hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 77959415.fa
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Query sequence: gi|77959415|ref|ZP_00823435.1|
Accession: [none]
Description: COG2931: RTX toxins and related Ca2+-binding proteins [Yersinia bercovieri ATCC 43970]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 22.7 1e-05 3
Thg1 tRNAHis guanylyltransferase 5.6 0.093 1
Ribosomal_L27 Ribosomal L27 protein 3.8 2.1 1
DUF957 Enterobacterial protein of unknown fu 3.5 2.5 1
DUF1028 Family of unknown function (DUF1028) 1.6 2.6 1
SmpB SmpB protein 3.1 3.3 1
DUF1414 Protein of unknown function (DUF1414) 3.4 4.4 1
HAS-barrel HAS barrel domain 2.8 4.5 1
Phycobilisome Phycobilisome protein 1.6 4.7 1
AzlC AzlC protein 2.2 4.8 1
SMC_hinge SMC proteins Flexible Hinge Domain 1.9 5.4 1
CRPV_capsid CRPV capsid protein like 0.6 5.7 1
DUF1970 Domain of unknown function (DUF1970) 0.0 5.8 1
Triabin Triabin 1.2 5.8 1
MmgE_PrpD MmgE/PrpD family 0.5 6 1
TYA TYA transposon protein 1.7 6.1 1
MoaE MoaE protein 2.3 6.9 1
DUF1557 Protein of unknown function (DUF1557) -0.1 7.5 1
LpxC UDP-3-O-acyl N-acetylglycosamine deac 0.7 8.1 1
Sperm_act_pep Sperm-activating peptides 4.0 8.5 1
GATase Glutamine amidotransferase class-I 0.5 8.6 1
Pox_F12L Poxvirus F12L protein -1.0 9 1
MgtE_N MgtE intracellular N domain 1.2 9.2 1
ArgJ ArgJ family -0.3 9.6 1
MIF4G_like MIF4G like 0.4 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Phycobilisome 1/1 17 29 .. 1 13 [. 1.6 4.7
ArgJ 1/1 26 31 .. 399 404 .] -0.3 9.6
MoaE 1/1 50 57 .. 116 123 .] 2.3 6.9
Thg1 1/1 197 206 .. 1 11 [. 5.6 0.093
LpxC 1/1 310 323 .. 274 287 .] 0.7 8.1
DUF957 1/1 346 364 .. 47 67 .] 3.5 2.5
MIF4G_like 1/1 422 430 .. 201 209 .] 0.4 9.7
MmgE_PrpD 1/1 447 463 .. 1 17 [. 0.5 6
Triabin 1/1 534 545 .. 118 129 .. 1.2 5.8
SmpB 1/1 582 592 .. 1 13 [. 3.1 3.3
SMC_hinge 1/1 626 641 .. 109 124 .] 1.9 5.4
HemolysinCabind 1/3 643 652 .. 9 18 .] 6.1 1.2
HemolysinCabind 2/3 700 712 .. 6 18 .] 2.3 15
HemolysinCabind 3/3 713 730 .. 1 18 [] 14.3 0.0036
DUF1970 1/1 727 736 .. 108 117 .] 0.0 5.8
DUF1028 1/1 731 741 .. 147 157 .. 1.6 2.6
Sperm_act_pep 1/1 735 744 .. 1 10 [] 4.0 8.5
DUF1557 1/1 743 773 .. 1 31 [. -0.1 7.5
CRPV_capsid 1/1 774 790 .. 1 18 [. 0.6 5.7
Ribosomal_L27 1/1 884 898 .. 66 82 .] 3.8 2.1
Pox_F12L 1/1 922 937 .. 297 313 .. -1.0 9
TYA 1/1 923 935 .. 86 98 .] 1.7 6.1
AzlC 1/1 927 935 .. 1 9 [. 2.2 4.8
GATase 1/1 978 985 .. 1 8 [. 0.5 8.6
HAS-barrel 1/1 983 1018 .. 76 110 .] 2.8 4.5
MgtE_N 1/1 1089 1109 .. 1 21 [. 1.2 9.2
DUF1414 1/1 1097 1121 .. 20 44 .] 3.4 4.4
Alignments of top-scoring domains:
Phycobilisome: domain 1 of 1, from 17 to 29: score 1.6, E = 4.7
CS HHHHHHHHGGT--
