hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 57208690.fa
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Query sequence: gi|57208690|emb|CAI42871.1|
Accession: [none]
Description: novel protein similar to mouse f-box only protein 16 Fbxo16 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF2227 Uncharacterized metal-binding protein 4.7 0.25 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 4.5 0.36 1
SMI1_KNR4 SMI1 / KNR4 family 5.6 0.47 1
Tfb2 Transcription factor Tfb2 -0.1 0.47 1
CDC73 RNA pol II accessory factor, Cdc73 fa 3.3 0.87 1
IL6 Interleukin-6/G-CSF/MGF family 2.8 1.9 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 3.2 4.8 1
PP2A_B_subs_rcg Serine-threonine phosphatase 2A subun 2.6 5.3 1
DASH_Dad1 DASH complex subunit Dad1 1.9 5.5 1
Peptidase_M74 Penicillin-insensitive murein endopep -0.2 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M74 1/1 5 13 .. 1 9 [. -0.2 8.4
CDC73 1/1 33 50 .. 297 314 .] 3.3 0.87
DUF2227 1/1 72 108 .. 155 189 .. 4.7 0.25
SMI1_KNR4 1/1 117 132 .. 127 142 .] 5.6 0.47
DASH_Dad1 1/1 123 132 .. 68 77 .] 1.9 5.5
IL6 1/1 124 138 .. 140 154 .] 2.8 1.9
Tfb2 1/1 128 142 .. 1 15 [. -0.1 0.47
vATP-synt_E 1/1 129 142 .. 196 209 .] 4.5 0.36
PAAD_DAPIN 1/1 176 191 .. 1 16 [. 3.2 4.8
PP2A_B_subs_rcg 1/1 190 206 .. 1 18 [. 2.6 5.3
Alignments of top-scoring domains:
Peptidase_M74: domain 1 of 1, from 5 to 13: score -0.2, E = 8.4
*->qSIGsYanG<-*
qSIG ++ G
gi|5720869 5 QSIGIFSDG 13
CDC73: domain 1 of 1, from 33 to 50: score 3.3, E = 0.87
*->ravvsqfWetLEkfvrkr<-*
r+ v+ fWe+L +v+
gi|5720869 33 RPEVRDFWEKLGSYVATE 50
DUF2227: domain 1 of 1, from 72 to 108: score 4.7, E = 0.25
*->lqshpeellafllA..GLelGawlHsIaDwvvsawkr<-*
l++ ++++++f+ A++G +G+ H+++Dw++s w +
gi|5720869 72 LSQLSQLTGTFFTAptGIATGSYQHILSDWLGSQWGK 108
SMI1_KNR4: domain 1 of 1, from 117 to 132: score 5.6, E = 0.47
*->deivvvAdSFeefLek<-*
+++ + ++SF++fLe+
gi|5720869 117 ESKLQTWSSFTDFLEE 132
DASH_Dad1: domain 1 of 1, from 123 to 132: score 1.9, E = 5.5
*->WkhFynglne<-*
W+ F ++l+e
gi|5720869 123 WSSFTDFLEE 132
IL6: domain 1 of 1, from 124 to 138: score 2.8, E = 1.9
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
+s+ +FLe +l +R
gi|5720869 124 SSFTDFLEETLKTVR 138
Tfb2: domain 1 of 1, from 128 to 142: score -0.1, E = 0.47
*->dFLetipspvlqRLY<-*
dFLe+ + v+ LY
gi|5720869 128 DFLEETLKTVRKQLY 142
vATP-synt_E: domain 1 of 1, from 129 to 142: score 4.5, E = 0.36
*->vfeqlLpeIrkaLF<-*
+ e+ L+++rk+L+
gi|5720869 129 FLEETLKTVRKQLY 142
PAAD_DAPIN: domain 1 of 1, from 176 to 191: score 3.2, E = 4.8
CS HHHHHHHHHHHS-HHH
*->krilLlkyLEeLndee<-*
+ + L ++L+eL++e+
gi|5720869 176 TAQALADGLMELSKED 191
PP2A_B_subs_rcg: domain 1 of 1, from 190 to 206: score 2.6, E = 5.3
*->ektvsasprkvtRFanaH<-*
e vs+s++kv ++n H
gi|5720869 190 EDSVSVSLKKV-NYENQH 206
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