hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            62180715.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: gi|62180715|ref|YP_217132.1|
Accession:      [none]
Description:    hypothetical protein SC2145 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
RHS             RHS protein                               7.5       0.12   1
Phage_tail_T    Minor tail protein T                      1.7        2.8   1
Phage_CRI       Phage replication protein CRI             0.2        4.6   1
Cytochrom_B559  Cytochrome b559, alpha (gene psbE) an     2.8        4.9   1
HPC2            Histone promoter control 2 (HPC2)        -0.6        6.5   1
Erythrovirus_X  Erythrovirus X protein                   -0.1        8.6   1
NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family                    -0.2        9.1   1
KID             KID repeat                                4.7        9.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
RHS               1/1       3    17 ..    27    41 .]     7.5     0.12
Phage_CRI         1/1      19    50 ..   177   211 ..     0.2      4.6
Cytochrom_B559    1/1     100   109 ..    20    29 .]     2.8      4.9
HPC2              1/1     129   145 ..     1    17 [.    -0.6      6.5
NNMT_PNMT_TEMT    1/1     169   200 ..   155   190 ..    -0.2      9.1
Erythrovirus_X    1/1     194   201 ..     1     8 [.    -0.1      8.6
Phage_tail_T      1/1     224   233 ..    94   103 .]     1.7      2.8
KID               1/1     232   242 ..     1    11 []     4.7      9.4

Alignments of top-scoring domains:
RHS: domain 1 of 1, from 3 to 17: score 7.5, E = 0.12
                   *->rYdaWGnvleEevsq<-*
                      +Y +WGn+  Ee++
  gi|6218071     3    KYGEWGNLSGEENPV    17

Phage_CRI: domain 1 of 1, from 19 to 50: score 0.2, E = 4.6
                   *->aeqvanlkhrgtrqldketTLYFGknSKAnPGAGR<-*
                      +eqv++l      q dke+ LY+++    nPG GR
  gi|6218071    19    LEQVIRLPGQ---QYDKESGLYYNRHRYYNPGQGR    50

Cytochrom_B559: domain 1 of 1, from 100 to 109: score 2.8, E = 4.9
                   *->laiPtvFflG<-*
                      ++iP vF +G
  gi|6218071   100    ITIPGVFTVG    109

HPC2: domain 1 of 1, from 129 to 145: score -0.6, E = 6.5
                   *->nIaeelaknRnsvrgrs<-*
                      ++a++  k+Rn+++g +
  gi|6218071   129    KLADMIRKDRNYRKGKP    145

NNMT_PNMT_TEMT: domain 1 of 1, from 169 to 200: score -0.2, E = 9.1
                CS    EE--TTSSSTT..-TT-S.....S-SS..EEEEEEE
                   *->LkcDVhqspplPEgagvwKENEQvqlPpkaDcVvti<-*
                      L ++V+ ++ l   + vw EN+   +P + D V+t+
  gi|6218071   169    LNVNVTGPDTL--WS-VWWENDNSGIP-QMDSVLTA    200

Erythrovirus_X: domain 1 of 1, from 194 to 201: score -0.1, E = 8.6
                   *->mDsYLttP<-*
                      mDs Lt P
  gi|6218071   194    MDSVLTAP    201

Phage_tail_T: domain 1 of 1, from 224 to 233: score 1.7, E = 2.8
                   *->VRyGPDSepg<-*
                      V +GPD+++
  gi|6218071   224    VTFGPDGNEI    233

KID: domain 1 of 1, from 232 to 242: score 4.7, E = 9.4
                   *->KIdsVekeLkk<-*
                      +I sV++eL++
  gi|6218071   232    EISSVKSELRS    242

//