hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 59714312.fa
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Query sequence: gi|59714312|ref|YP_207087.1|
Accession: [none]
Description: hypothetical protein VF_A1129 [Vibrio fischeri ES114]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_tran_28_C Glycosyltransferase family 28 C-termi 9.3 0.027 1
VWA_N VWA N-terminal 6.3 0.12 1
DUF2222 Uncharacterized signal transduction h 5.5 0.23 1
VHS VHS domain 6.5 0.32 1
BNR BNR/Asp-box repeat 8.2 0.37 1
Phage_rep_O Bacteriophage replication protein O 3.8 0.67 1
DUF2351 Uncharacterized conserved protein (DU 3.3 0.75 1
Recombinase Recombinase 5.4 0.84 1
tRNA-synt_1f tRNA synthetases class I (K) 2.8 1 1
DUF2597 Protein of unknown function (DUF2598) 1.5 1 1
ASD2 Apx/Shroom domain ASD2 2.7 1.1 1
Thy1 Thymidylate synthase complementing pr 4.0 1.1 1
MHC_II_alpha Class II histocompatibility antigen, 4.7 1.5 1
Urm1 Urm1 (Ubiquitin related modifier) -0.1 1.6 1
PRRSV_2b Porcine reproductive and respiratory 2.6 1.6 1
DUF683 Protein of unknown function (DUF683) 4.6 1.9 1
FlbT Flagellar protein FlbT 3.3 2 1
DUF1811 Protein of unknown function (DUF1811) 3.4 2.6 1
DUF2063 Uncharacterized protein conserved in 3.4 2.6 1
LuxQ-periplasm LuxQ, periplasmic 1.5 2.8 1
Kri1 KRI1-like family 2.0 2.8 1
ETRAMP Malarial early transcribed membrane p 2.5 2.9 1
DUF757 Domain of Unknown Function (DUF757) 2.9 2.9 1
UPF0175 Uncharacterised protein family (UPF01 3.6 3 1
SNARE SNARE domain 4.2 3 1
PEGSRP Protein of unknown function (DUF1584) 4.3 3.1 1
Rhabdo_M1 Rhabdovirus M1 matrix protein (M1 pol 2.3 3.3 1
DUF2088 Uncharacterized conserved protein (DU 2.5 3.6 1
DUF2418 Protein of unknown function (DUF2418) 2.8 3.7 1
OmpH Outer membrane protein (OmpH-like) 1.9 3.9 1
DUF947 Domain of unknown function (DUF947) 1.5 4.1 1
tRNA-synt_1e tRNA synthetases class I (C) catalyti 0.5 4.3 1
Glyco_hydro_10 Glycosyl hydrolase family 10 0.3 4.5 1
Ribosomal_L15e Ribosomal L15 1.1 4.5 1
Parvo_coat Parvovirus coat protein VP2 0.1 4.6 1
DUF1362 Protein of unknown function (DUF1362) 2.0 4.6 1
DUF552 Protein of unknown function (DUF552) 3.1 4.8 1
RUN RUN domain 1.5 4.9 1
Tom5 Mitochondrial import receptor subunit 1.9 4.9 1
CP12 CP12 domain 2.2 4.9 1
ATP-synt_D ATP synthase subunit D 1.0 5.1 1
Beny_P26 Furovirus P26 1.7 5.1 1
YqeY Yqey-like protein 2.7 5.1 1
LRRNT_2 Leucine rich repeat N-terminal domain 2.1 5.1 1
PWWP PWWP domain 2.2 5.2 1
DUF1679 Protein of unknown function (DUF1679) 0.8 5.2 1
DUF821 Arabidopsis thaliana protein of unkno -0.6 5.3 1
Innexin Innexin 0.7 5.3 1
GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) fa -0.6 5.5 1
PI-PLC-Y Phosphatidylinositol-specific phospho 1.9 5.5 1
M20_dimer Peptidase dimerisation domain 2.7 5.5 1
PMEI Plant invertase/pectin methylesterase 2.1 5.5 1
CDC14 Cell division control protein 14, SIN -0.4 5.6 1
Taeniidae_ag Taeniidae antigen 2.3 5.7 1
Surfac_D-trimer Lung surfactant protein D coiled-coil 2.1 5.8 1
DUF1705 Domain of unknown function (DUF1705) 1.8 6 1
DHHA1 DHHA1 domain 2.7 6 1
RplB Rare lipoprotein B family 0.5 6.2 1
Sas10_Utp3_C Sas10 C-terminal domain 2.7 6.3 1
