hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 67920621.fa
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Query sequence: gi|67920621|ref|ZP_00514141.1|
Accession: [none]
Description: hypothetical protein CwatDRAFT_6368 [Crocosphaera watsonii WH 8501]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TFIID_90kDa WD40 associated region in TFIID subun 6.2 0.33 1
DUF1887 Domain of unknown function (DUF1887) 2.0 1.5 1
DUF1577 Protein of unknown function (DUF1577) 0.7 2.6 1
BcsB Bacterial cellulose synthase subunit 0.7 3.9 1
DUF1318 Protein of unknown function (DUF1318) 1.8 4.7 1
TPP_enzyme_M Thiamine pyrophosphate enzyme, centra 1.7 6.4 1
5_3_exonuc_N 5'-3' exonuclease, N-terminal resolva 0.8 6.8 1
Sial-lect-inser Vibrio cholerae sialidase, lectin ins -0.5 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1887 1/1 1 42 [. 1 49 [. 2.0 1.5
5_3_exonuc_N 1/1 61 69 .. 1 9 [. 0.8 6.8
TFIID_90kDa 1/1 90 110 .. 132 152 .] 6.2 0.33
DUF1577 1/1 179 194 .. 392 407 .] 0.7 2.6
Sial-lect-inser 1/1 262 278 .. 123 139 .. -0.5 9.4
DUF1318 1/1 364 380 .. 1 18 [. 1.8 4.7
BcsB 1/1 366 387 .. 1 23 [. 0.7 3.9
TPP_enzyme_M 1/1 415 435 .. 131 150 .] 1.7 6.4
Alignments of top-scoring domains:
DUF1887: domain 1 of 1, from 1 to 42: score 2.0, E = 1.5
*->mdiHVgiidqdpvrlitPlLdkgvkpkkvvFigdesqdikekynrLh
m+ H +ii d lL k+ + Fi s+ i eky L+
gi|6792062 1 MKCHTCIIKED-------LLRKSCINAHFMFINPRSKVIMEKYSTLE 40
si<-*
i
gi|6792062 41 KI 42
5_3_exonuc_N: domain 1 of 1, from 61 to 69: score 0.8, E = 6.8
*->kkLlLiDGn<-*
+L+LiDGn
gi|6792062 61 TRLVLIDGN 69
TFIID_90kDa: domain 1 of 1, from 90 to 110: score 6.2, E = 0.33
*->EneqnggsiIikIlnqHlhiD<-*
+ +q g+++I kIl++H iD
gi|6792062 90 DQNQDGVEQISKILATHTNID 110
DUF1577: domain 1 of 1, from 179 to 194: score 0.7, E = 2.6
*->GielvgksdlPgerai<-*
G++++++sd+ g+ ++
gi|6792062 179 GANIAASSDRVGNALK 194
Sial-lect-inser: domain 1 of 1, from 262 to 278: score -0.5, E = 9.4
CS EE-S-EEEEEEE--TTS
*->EvsqEnniqFGnADAqi<-*
Evs Enn FG AD q+
gi|6792062 262 EVSIENNQPFGLADFQL 278
DUF1318: domain 1 of 1, from 364 to 380: score 1.8, E = 4.7
*->llsqsafAkltLdeAktq<-*
+ s+++ A ltL ++q
gi|6792062 364 DGSANVVA-LTLADTRSQ 380
BcsB: domain 1 of 1, from 366 to 387: score 0.7, E = 3.9
*->aadpasstrtltFrqLGapggpl<-*
a++++ t + t +qLG+ +gp+
gi|6792062 366 SANVVALTLADTRSQLGP-SGPI 387
TPP_enzyme_M: domain 1 of 1, from 415 to 435: score 1.7, E = 6.4
CS .. SSSEEEESSHHHHHHHHH
*->dp..pvdvpivGDakmevLeaL<-*
+p++ v v + GD++ e+L++L
gi|6792062 415 PPegGVSVTVTGDVA-ESLTQL 435
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