hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 75906805.fa
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Query sequence: gi|75906805|ref|YP_321101.1|
Accession: [none]
Description: Integrins alpha chain [Anabaena variabilis ATCC 29413]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 178.1 4.7e-51 7
HemolysinCabind Hemolysin-type calcium-binding repeat 150.7 1.7e-44 11
He_PIG Putative Ig domain 47.2 1.3e-12 1
DAG1 Dystroglycan (Dystrophin-associated g 13.4 0.00062 1
DUF2190 Uncharacterized conserved protein (DU 7.3 0.14 1
Big_2 Bacterial Ig-like domain (group 2) 7.2 0.21 1
DUF2431 Domain of unknown function (DUF2431) 3.6 0.43 1
BA14K BA14K-like protein 6.1 0.93 1
FlaE Flagellar basal body protein FlaE 3.9 1.2 1
PKD PKD domain 3.8 1.2 1
PCP Peridinin-chlorophyll A binding prote 2.3 1.5 1
Levi_coat Levivirus coat protein 3.2 2.4 1
Dockerin_1 Dockerin type I repeat 4.6 2.9 4
MoaF Molybdenum cofactor biosynthesis prot 1.1 3.1 1
Gp5_C Gp5 C-terminal repeat (3 copies) 4.3 3.3 2
Trp_leader2 Tryptophan operon leader peptide 1.6 4.3 1
DUF1896 Domain of unknown function (DUF1896) 0.9 7 1
ETX_MTX2 Clostridium epsilon toxin ETX/Bacillu 0.6 7.1 1
UCH Ubiquitin carboxyl-terminal hydrolase -1.2 7.4 1
HSDR_N Type I restriction enzyme R protein N 0.1 9.3 1
DUF946 Plant protein of unknown function (DU -3.1 9.7 1
F420_oxidored NADP oxidoreductase coenzyme F420-dep 0.3 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UCH 1/1 106 114 .. 326 334 .] -1.2 7.4
FlaE 1/1 125 233 .. 29 102 .] 3.9 1.2
FG-GAP 1/7 196 226 .. 1 36 [] 26.7 8.2e-07
Dockerin_1 1/4 204 212 .. 1 9 [. 1.4 27
HSDR_N 1/1 240 260 .. 204 224 .] 0.1 9.3
FG-GAP 2/7 245 275 .. 1 36 [] 25.5 1.9e-06
FG-GAP 3/7 294 324 .. 1 36 [] 13.4 0.0065
Dockerin_1 2/4 302 310 .. 1 9 [. 0.7 45
FG-GAP 4/7 343 373 .. 1 36 [] 25.5 1.9e-06
Trp_leader2 1/1 348 369 .. 1 22 [. 1.6 4.3
Dockerin_1 3/4 351 359 .. 1 9 [. 0.5 53
DUF2431 1/1 372 384 .. 1 13 [. 3.6 0.43
MoaF 1/1 379 401 .. 261 283 .] 1.1 3.1
FG-GAP 5/7 392 422 .. 1 36 [] 23.3 8.1e-06
Levi_coat 1/1 440 466 .. 1 31 [. 3.2 2.4
FG-GAP 6/7 441 471 .. 1 36 [] 32.0 2.3e-08
Dockerin_1 4/4 449 455 .. 1 7 [. 2.0 19
FG-GAP 7/7 490 520 .. 1 36 [] 31.6 3e-08
DAG1 1/1 509 607 .. 1 107 [. 13.4 0.00062
DUF2190 1/1 553 568 .. 1 16 [. 7.3 0.14
He_PIG 1/1 564 611 .. 1 61 [] 47.2 1.3e-12
BA14K 1/1 580 591 .. 12 23 .. 6.1 0.93
Gp5_C 1/2 590 613 .. 1 24 [] 3.6 5.5
Big_2 1/1 595 618 .. 68 90 .] 7.2 0.21
PKD 1/1 595 622 .. 61 92 .] 3.8 1.2
ETX_MTX2 1/1 600 618 .. 260 278 .] 0.6 7.1
DUF946 1/1 613 626 .. 1 14 [. -3.1 9.7
HemolysinCabind 1/11 621 638 .. 1 18 [] 3.9 5.2
HemolysinCabind 2/11 666 678 .. 6 18 .] 3.6 6.5
HemolysinCabind 3/11 680 689 .. 9 18 .] 0.2 69
DUF1896 1/1 705 716 .. 136 147 .] 0.9 7
F420_oxidored 1/1 722 731 .. 1 10 [. 0.3 9.7