DltD_M DltD central region 1.1 6.4 1
DUF1409 Protein of unknown function (DUF1409) 1.6 6.6 2
A2M_comp A-macroglobulin complement component -0.1 6.8 1
GUN4 GUN4-like 1.2 6.8 1
MucB_RseB MucB/RseB family 0.1 7.1 1
Mer2 Mer2 0.9 7.1 1
SNAP-25 SNAP-25 family 2.2 7.2 1
priB_priC Primosomal replication protein priB a 1.1 7.3 1
TBCA Tubulin binding cofactor A 1.4 7.4 2
ApbE ApbE family 0.5 7.4 1
U-box U-box domain 0.7 7.4 1
Rho_GDI RHO protein GDP dissociation inhibito -0.4 7.4 1
HALZ Homeobox associated leucine zipper 2.3 7.5 1
bZIP_1 bZIP transcription factor 2.2 7.5 2
Wx5_PLAF3D7 Protein of unknown function (Wx5_PLAF 1.3 7.5 1
TFIID_20kDa Transcription initiation factor TFIID 1.7 7.6 1
Bim_N Bim protein N-terminus 1.3 7.6 1
3_5_exonuc 3'-5' exonuclease 0.5 7.9 1
Glyco_hydro_77 4-alpha-glucanotransferase -0.4 7.9 1
DUF1310 Protein of unknown function (DUF1310) 1.5 7.9 1
DUF2395 Protein of unknown function (DUF2395) 1.6 8.2 1
Nop25 Nucleolar protein 12 (25kDa) 0.7 8.2 1
Inhibitor_I34 Saccharopepsin inhibitor I34 1.9 8.3 1
Apolipoprotein Apolipoprotein A1/A4/E domain 0.6 8.3 1
Herpes_U5 Herpesvirus U5-like family -0.1 8.3 1
IDO Indoleamine 2,3-dioxygenase -1.0 8.7 1
DUF1403 Protein of unknown function (DUF1403) 0.3 8.8 1
DEK_C DEK C terminal domain 2.2 8.9 1
BON Putative phospholipid-binding domain 2.4 8.9 1
FliG_C FliG C-terminal domain 2.0 9.1 1
PK Pyruvate kinase, barrel domain -0.7 9.2 1
Rhabdo_matrix Rhabdovirus matrix protein 0.8 9.2 1
I_LWEQ I/LWEQ domain 0.5 9.3 1
MbeB_N MbeB-like, N-term conserved region 1.8 9.3 1
ENOD93 Early nodulin 93 ENOD93 protein 0.9 9.3 1
SlyX SlyX -0.6 9.4 1
MRC1 MRC1-like domain 0.7 9.5 1
DUF2479 Domain of unknown function (DUF2479) 0.6 9.8 1
DEAD_2 DEAD_2 0.7 9.9 1
Rotamase PPIC-type PPIASE domain 0.9 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
bZIP_1 1/2 83 100 .. 44 64 .] 1.9 9.5
DUF1409 1/2 83 97 .. 37 51 .] 0.6 14
Apolipoprotein 1/1 84 113 .. 237 267 .] 0.6 8.3
M20_dimer 1/1 114 153 .. 74 116 .] 2.7 5.5
DUF821 1/1 134 145 .. 400 411 .] -0.6 5.3
U-box 1/1 139 151 .. 69 81 .] 0.7 7.4
Herpes_U5 1/1 153 176 .. 528 551 .] -0.1 8.3
PEGSRP 1/1 164 186 .. 1 23 [. 4.3 3.1
RplB 1/1 179 196 .. 146 162 .] 0.5 6.2
Innexin 1/1 221 234 .. 399 412 .] 0.7 5.3
Nop25 1/1 265 288 .. 156 179 .. 0.7 8.2
DEAD_2 1/1 272 288 .. 192 210 .] 0.7 9.9
Rhabdo_matrix 1/1 272 279 .. 161 168 .] 0.8 9.2
YqeY 1/1 281 295 .. 92 106 .. 2.7 5.1
Tom5 1/1 282 290 .. 9 17 .. 1.9 4.9
DUF1811 1/1 283 292 .. 1 10 [. 3.4 2.6
UPF0175 1/1 283 295 .. 63 75 .] 3.6 3
DEK_C 1/1 284 295 .. 1 12 [. 2.2 8.9
HALZ 1/1 286 302 .. 29 45 .] 2.3 7.5
priB_priC 1/1 315 343 .. 150 178 .] 1.1 7.3
DUF2479 1/1 328 344 .. 168 184 .] 0.6 9.8
PMEI 1/1 371 387 .. 146 162 .] 2.1 5.5
I_LWEQ 1/1 376 389 .. 1 14 [. 0.5 9.3
Taeniidae_ag 1/1 386 409 .. 63 86 .] 2.3 5.7
bZIP_1 2/2 389 418 .. 34 64 .] 0.4 26
TBCA 1/2 397 416 .. 63 86 .. 1.0 9.9
Sas10_Utp3_C 1/1 433 443 .. 68 78 .] 2.7 6.3
DUF1409 2/2 448 462 .. 37 51 .] 1.0 10
Surfac_D-trimer 1/1 450 465 .. 1 16 [. 2.1 5.8
IDO 1/1 462 473 .. 428 439 .] -1.0 8.7
DHHA1 1/1 469 488 .. 1 20 [. 2.7 6
PWWP 1/1 547 577 .. 55 86 .] 2.2 5.2
