hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 73967432.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|73967432|ref|XP_856006.1|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor isoform 2 [Canis familiaris]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NUP Purine nucleoside permease (NUP) 1.5 2 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
PRD PRD domain 2.3 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
DUF1582 Protein of unknown function (DUF1582) 3.1 6.8 1
ETC_C1_NDUFA5 ETC complex I subunit conserved regio 1.9 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AMP_N 1/1 19 30 .. 1 12 [. 1.9 4.4
NUP 1/1 89 97 .. 1 9 [. 1.5 2
c-SKI_SMAD_bind 1/1 125 141 .. 82 98 .] 1.6 6.1
IFRD 1/1 126 137 .. 354 365 .] -0.2 6.5
ETC_C1_NDUFA5 1/1 129 142 .. 50 63 .] 1.9 8.6
PRD 1/1 130 142 .. 1 13 [. 2.3 6.3
TIR 1/1 177 192 .. 131 150 .] 0.9 5.4
DUF1582 1/1 224 241 .. 12 29 .] 3.1 6.8
Orthopox_N1 1/1 246 259 .. 100 113 .] 0.7 6.4
Alignments of top-scoring domains:
AMP_N: domain 1 of 1, from 19 to 30: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|7396743 19 VKAQTFAERRER 30
NUP: domain 1 of 1, from 89 to 97: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|7396743 89 VPPKVMLIS 97
c-SKI_SMAD_bind: domain 1 of 1, from 125 to 141: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|7396743 125 EHATFEDILEEIEKKLN 141
IFRD: domain 1 of 1, from 126 to 137: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|7396743 126 HATFEDILEEIE 137
ETC_C1_NDUFA5: domain 1 of 1, from 129 to 142: score 1.9, E = 8.6
*->yeedvekiEkkiga<-*
+e + e+iEkk++
gi|7396743 129 FEDILEEIEKKLNV 142
PRD: domain 1 of 1, from 130 to 142: score 2.3, E = 6.3
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl++
gi|7396743 130 EDILEEIEKKLNV 142
TIR: domain 1 of 1, from 177 to 192: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|7396743 177 EKEE----DMIHFWKRLSRL 192
DUF1582: domain 1 of 1, from 224 to 241: score 3.1, E = 6.8
*->arlstlsnCaqegekvla<-*
++l t+ +++ e+++ l
gi|7396743 224 RSLMTPYRVTFESPLELS 241
Orthopox_N1: domain 1 of 1, from 246 to 259: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|7396743 246 QMIETYFDFRLYRL 259
//