gi|5595973   186    KLLDFDDVL    194

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