tRNA-synt_1e 1/1 582 609 .. 127 154 .. 0.5 4.3
tRNA-synt_1f 1/1 734 757 .. 1 27 [. 2.8 1
DUF757 1/1 761 769 .. 131 139 .] 2.9 2.9
DUF1403 1/1 776 790 .. 251 265 .. 0.3 8.8
DUF2418 1/1 829 848 .. 1 20 [. 2.8 3.7
Rhabdo_M1 1/1 875 892 .. 213 230 .] 2.3 3.3
ETRAMP 1/1 909 929 .. 66 86 .] 2.5 2.9
MucB_RseB 1/1 969 990 .. 240 261 .. 0.1 7.1
LRRNT_2 1/1 1018 1035 .. 1 21 [. 2.1 5.1
ATP-synt_D 1/1 1085 1093 .. 192 200 .] 1.0 5.1
MRC1 1/1 1096 1108 .. 165 177 .] 0.7 9.5
Recombinase 1/1 1184 1197 .. 113 126 .] 5.4 0.84
PI-PLC-Y 1/1 1203 1229 .. 29 55 .. 1.9 5.5
Glyco_tran_28_C 1/1 1208 1272 .. 119 181 .] 9.3 0.027
VHS 1/1 1214 1246 .. 118 153 .] 6.5 0.32
DUF2222 1/1 1225 1235 .. 1 11 [. 5.5 0.23
CDC14 1/1 1229 1248 .. 323 341 .] -0.4 5.6
ASD2 1/1 1232 1242 .. 293 303 .] 2.7 1.1
Inhibitor_I34 1/1 1247 1259 .. 1 13 [. 1.9 8.3
DUF947 1/1 1254 1274 .. 125 145 .. 1.5 4.1
DUF552 1/1 1300 1309 .. 47 56 .] 3.1 4.8
MbeB_N 1/1 1329 1344 .. 37 52 .] 1.8 9.3
DUF1679 1/1 1359 1370 .. 415 426 .] 0.8 5.2
Mer2 1/1 1377 1388 .. 215 226 .] 0.9 7.1
Urm1 1/1 1391 1395 .. 109 113 .] -0.1 1.6
FlbT 1/1 1396 1405 .. 118 127 .] 3.3 2
Glyco_hydro_10 1/1 1476 1485 .. 347 356 .] 0.3 4.5
SlyX 1/1 1514 1522 .. 1 9 [. -0.6 9.4
3_5_exonuc 1/1 1591 1611 .. 1 21 [. 0.5 7.9
PK 1/1 1728 1750 .. 338 358 .] -0.7 9.2
Thy1 1/1 1731 1755 .. 223 247 .] 4.0 1.1
VWA_N 1/1 1738 1799 .. 1 70 [. 6.3 0.12
Ribosomal_L15e 1/1 1760 1771 .. 1 12 [. 1.1 4.5
DUF2351 1/1 1765 1810 .. 460 523 .] 3.3 0.75
BON 1/1 1995 2016 .. 41 64 .] 2.4 8.9
OmpH 1/1 2081 2089 .. 160 168 .] 1.9 3.9
ApbE 1/1 2122 2152 .. 1 33 [. 0.5 7.4
Bim_N 1/1 2131 2136 .. 1 6 [. 1.3 7.6
RUN 1/1 2156 2181 .. 148 174 .] 1.5 4.9
GDA1_CD39 1/1 2182 2205 .. 534 557 .] -0.6 5.5
FliG_C 1/1 2391 2404 .. 45 58 .. 2.0 9.1
Glyco_hydro_77 1/1 2518 2545 .. 553 585 .] -0.4 7.9
ENOD93 1/1 2535 2546 .. 69 80 .] 0.9 9.3
DUF2088 1/1 2548 2571 .. 1 26 [. 2.5 3.6
MHC_II_alpha 1/1 2631 2647 .. 1 17 [. 4.7 1.5
DUF2063 1/1 2800 2808 .. 85 93 .] 3.4 2.6
PRRSV_2b 1/1 2832 2842 .. 1 12 [. 2.6 1.6
Rho_GDI 1/1 2865 2890 .. 1 28 [. -0.4 7.4
GUN4 1/1 2874 2886 .. 1 13 [. 1.2 6.8
Kri1 1/1 2874 2888 .. 1 15 [. 2.0 2.8
Rotamase 1/1 2877 2901 .. 1 28 [. 0.9 10
Beny_P26 1/1 2980 2988 .. 1 9 [. 1.7 5.1
DUF1705 1/1 3096 3112 .. 141 157 .] 1.8 6
SNARE 1/1 3123 3145 .. 41 63 .] 4.2 3
BNR 1/1 3154 3165 .. 1 12 [] 8.2 0.37
DUF1362 1/1 3175 3185 .. 103 113 .. 2.0 4.6
DUF1310 1/1 3216 3228 .. 113 125 .] 1.5 7.9
DltD_M 1/1 3274 3285 .. 1 12 [. 1.1 6.4
CP12 1/1 3338 3349 .. 52 63 .. 2.2 4.9
TBCA 2/2 3374 3386 .. 85 97 .] 0.4 15
DUF2395 1/1 3448 3458 .. 65 75 .] 1.6 8.2
A2M_comp 1/1 3451 3458 .. 1 8 [. -0.1 6.8
Wx5_PLAF3D7 1/1 3453 3459 .. 1 7 [. 1.3 7.5
TFIID_20kDa 1/1 3480 3487 .. 1 8 [. 1.7 7.6
DUF683 1/1 3481 3489 .. 22 30 .. 4.6 1.9
DUF2597 1/1 3494 3501 .. 127 134 .] 1.5 1
SNAP-25 1/1 3525 3536 .. 59 73 .] 2.2 7.2
Parvo_coat 1/1 3578 3598 .. 554 574 .] 0.1 4.6
Phage_rep_O 1/1 3760 3775 .. 1 18 [. 3.8 0.67
LuxQ-periplasm 1/1 3772 3782 .. 231 241 .] 1.5 2.8
Alignments of top-scoring domains:
bZIP_1: domain 1 of 2, from 83 to 100: score 1.9, E = 9.5
CS HHHHHHHHHHHHHHHHHHHHH