HemolysinCabind 4/11 726 743 .. 1 18 [] 23.9 4.6e-06
HemolysinCabind 5/11 744 761 .. 1 18 [] 16.9 0.00059
HemolysinCabind 6/11 762 779 .. 1 18 [] 20.0 7e-05
HemolysinCabind 7/11 780 797 .. 1 18 [] 12.7 0.011
HemolysinCabind 8/11 833 850 .. 1 18 [] 5.6 1.6
HemolysinCabind 9/11 851 868 .. 1 18 [] 19.8 7.7e-05
Gp5_C 2/2 855 878 .. 1 24 [] 0.7 43
HemolysinCabind 10/11 869 886 .. 1 18 [] 20.4 5.2e-05
HemolysinCabind 11/11 887 904 .. 1 18 [] 23.8 4.8e-06
PCP 1/1 937 946 .. 143 152 .] 2.3 1.5
Alignments of top-scoring domains:
UCH: domain 1 of 1, from 106 to 114: score -1.2, E = 7.4
CS CEEEEEEEE
RF xxxxxxxxx
*->srsAYiLFY<-*
s++A iL+Y
gi|7590680 106 STNAEILLY 114
FlaE: domain 1 of 1, from 125 to 233: score 3.9, E = 1.2
*->vyFvK........eapnsttgd......ntWtvtvydtdd.......
++Fv++ ++ ++ ++++st+ ++++++ W ++ ++++ ++++
gi|7590680 125 MEFVRqlhqltgaNVAASTDKVgssqqgGSW--ELDINVGhisttsa 169
.............LtFDsnG.....ttitsanvggaapvsitLdl.lTqf
++ + ++ ++FD++ + + ++ +++++vg+++++ +Ldl ++f
gi|7590680 170 ittavqitypsvlVSFDPATnfgvgSAPFIPTVGDFNNDG-KLDLaVSNF 218
agstfstvsavsa.Q.DGy<-*
+ s+ +v +Q++G+
gi|7590680 219 N-SN---NVSVLLgQgNGS 233
FG-GAP: domain 1 of 7, from 196 to 226: score 26.7, E = 8.2e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+n+DG+ Dl+v ++ ++++v++l
gi|7590680 196 APFIPTVGDFNNDGKLDLAV-------SNfNsNNVSVL 226
Dockerin_1: domain 1 of 4, from 204 to 212: score 1.4, E = 27
CS -TT-SS--S
*->DvNgDGkVn<-*
D N+DGk +
gi|7590680 204 DFNNDGKLD 212
HSDR_N: domain 1 of 1, from 240 to 260: score 0.1, E = 9.3
*->fgvisNGdetrfydltageer<-*
fgv+ N + +r++d +++++
gi|7590680 240 FGVALNPISVRIGDFNNDGNL 260
FG-GAP: domain 2 of 7, from 245 to 275: score 25.5, E = 1.9e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++ sv++gD+n+DG Dl+v + ++++v++l
gi|7590680 245 NPISVRIGDFNNDGNLDLAV-------VNfNsSNVSIL 275
FG-GAP: domain 3 of 7, from 294 to 324: score 13.4, E = 0.0065
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++++a+ Dln+DG Dlv +++++++v++l
gi|7590680 294 APQGLALQDLNNDGNLDLVS-------ANsGgNNVSVL 324
Dockerin_1: domain 2 of 4, from 302 to 310: score 0.7, E = 45
CS -TT-SS--S
*->DvNgDGkVn<-*
D+N+DG+ +
gi|7590680 302 DLNNDGNLD 310
FG-GAP: domain 4 of 7, from 343 to 373: score 25.5, E = 1.9e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
f++sv++ D+n DG+ Dl+v ++++++++++l
gi|7590680 343 FPRSVVIRDFNKDGKLDLAV-------SNdSsNTISIL 373
Trp_leader2: domain 1 of 1, from 348 to 369: score 1.6, E = 4.3
*->mLqEFnqnqKAKlAlhlekvna<-*
++ +Fn+ K lA+ ++ n+
gi|7590680 348 VIRDFNKDGKLDLAVSNDSSNT 369
Dockerin_1: domain 3 of 4, from 351 to 359: score 0.5, E = 53
CS -TT-SS--S
*->DvNgDGkVn<-*
D N+DGk +
gi|7590680 351 DFNKDGKLD 359
DUF2431: domain 1 of 1, from 372 to 384: score 3.6, E = 0.43
*->LLVGEGDFSFalS<-*
L+GEG+ SF +
gi|7590680 372 ILIGEGNGSFGTA 384
