hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 73967434.fa
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Query sequence: gi|73967434|ref|XP_848409.1|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor isoform 1 [Canis familiaris]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 20.4 7.2e-05 2
UPF0547 Uncharacterised protein family UPF054 5.7 1.7 1
NUP Purine nucleoside permease (NUP) 1.5 2 1
TP1 Nuclear transition protein 1 3.4 2 1
Apo-CIII Apolipoprotein CIII (Apo-CIII) 3.2 2.1 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
PRD PRD domain 2.3 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
DUF1582 Protein of unknown function (DUF1582) 3.1 6.8 1
PSI Plexin repeat 1.7 7.6 1
ETC_C1_NDUFA5 ETC complex I subunit conserved regio 1.9 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Apo-CIII 1/1 98 120 .. 1 24 [. 3.2 2.1
PSI 1/1 157 170 .. 50 63 .] 1.7 7.6
UPF0547 1/1 167 177 .. 1 11 [. 5.7 1.7
IQ 1/2 231 249 .. 1 19 [. 12.6 0.015
TP1 1/1 248 268 .. 38 54 .] 3.4 2
IQ 2/2 254 268 .. 1 15 [. 7.8 0.4
AMP_N 1/1 276 287 .. 1 12 [. 1.9 4.4
NUP 1/1 346 354 .. 1 9 [. 1.5 2
c-SKI_SMAD_bind 1/1 382 398 .. 82 98 .] 1.6 6.1
IFRD 1/1 383 394 .. 354 365 .] -0.2 6.5
ETC_C1_NDUFA5 1/1 386 399 .. 50 63 .] 1.9 8.6
PRD 1/1 387 399 .. 1 13 [. 2.3 6.3
TIR 1/1 434 449 .. 131 150 .] 0.9 5.4
DUF1582 1/1 481 498 .. 12 29 .] 3.1 6.8
Orthopox_N1 1/1 503 516 .. 100 113 .] 0.7 6.4
Alignments of top-scoring domains:
Apo-CIII: domain 1 of 1, from 98 to 120: score 3.2, E = 2.1
*->MQPRvLLvvaLLaLLasArAeeae<-*
QPRv + + aLL s++Ae +e
gi|7396743 98 -QPRVYTISGEPALLPSPEAEAIE 120
PSI: domain 1 of 1, from 157 to 170: score 1.7, E = 7.6
CS ..B..TT-BCCCSS
*->dqwldwswsssqCp<-*
++w ++ + s+ Cp
gi|7396743 157 QSWAGSRQGSKECP 170
UPF0547: domain 1 of 1, from 167 to 177: score 5.7, E = 1.7
*->KtCPeCdaivp<-*
K+CP+C ++ p
gi|7396743 167 KECPGCAQLAP 177
IQ: domain 1 of 2, from 231 to 249: score 12.6, E = 0.015
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qa++RGy Rkr
gi|7396743 231 HTATTTMQAVFRGYAERKR 249
TP1: domain 1 of 1, from 248 to 268: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|7396743 248 KRRKRENDSAsviqRNFRKHL 268
IQ: domain 2 of 2, from 254 to 268: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|7396743 254 NDSASVIQRNFRKHL 268
AMP_N: domain 1 of 1, from 276 to 287: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|7396743 276 VKAQTFAERRER 287
NUP: domain 1 of 1, from 346 to 354: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|7396743 346 VPPKVMLIS 354
c-SKI_SMAD_bind: domain 1 of 1, from 382 to 398: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|7396743 382 EHATFEDILEEIEKKLN 398
IFRD: domain 1 of 1, from 383 to 394: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|7396743 383 HATFEDILEEIE 394
ETC_C1_NDUFA5: domain 1 of 1, from 386 to 399: score 1.9, E = 8.6
*->yeedvekiEkkiga<-*
+e + e+iEkk++
gi|7396743 386 FEDILEEIEKKLNV 399
PRD: domain 1 of 1, from 387 to 399: score 2.3, E = 6.3
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl++
gi|7396743 387 EDILEEIEKKLNV 399
TIR: domain 1 of 1, from 434 to 449: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|7396743 434 EKEE----DMIHFWKRLSRL 449
DUF1582: domain 1 of 1, from 481 to 498: score 3.1, E = 6.8
*->arlstlsnCaqegekvla<-*
++l t+ +++ e+++ l
gi|7396743 481 RSLMTPYRVTFESPLELS 498
Orthopox_N1: domain 1 of 1, from 503 to 516: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|7396743 503 QMIETYFDFRLYRL 516
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