*->aLrkelerLkkevakLksene<-*
+Lr ++L+++v++L+s++e
gi|5971431 83 SLR---DELEQHVQRLESDIE 100
DUF1409: domain 1 of 2, from 83 to 97: score 0.6, E = 14
*->slavyleqhklkLek<-*
sl leqh +Le+
gi|5971431 83 SLRDELEQHVQRLES 97
Apolipoprotein: domain 1 of 1, from 84 to 113: score 0.6, E = 8.3
CS . ...XXXXXXXXXXXXXXXXXXXXXXXXXXX
*->L.eqleqkveelrswfePyaEdlkkqLaqllE<-*
L+++leq v++l+s++e ++ +++ ql +
gi|5971431 84 LrDELEQHVQRLESDIELHGININSD--QLRD 113
M20_dimer: domain 1 of 1, from 114 to 153: score 2.7, E = 5.5
CS CCEESSEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTTTSS T-
*->tNviPaeaeakfdiRDFDllpgedleellkeieaileeeap.ge<-*
+ +i+++ + ++++ ++ +d e ++++e+++e++ p+
gi|5971431 114 VQIIAGKLRSQIEC----ISQVQDQESTQERVEKWIEAHVPkKI 153
DUF821: domain 1 of 1, from 134 to 145: score -0.6, E = 5.3
*->keevirqVekwE<-*
+e++ ++Vekw+
gi|5971431 134 QESTQERVEKWI 145
U-box: domain 1 of 1, from 139 to 151: score 0.7, E = 7.4
CS HHHHHHHHHT---
*->ekIdawleekrea<-*
e++++w+e++ +
gi|5971431 139 ERVEKWIEAHVPK 151
Herpes_U5: domain 1 of 1, from 153 to 176: score -0.1, E = 8.3
*->vekeeravrqkleslrkrllprvy<-*
++ e+r++ +l+++r + + ++y
gi|5971431 153 IVGEARPLERALGVTRHAKPEEHY 176
PEGSRP: domain 1 of 1, from 164 to 186: score 4.3, E = 3.1
*->LAvgRkPpGeePeGSRpSAkSLv<-*
L v R ee GSR+ A+SLv
gi|5971431 164 LGVTRHAKPEEHYGSRKVAQSLV 186
RplB: domain 1 of 1, from 179 to 196: score 0.5, E = 6.2
*->rdaAeQLirrlq.aLkaa<-*
r +A++L+rrl +aLka
gi|5971431 179 RKVAQSLVRRLEgALKAM 196
Innexin: domain 1 of 1, from 221 to 234: score 0.7, E = 5.3
*->tElvgeLwkkylen<-*
+El++e++ +y+ +
gi|5971431 221 RELIREMAHDYHKI 234
Nop25: domain 1 of 1, from 265 to 288: score 0.7, E = 8.2
*->dpsrEglekaenfdelaedenvkl<-*
++++Eg++++++++++a++++++l
gi|5971431 265 EVDSEGMYEQAKEAYSAQLSEEEL 288
DEAD_2: domain 1 of 1, from 272 to 288: score 0.7, E = 9.9
*->edvcieEeslSfeisersL<-*
++ ++e ++S+++se++L
gi|5971431 272 YEQAKE--AYSAQLSEEEL 288
Rhabdo_matrix: domain 1 of 1, from 272 to 279: score 0.8, E = 9.2
*->YqqaKDyY<-*
Y qaK++Y
gi|5971431 272 YEQAKEAY 279
YqeY: domain 1 of 1, from 281 to 295: score 2.7, E = 5.1
CS ----HHHHHHHHHHH
*->qQLsdeEiealvdea<-*
+QLs+eE++a ++++
gi|5971431 281 AQLSEEELRAEINAI 295
Tom5: domain 1 of 1, from 282 to 290: score 1.9, E = 4.9
*->QlSeEELka<-*
QlSeEEL+a
gi|5971431 282 QLSEEELRA 290
DUF1811: domain 1 of 1, from 283 to 292: score 3.4, E = 2.6
CS --HHHHHHHH
*->MseyELrqEI<-*
+se+ELr EI
gi|5971431 283 LSEEELRAEI 292
UPF0175: domain 1 of 1, from 283 to 295: score 3.6, E = 3
*->YdlEELqeDievl<-*
+++EEL+++i ++
gi|5971431 283 LSEEELRAEINAI 295
DEK_C: domain 1 of 1, from 284 to 295: score 2.2, E = 8.9
CS -HHHHHHHHHHH
*->sdeeikeaireI<-*
s+ee++++i +I
gi|5971431 284 SEEELRAEINAI 295
HALZ: domain 1 of 1, from 286 to 302: score 2.3, E = 7.5
*->deLrAevlsLkeklqde<-*
+eLrAe+ + ++ ++++
gi|5971431 286 EELRAEINAITAQSPKD 302
priB_priC: domain 1 of 1, from 315 to 343: score 1.1, E = 7.3
*->kallatEqRLARCraAllKIEnritrrer<-*
+++ a EqRL A I n it++ +
gi|5971431 315 RVVSALEQRLTFQNKACDDIQNEITKLDK 343
DUF2479: domain 1 of 1, from 328 to 344: score 0.6, E = 9.8
*->eekvedlkqeldnledy<-*
++ +d+++e++ l+++
gi|5971431 328 NKACDDIQNEITKLDKK 344