MoaF: domain 1 of 1, from 379 to 401: score 1.1, E = 3.1
*->gDFgalvNFpvGAyarvLneTrH<-*
g+Fg+++NF+vG++ L++
gi|7590680 379 GSFGTATNFAVGSLPLTLGVGDF 401
FG-GAP: domain 5 of 7, from 392 to 422: score 23.3, E = 8.1e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ ++++gD+nGD Dlvv +++++++v++l
gi|7590680 392 LPLTLGVGDFNGDNNLDLVV-------ANrGsNNVSVL 422
Levi_coat: domain 1 of 1, from 440 to 466: score 3.2, E = 2.4
CS BS--EEEEECTTTS-EEEEEEEEEEECCCCE
*->AkLqnlVLvdiGgtGNvTvvlpPRGvnpaNG<-*
A+ +++V d g+G++ +++ +n N+
gi|7590680 440 ANPRSVVVADFNGDGKQDLAV----SNQSNN 466
FG-GAP: domain 6 of 7, from 441 to 471: score 32.0, E = 2.3e-08
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++sv+++D+nGDG+ Dl+v +++++++v++l
gi|7590680 441 NPRSVVVADFNGDGKQDLAV-------SNqSnNNVSIL 471
Dockerin_1: domain 4 of 4, from 449 to 455: score 2.0, E = 19
CS -TT-SS-
*->DvNgDGk<-*
D NgDGk
gi|7590680 449 DFNGDGK 455
FG-GAP: domain 7 of 7, from 490 to 520: score 31.6, E = 3e-08
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++s+a+gD+n DG+pDl+v ++++++v++l
gi|7590680 490 GPYSLAFGDFNSDGKPDLAV-------TNqNsNNVSIL 520
DAG1: domain 1 of 1, from 509 to 607: score 13.4, E = 0.00062
CS XXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXX
*->wenqlEasmhsvlsdikEavavvaavsqpsglpdssavvGraFrlhv
+ nq + +l + ++ + + + + G aF +++
gi|7590680 509 VTNQNSNNVSILLNTTSFSFPPTV----ANPITNQTGTTGTAFNFQI 551
CS XXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXXXXXXXXX
ptellassedqGiikiseadKdgheLkapswLhwdadsrtLqGLPLdtDK
p +++ + +d ++ +++ +g L pswL ++ +t G P
gi|7590680 552 PANTFSDPGD--TLTYTATLGNGEPL--PSWLSFNPATGTFTGNPTKNNV 597
CS XXXXXXXXXX
GVhyIsVSrl<-*
G I V ++
gi|7590680 598 GSLTIKVTAT 607
DUF2190: domain 1 of 1, from 553 to 568: score 7.3, E = 0.14
*->MKNYvQpGkTItvtAa<-*
++++ pG+T+t+tA+
gi|7590680 553 ANTFSDPGDTLTYTAT 568
He_PIG: domain 1 of 1, from 564 to 611: score 47.2, E = 1.3e-12
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
tyt+ t+ g +LPs+L+++++tG++tG Pt++ +
gi|7590680 564 TYTA------------TLGNGEPLPSWLSFNPATGTFTGNPTKNNV- 597
Gsytftvtatdgsg<-*
Gs t+ vtatd+ +
gi|7590680 598 GSLTIKVTATDTTN 611
BA14K: domain 1 of 1, from 580 to 591: score 6.1, E = 0.93
*->SYdPrdnTyqgy<-*
S++P+++T++g+
gi|7590680 580 SFNPATGTFTGN 591
Gp5_C: domain 1 of 2, from 590 to 613: score 3.6, E = 5.5
CS S-EEEEESS-EEEEESSEEEEEES
*->GnesltVkGnrtvtVgGnqTtsVg<-*
Gn + ++ G+ t+ V + Tt+++
gi|7590680 590 GNPTKNNVGSLTIKVTATDTTNLS 613
Big_2: domain 1 of 1, from 595 to 618: score 7.2, E = 0.21
CS -SSS-EEEEEEETT .TEEEEEEE
*->lakGtatItatsgd.gnksasvtv<-*
+++G+ tI++t+ d++n s++ t+
gi|7590680 595 NNVGSLTIKVTATDtTNLSVETTF 618
PKD: domain 1 of 1, from 595 to 622: score 3.8, E = 1.2
CS SS....SEEEEEEEEEEETTCEEEEEEEEEEE
*->skgsVtpGtYtVtLtvsngvgsasattttvtV<-*
++ +G+ t+++t+++ ++++ tt ++ V
gi|7590680 595 NN----VGSLTIKVTATDTTNLSVETTFNLSV 622
