hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            62180194.fa
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Query sequence: gi|62180194|ref|YP_216611.1|
Accession:      [none]
Description:    putative dipicolinate reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
ADK             Adenylate kinase                          2.1          3   1
RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3             1.2        3.3   1
DUF2054         Uncharacterized conserved protein (DU    -1.0        6.8   1
MurB_C          UDP-N-acetylenolpyruvoylglucosamine r     0.9         10   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF2054           1/1      13    20 ..   120   127 ..    -1.0      6.8
MurB_C            1/1      41    48 ..   126   133 .]     0.9       10
RNA_pol_Rpb1_3    1/1      61    73 ..     1    13 [.     1.2      3.3
ADK               1/1      70    80 ..   142   152 .]     2.1        3

Alignments of top-scoring domains:
DUF2054: domain 1 of 1, from 13 to 20: score -1.0, E = 6.8
                   *->SVlHENkY<-*
                      +V+HEN Y
  gi|6218019    13    VVQHENRY    20

MurB_C: domain 1 of 1, from 41 to 48: score 0.9, E = 10
                CS    -B-SEEEE
                   *->epEVkiIG<-*
                      ++E+k+I+
  gi|6218019    41    HEEIKFIS    48

RNA_pol_Rpb1_3: domain 1 of 1, from 61 to 73: score 1.2, E = 3.3
                CS    GSEETTTTCESS-
                   *->NIlsPqsGkPiig<-*
                      + l  +sG+P+ig
  gi|6218019    61    QMLANASGRPVIG    73

ADK: domain 1 of 1, from 70 to 80: score 2.1, E = 3
                CS    HHHHHHHHTTE
                RF    xxxxxxxxxxx
                   *->PvIdyYkkkGk<-*
                      PvI+yY k +k
  gi|6218019    70    PVIGYYGKINK    80

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