PMEI: domain 1 of 1, from 371 to 387: score 2.1, E = 5.5
CS ..HHHHHHHHHHHHHHH
*->rkrnknlteltsnaLAl<-*
++++ + l snaLA+
gi|5971431 371 CTYLAVTEGLLSNALAI 387
I_LWEQ: domain 1 of 1, from 376 to 389: score 0.5, E = 9.3
CS HHHHHHHHHHHHHH
*->VnesILsaakaImk<-*
V e +Ls+a+aI+k
gi|5971431 376 VTEGLLSNALAIIK 389
Taeniidae_ag: domain 1 of 1, from 386 to 409: score 2.3, E = 5.7
*->eicqearlKirksLaeYvkgLkne<-*
+i++ ++lK +L e +k+Lk
gi|5971431 386 AIIKTDKLKTANRLSEELKNLKQY 409
bZIP_1: domain 2 of 2, from 389 to 418: score 0.4, E = 26
CS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
*->kveeLeaeNkaLrkelerLkkevakLksene<-*
k ++L++ N +L +el++Lk+ +k k+++
gi|5971431 389 KTDKLKTAN-RLSEELKNLKQYLPKEKNQTY 418
TBCA: domain 1 of 2, from 397 to 416: score 1.0, E = 9.9
CS HHHHHHHHHHHHHHH......T--
*->rRlrnaveDLeqfLekeGStVseq<-*
+Rl ++ + L+q+L ke ++q
gi|5971431 397 NRLSEELKNLKQYLPKE----KNQ 416
Sas10_Utp3_C: domain 1 of 1, from 433 to 443: score 2.7, E = 6.3
*->IkknvvKSvKl<-*
Ik++vvK +K
gi|5971431 433 IKSGVVKATKA 443
DUF1409: domain 2 of 2, from 448 to 462: score 1.0, E = 10
*->slavyleqhklkLek<-*
+++++l q+ kLek
gi|5971431 448 EPVKALSQQLTKLEK 462
Surfac_D-trimer: domain 1 of 1, from 450 to 465: score 2.1, E = 5.8
CS HHHHHHHHHHHHHHHH
*->vaaLrqrveaLegqlq<-*
v+aL q+++ Le+ ++
gi|5971431 450 VKALSQQLTKLEKSVK 465
IDO: domain 1 of 1, from 462 to 473: score -1.0, E = 8.7
CS HHHHHHHHHT-S
*->KeVRDtTektll<-*
K+V+Dt k+ll
gi|5971431 462 KSVKDTNDKVLL 473
DHHA1: domain 1 of 1, from 469 to 488: score 2.7, E = 6
*->dkpvvvfaeedgkikvSaRs<-*
dk+ v+++ +gk++vS R+
gi|5971431 469 DKVLLVANKAKGKGHVSYRV 488
PWWP: domain 1 of 1, from 547 to 577: score 2.2, E = 5.2
CS TTEE.EEEECCCEEEC.CCHHHC--HHHHHHH
*->dhkyrawvskkrlkPlLdsdiekfhkdekrKg<-*
dh++++ +s++ l+++ + ++ ++e+ +
gi|5971431 547 DHEFKSTSSPSPLMDI-LLHKRHLESPEMKMW 577
tRNA-synt_1e: domain 1 of 1, from 582 to 609: score 0.5, E = 4.3
CS ............................
*->ilklklPkfvdalkavldAlevieksdi<-*
+l+ l k+v+ +ka+ Ale e+sd+
gi|5971431 582 TLNEILVKHVEQVKAAVKALETNERSDS 609
tRNA-synt_1f: domain 1 of 1, from 734 to 757: score 2.8, E = 1
CS --HHHHHHHHHHHHC---.....SEEE
*->khWpdeeAekllkerfkkkapekgeil<-*
khW+ +Aek+ + + p++ge+l
gi|5971431 734 KHWAMILAEKIEASQ---ALPSPGEVL 757
DUF757: domain 1 of 1, from 761 to 769: score 2.9, E = 2.9
*->NReGlNDwv<-*
NR+GlN++
gi|5971431 761 NRYGLNEET 769
DUF1403: domain 1 of 1, from 776 to 790: score 0.3, E = 8.8
*->sgAaeAvRLaaELdR<-*
+gA+ A RL+aEL+R
gi|5971431 776 KGALMATRLSAELAR 790
DUF2418: domain 1 of 1, from 829 to 848: score 2.8, E = 3.7
*->dedvweLkvWdPspfllnLF<-*
+e+v+eL+ +P+ f+ n+F
gi|5971431 829 TEHVFELALSIPTTFMFNIF 848
Rhabdo_M1: domain 1 of 1, from 875 to 892: score 2.3, E = 3.3
*->GsrefFkkVvkavKaelk<-*
Gs +k++ +vK+++k
gi|5971431 875 GSDKPYKAIDMMVKKRMK 892
ETRAMP: domain 1 of 1, from 909 to 929: score 2.5, E = 2.9
*->aAligtalGlGyykkkKkkkk<-*
+Al g G Gy ++k+ ++k
gi|5971431 909 TALGGVLAGAGYVYNKHVSGK 929
MucB_RseB: domain 1 of 1, from 969 to 990: score 0.1, E = 7.1
*->GFslvssnrrrlplteepiies<-*
GF++ s +++r++lt + ++es
gi|5971431 969 GFEVLSDHVQRQVLTLSTPVES 990
LRRNT_2: domain 1 of 1, from 1018 to 1035: score 2.1, E = 5.1
*->lndDgdALLafKssltdsldd<-*