ETX_MTX2: domain 1 of 1, from 600 to 618: score 0.6, E = 7.1
CS EEEEEEETTT-EEEEEEE-
*->ftvkvtetplsnvsgesie<-*
+t+kvt t++ n+s e+++
gi|7590680 600 LTIKVTATDTTNLSVETTF 618
DUF946: domain 1 of 1, from 613 to 626: score -3.1, E = 9.7
*->pepetFslPspLPs<-*
++++tF+l+ LP+
gi|7590680 613 SVETTFNLSVGLPD 626
HemolysinCabind: domain 1 of 11, from 621 to 638: score 3.9, E = 5.2
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G +++++G++ n+t+
gi|7590680 621 SVGLPDNIINGNGSNNTF 638
HemolysinCabind: domain 2 of 11, from 666 to 678: score 3.6, E = 6.5
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
nD+ +Gg+G D +
gi|7590680 666 NDSFDGGDGRDAI 678
HemolysinCabind: domain 3 of 11, from 680 to 689: score 0.2, E = 69
CS EEEESSCGEE
*->LyGgaGnDtl<-*
+ Gga Dt+
gi|7590680 680 IQGGANTDTI 689
DUF1896: domain 1 of 1, from 705 to 716: score 0.9, E = 7
CS HHHHHHHHTT--
*->GtivlllEeygl<-*
Gt+ +++E ++l
gi|7590680 705 GTTITNIETFDL 716
F420_oxidored: domain 1 of 1, from 722 to 731: score 0.3, E = 9.7
CS EEEEETTTSH
*->kIGiIGGaGn<-*
++ +IGG+Gn
gi|7590680 722 TVTFIGGSGN 731
HemolysinCabind: domain 4 of 11, from 726 to 743: score 23.9, E = 4.6e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnDt+yGgaG+D l
gi|7590680 726 IGGSGNDTIYGGAGDDNL 743
HemolysinCabind: domain 5 of 11, from 744 to 761: score 16.9, E = 0.00059
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+aG+D L+GgaG+Dtl
gi|7590680 744 NGDAGDDNLNGGAGDDTL 761
HemolysinCabind: domain 6 of 11, from 762 to 779: score 20.0, E = 7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnD+L+Gg+G +tl
gi|7590680 762 IGGDGNDILTGGSGTNTL 779
HemolysinCabind: domain 7 of 11, from 780 to 797: score 12.7, E = 0.011
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaGnD+ y ++ D++
gi|7590680 780 TGGAGNDRYYIDNASDVI 797
HemolysinCabind: domain 8 of 11, from 833 to 850: score 5.6, E = 1.6
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+a n+ ++G++ +++l
gi|7590680 833 TGNASNNNIRGNNQDNLL 850
HemolysinCabind: domain 9 of 11, from 851 to 868: score 19.8, E = 7.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnD L+G+aGnD+l
gi|7590680 851 EGLDGNDNLTGNAGNDVL 868
Gp5_C: domain 2 of 2, from 855 to 878: score 0.7, E = 43
CS S-EEEEESS-EEEEESSEEEEEES
*->GnesltVkGnrtvtVgGnqTtsVg<-*
Gn++lt ++ v++gGn +++
gi|7590680 855 GNDNLTGNAGNDVLIGGNGNDTLN 878
HemolysinCabind: domain 10 of 11, from 869 to 886: score 20.4, E = 5.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnDtL+Gg GnD+l
gi|7590680 869 IGGNGNDTLNGGIGNDVL 886
HemolysinCabind: domain 11 of 11, from 887 to 904: score 23.8, E = 4.8e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaG D+L+Gg+G+Dt+
gi|7590680 887 IGGAGSDRLFGGDGADTF 904
PCP: domain 1 of 1, from 937 to 946: score 2.3, E = 1.5
CS HHHHHHHHHH
*->egFlAltsaV<-*
++F Alts+V
gi|7590680 937 ASFSALTSVV 946
//