ln+D + L + + sl++ d
gi|5971431 1018 LNSDSAVLRRVRRSLDS---D 1035
ATP-synt_D: domain 1 of 1, from 1085 to 1093: score 1.0, E = 5.1
*->fRLKkvKkk<-*
+RLKk++++
gi|5971431 1085 VRLKKAQRM 1093
MRC1: domain 1 of 1, from 1096 to 1108: score 0.7, E = 9.5
*->LakNpkskAFfrs<-*
La+N++ k F++s
gi|5971431 1096 LAENEEQKRFLQS 1108
Recombinase: domain 1 of 1, from 1184 to 1197: score 5.4, E = 0.84
*->eelfdraQeilker<-*
ee+f++aQ+++ r
gi|5971431 1184 EEEFQKAQQAIGGR 1197
PI-PLC-Y: domain 1 of 1, from 1203 to 1229: score 1.9, E = 5.5
*->eisSFsErkvkakkllkespvefVkyN<-*
++sS E a++l k++ ve+ +yN
gi|5971431 1203 HMSSQEELNYHALTLIKHLQVEVNRYN 1229
Glyco_tran_28_C: domain 1 of 1, from 1208 to 1272: score 9.3, E = 0.027
*->eHQdnNAlelvkagaalvllqkeltpekLveallkllskklr..lye
e+ +++Al l k++ +v++++++ +e++++ +++l+s+ +++++y+
gi|5971431 1208 EELNYHALTLIKHLQVEVNRYNDF-EEQVQSLVDDLKSSQMNsdNYS 1253
kakaag.alarlkdaikrl<-*
++ ++l+r++++++
gi|5971431 1254 VSELHQtILERAREGKQSS 1272
VHS: domain 1 of 1, from 1214 to 1246: score 6.5, E = 0.32
CS HHHHHHHHHHH-.......TT-HHHHHHHHHHHHTT
*->ileliqeWadafCKhdknkpdlkyisdvyklLKrkG<-*
+l+li+ +++++ +++++ +++++++++LK+ +
gi|5971431 1214 ALTLIKHLQVEV---NRYNDFEEQVQSLVDDLKSSQ 1246
DUF2222: domain 1 of 1, from 1225 to 1235: score 5.5, E = 0.23
*->vhRYneLqnqL<-*
v+RYn+ ++q+
gi|5971431 1225 VNRYNDFEEQV 1235
CDC14: domain 1 of 1, from 1229 to 1248: score -0.4, E = 5.6
*->kYLsn.VdsLvedLnelkPf<-*
+++ ++V+sLv+dL+ ++
gi|5971431 1229 NDFEEqVQSLVDDLKSSQMN 1248
ASD2: domain 1 of 1, from 1232 to 1242: score 2.7, E = 1.1
*->EEQLkcLrdsL<-*
EEQ+ +L d+L
gi|5971431 1232 EEQVQSLVDDL 1242
Inhibitor_I34: domain 1 of 1, from 1247 to 1259: score 1.9, E = 8.3
CS --HHHHHHHHHHH
*->mntDqqKvsEiFq<-*
mn D vsE+ q
gi|5971431 1247 MNSDNYSVSELHQ 1259
DUF947: domain 1 of 1, from 1254 to 1274: score 1.5, E = 4.1
*->lkehkkqEkElikeGKkstPy<-*
++e+++ E+++eGK+s Py
gi|5971431 1254 VSELHQTILERAREGKQSSPY 1274
DUF552: domain 1 of 1, from 1300 to 1309: score 3.1, E = 4.8
*->eiqrvgekIF<-*
+i+++++ IF
gi|5971431 1300 HIEKITSTIF 1309
MbeB_N: domain 1 of 1, from 1329 to 1344: score 1.8, E = 9.3
*->vreaLkesekkIsdaI<-*
vr L++s+ ++s I
gi|5971431 1329 VRNNLSLSSENLSNEI 1344
DUF1679: domain 1 of 1, from 1359 to 1370: score 0.8, E = 5.2
*->lEDvikvHesnl<-*
+ED++++++++l
gi|5971431 1359 IEDIEHAYLNSL 1370
Mer2: domain 1 of 1, from 1377 to 1388: score 0.9, E = 7.1
*->DLaLskRQaqlE<-*
D +Ls+RQ+q
gi|5971431 1377 DGSLSTRQDQID 1388
Urm1: domain 1 of 1, from 1391 to 1395: score -0.1, E = 1.6
CS -----
*->TLHGG<-*
TLHGG
gi|5971431 1391 TLHGG 1395
FlbT: domain 1 of 1, from 1396 to 1405: score 3.3, E = 2
*->LipyEaelLa<-*
Li+yE+e+L+
gi|5971431 1396 LIAYEQEILR 1405
Glyco_hydro_10: domain 1 of 1, from 1476 to 1485: score 0.3, E = 4.5
CS HHHHHHHHHH
*->PAYwavvdal<-*
PAY++v++ +
gi|5971431 1476 PAYNRVIESK 1485
SlyX: domain 1 of 1, from 1514 to 1522: score -0.6, E = 9.4
*->eLeaRleeL<-*
Le+Rl++L
gi|5971431 1514 CLEQRLIDL 1522
3_5_exonuc: domain 1 of 1, from 1591 to 1611: score 0.5, E = 7.9
CS SEEE-SHHHHHHHHHHHHHSS
*->yeivttedeledlieeLlnak<-*
+eivt del+ l+ L+n++
gi|5971431 1591 IEIVTGHDELKSLFTDLENHE 1611
PK: domain 1 of 1, from 1728 to 1750: score -0.7, E = 9.2
CS HHHHHHHHHHHHTSSHHHH HH
*->VktMheicleAEkalphrn..lf<-*
V+ +++i + AE+a++ +++++f
gi|5971431 1728 VQKQADIQRLAEQAIDQFKeeHF 1750
Thy1: domain 1 of 1, from 1731 to 1755: score 4.0, E = 1.1
CS -HHHHHHHHHHHHHHHHH-HHHHTT
*->qkEIRelAeaileilravaPavfad<-*
q+ I++lAe +++++++++ +v+ +
gi|5971431 1731 QADIQRLAEQAIDQFKEEHFDVYSA 1755
VWA_N: domain 1 of 1, from 1738 to 1799: score 6.3, E = 0.12
*->AEnvLqeahefnedlkannfqYYnAkainelqesieedgnlaelgdk
AE++ + +k++ f++Y+A ++++ iee ++ e
gi|5971431 1738 AEQA-------IDQFKEEHFDVYSAHLKATCYRLIEEAWRKHEDTPL 1777
pntkemeLtedanFknlpVntsv<-*
+ ++++ ++++++n Vn+s+
gi|5971431 1778 MFRSNLLIDKMRHEFN-EVNISL 1799
Ribosomal_L15e: domain 1 of 1, from 1760 to 1771: score 1.1, E = 4.5
*->GaYkYvrElwkk<-*
Y+ ++E+w+k
gi|5971431 1760 TCYRLIEEAWRK 1771
DUF2351: domain 1 of 1, from 1765 to 1810: score 3.3, E = 0.75
*->plegwaasqsveelplseevfdellkrLeksnallPellNtaRelLl
++e+w+ +++++ ++ s+ ++d+ ++++++ n +lP
gi|5971431 1765 IEEAWRKHEDTPLMFRSNLLIDKMRHEFNEVNISLPG---------- 1801
slnnsdnslrkfkewkV<-*
l + ++ +V
gi|5971431 1802 --------LVGKRGGHV 1810
BON: domain 1 of 1, from 1995 to 2016: score 2.4, E = 8.9
*->ekaeriarnvaGvkeVvNnievrg<-*
eka++i+ +v+ v +Vv ++v++
gi|5971431 1995 EKALEITSAVLAVPAVV--LSVAA 2016
OmpH: domain 1 of 1, from 2081 to 2089: score 1.9, E = 3.9
*->TddVlkkLn<-*
T+dVlk+L+
gi|5971431 2081 TNDVLKALK 2089
ApbE: domain 1 of 1, from 2122 to 2152: score 0.5, E = 7.4
*->ldriedqmStyrpdSelsrlNraag.geqpvkvs<-*
+++++++++ p S+ls+lNr a++++++v++s
gi|5971431 2122 IAHLNTSLTQ--P-SDLSALNRTASnLDTSVTLS 2152
Bim_N: domain 1 of 1, from 2131 to 2136: score 1.3, E = 7.6
*->QPSvlS<-*
QPS+lS
gi|5971431 2131 QPSDLS 2136
RUN: domain 1 of 1, from 2156 to 2181: score 1.5, E = 4.9
*->deegCeqllslLqgLsaldFsLdlkfe<-*
de++ eq+++ + L++l+++L+++++
gi|5971431 2156 DEQL-EQIRCGIEELNDLEIDLNNLTQ 2181
GDA1_CD39: domain 1 of 1, from 2182 to 2205: score -0.6, E = 5.5
*->DFmvGiAPsERRtKLtgkerLsvk<-*
D+ vG AP t t e+L+v+
gi|5971431 2182 DYPVGTAPMASLTDFTLDEQLQVA 2205
FliG_C: domain 1 of 1, from 2391 to 2404: score 2.0, E = 9.1
*->vLalALKGAseelr<-*
++a+AL+G+s+elr
gi|5971431 2391 DIATALRGSSQELR 2404
Glyco_hydro_77: domain 1 of 1, from 2518 to 2545: score -0.4, E = 7.9
CS TT-B---TT.......SSGHHHHHHHHHHHHHT
*->NWrwRlkpsldsPmLLelifalkafiklltaiy<-*
NWr++++ L+e + +l+++i ++ + +
gi|5971431 2518 NWRFKYRKG-----LVETTEELDKRILKASRND 2545
ENOD93: domain 1 of 1, from 2535 to 2546: score 0.9, E = 9.3
*->DKtvLelARkns<-*
DK +L+ +R +
gi|5971431 2535 DKRILKASRNDT 2546
DUF2088: domain 1 of 1, from 2548 to 2571: score 2.5, E = 3.6
*->YGkgtleldiPeenlvgvleSKpkdv<-*
YG++++ + +++ + +g +e pk+v
gi|5971431 2548 YGHSNIVVALNDAKQSGGVE--PKVV 2571
MHC_II_alpha: domain 1 of 1, from 2631 to 2647: score 4.7, E = 1.5
*->dHvgiyGinfyQssgps<-*
Hv+++Gi fyQ ++s
gi|5971431 2631 VHVSSDGIHFYQIDHTS 2647
DUF2063: domain 1 of 1, from 2800 to 2808: score 3.4, E = 2.6
*->gaeFpdFLq<-*
+aeF+++Lq
gi|5971431 2800 PAEFVQYLQ 2808
PRRSV_2b: domain 1 of 1, from 2832 to 2842: score 2.6, E = 1.6
*->mGsmqsLFDKiG<-*
Gs qsL D iG
gi|5971431 2832 -GSAQSLADEIG 2842
Rho_GDI: domain 1 of 1, from 2865 to 2890: score -0.4, E = 7.4
CS XXXXXXXXXXXSSXSXXSSXX.......
*->llEllrlAlcarvllAdkegdstavDEV<-*
lEl A +r+llA + +a+ V
gi|5971431 2865 -LELTSEANKLRQLLAKDDFK-PASHRV 2890
GUN4: domain 1 of 1, from 2874 to 2886: score 1.2, E = 6.8
CS HHHHHHTT-HHHH
*->LqelLasqnFkaA<-*
L++lLa +Fk A
gi|5971431 2874 LRQLLAKDDFKPA 2886
Kri1: domain 1 of 1, from 2874 to 2888: score 2.0, E = 2.8
*->ltdkdLddDFDPeew<-*
l+ ++ +dDF+P+ +
gi|5971431 2874 LRQLLAKDDFKPASH 2888
Rotamase: domain 1 of 1, from 2877 to 2901: score 0.9, E = 10
CS EEESSHHH....................
*->HILvkdeedrRPaShReeNitntreaAr<-*
L++ ++ ++PaShR ++n+ ++++
gi|5971431 2877 --LLAKDD-FKPASHRVFYPENSSNEVT 2901
Beny_P26: domain 1 of 1, from 2980 to 2988: score 1.7, E = 5.1
*->dvAYsDdvH<-*
++A++ + H
gi|5971431 2980 NMAFWEGAH 2988
DUF1705: domain 1 of 1, from 3096 to 3112: score 1.8, E = 6
*->nyigasikYlksqllsn<-*
+yig++i+ ++ +++++
gi|5971431 3096 QYIGSLIGNVRKTFFEA 3112
SNARE: domain 1 of 1, from 3123 to 3145: score 4.2, E = 3
CS HHHCHHHHCHHHHHHHHXXXXXX
*->ventqsrverankrLkkaaryqk<-*
+e ++s ++++n++ k+++ry+
gi|5971431 3123 FEGSSSILDGGNGQIKYFSRYKQ 3145
BNR: domain 1 of 1, from 3154 to 3165: score 8.2, E = 0.37
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
+S D G+TW +
gi|5971431 3154 LVSLDSGATWRR 3165
DUF1362: domain 1 of 1, from 3175 to 3185: score 2.0, E = 4.6
CS EEEEETTEEEE
*->RLDsRqaelAL<-*
RLDsR+a lAL
gi|5971431 3175 RLDSRNAPLAL 3185
DUF1310: domain 1 of 1, from 3216 to 3228: score 1.5, E = 7.9
*->gGssiSpkLtkLL<-*
++++iSpk +++L
gi|5971431 3216 QAGTISPKVAEQL 3228
DltD_M: domain 1 of 1, from 3274 to 3285: score 1.1, E = 6.4
*->lGqgGStSLsHf<-*
+G GS +L+H+
gi|5971431 3274 VGEVGSDDLVHY 3285
CP12: domain 1 of 1, from 3338 to 3349: score 2.2, E = 4.9
*->pLEeYckeNPEa<-*
++E Y eNPEa
gi|5971431 3338 AFERYFAENPEA 3349
TBCA: domain 2 of 2, from 3374 to 3386: score 0.4, E = 15
CS --SSS--HHHHHH
*->eqeLeeleeAkea<-*
+++L++ +++k+
gi|5971431 3374 QEGLIDYDTYKSS 3386
DUF2395: domain 1 of 1, from 3448 to 3458: score 1.6, E = 8.2
*->EhaqslLtiLk<-*
E++q ++iL+
gi|5971431 3448 EQVQGFQRILT 3458
A2M_comp: domain 1 of 1, from 3451 to 3458: score -0.1, E = 6.8
*->qGYqRqLs<-*
qG+qR+L+
gi|5971431 3451 QGFQRILT 3458
Wx5_PLAF3D7: domain 1 of 1, from 3453 to 3459: score 1.3, E = 7.5
*->yeRIlaE<-*
++RIl+E
gi|5971431 3453 FQRILTE 3459
TFIID_20kDa: domain 1 of 1, from 3480 to 3487: score 1.7, E = 7.6
CS -HHHHHHH
*->sKrkLqdL<-*
+K++L+dL
gi|5971431 3480 GKTNLHDL 3487
DUF683: domain 1 of 1, from 3481 to 3489: score 4.6, E = 1.9
*->KmdLHDLAE<-*
K++LHDL+E
gi|5971431 3481 KTNLHDLSE 3489
DUF2597: domain 1 of 1, from 3494 to 3501: score 1.5, E = 1
*->rINGVPYL<-*
+INGV Y
gi|5971431 3494 HINGVAYI 3501
SNAP-25: domain 1 of 1, from 3525 to 3536: score 2.2, E = 7.2
*->psggYIQPqRITNDA<-*
p+ ++I +ITN+A
gi|5971431 3525 PARAMI---KITNKA 3536
Parvo_coat: domain 1 of 1, from 3578 to 3598: score 0.1, E = 4.6
CS ----TTT.....GGGGS--TT
*->vtsnnanvnymsiekhlPyni<-*
v+sn+ +vny s+ +++ ++i
gi|5971431 3578 VSSNSGVVNYQSVDSTILSVI 3598
Phage_rep_O: domain 1 of 1, from 3760 to 3775: score 3.8, E = 0.67
*->SNtaklanfPrPklevvE<-*
SN++++++ rP ++ +E
gi|5971431 3760 SNLVEIIK--RPDEAIQE 3775
LuxQ-periplasm: domain 1 of 1, from 3772 to 3782: score 1.5, E = 2.8
CS EE---------
*->svQdNqnVltL<-*
++Q+N+ Vl L
gi|5971431 3772 AIQENEQVLEL 3782
//