*->TkviaaADaeGrY<-*
T+vi++ Da G Y
gi|7795941 17 TSVIVQLDANGSY 29
ArgJ: domain 1 of 1, from 26 to 31: score -0.3, E = 9.6
CS HCCS--
*->NAdYRT<-*
N++YRT
gi|7795941 26 NGSYRT 31
MoaE: domain 1 of 1, from 50 to 57: score 2.3, E = 6.9
CS HHHHHHSS
*->IDelKkrv<-*
ID+lK+rv
gi|7795941 50 IDLLKQRV 57
Thg1: domain 1 of 1, from 197 to 206: score 5.6, E = 0.093
*->MAkSkFeYVkq<-*
AkSkFeY+++
gi|7795941 197 -AKSKFEYHEN 206
LpxC: domain 1 of 1, from 310 to 323: score 0.7, E = 8.1
CS HHHHHHHHHHHHTT
*->lNnqLvkkiladqk<-*
lN++L++ +l+ k
gi|7795941 310 LNSKLGQGLLKHSK 323
DUF957: domain 1 of 1, from 346 to 364: score 3.5, E = 2.5
*->karavlrklaslsSekvhaer<-*
+a +++kla +s +h++r
gi|7795941 346 QAYNAFSKLAVES--DSHSQR 364
MIF4G_like: domain 1 of 1, from 422 to 430: score 0.4, E = 9.7
*->dRIketLPD<-*
+RI++ LP+
gi|7795941 422 ERIRDILPE 430
MmgE_PrpD: domain 1 of 1, from 447 to 463: score 0.5, E = 6
CS HHHHHHHHHHHH-----
*->dsvteqlAdyvasvrys<-*
++vte++A++v++ ++
gi|7795941 447 MPVTEDIANKVNAKNAQ 463
Triabin: domain 1 of 1, from 534 to 545: score 1.2, E = 5.8
CS EEEEE-TTSEEE
*->sViaTDYkNYAL<-*
s iaT YkNY L
gi|7795941 534 SLIATEYKNYSL 545
SmpB: domain 1 of 1, from 582 to 592: score 3.1, E = 3.3
CS -EEEEEE-CHHHT
*->kviPianNKKArh<-*
kv+ a+NK A +
gi|7795941 582 KVL--AQNKAALF 592
SMC_hinge: domain 1 of 1, from 626 to 641: score 1.9, E = 5.4
CS TTEEEESSHHHHHHHH
*->gqtlvVedldeArrla<-*
++t++ +++d+++r++
gi|7795941 626 SDTFIFNNPDIGERVS 641
HemolysinCabind: domain 1 of 3, from 643 to 652: score 6.1, E = 1.2
CS EEEESSCGEE
*->LyGgaGnDtl<-*
L+Gg+G Dt+
gi|7795941 643 LDGGEGSDTI 652
HemolysinCabind: domain 2 of 3, from 700 to 712: score 2.3, E = 15
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
nDt++G++ ++ l
gi|7795941 700 NDTINGNNQDNYL 712
HemolysinCabind: domain 3 of 3, from 713 to 730: score 14.3, E = 0.0036
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G Dt++G +GnD +
gi|7795941 713 NGLGGKDTIFGYGGNDFI 730
DUF1970: domain 1 of 1, from 727 to 736: score 0.0, E = 5.8
*->nDYLAsqAGv<-*
nD++A qAG
gi|7795941 727 NDFIALQAGF 736
DUF1028: domain 1 of 1, from 731 to 741: score 1.6, E = 2.6
*->ALeAGqaAGGD<-*
AL+AG aAGGD
gi|7795941 731 ALQAGFAAGGD 741
Sperm_act_pep: domain 1 of 1, from 735 to 744: score 4.0, E = 8.5
*->GFsLgGgGVg<-*
GF+ gG G++
gi|7795941 735 GFAAGGDGID 744
DUF1557: domain 1 of 1, from 743 to 773: score -0.1, E = 7.5
*->letseltpnqlaavvsKilAeenysLstqse<-*
++t + n v+ i Ae+ sL+++ e
gi|7795941 743 IDTYHILQNSTEKTVEVIIAESSESLTSRTE 773
CRPV_capsid: domain 1 of 1, from 774 to 790: score 0.6, E = 5.7
*->tpNaslGlisGEkvtSLR<-*
t N++l s E++tSLR
gi|7795941 774 TSNILL-DYSVEQITSLR 790
Ribosomal_L27: domain 1 of 1, from 884 to 898: score 3.8, E = 2.1
*->VkFekkgsrnrKfvsvv<-*
V+Fe +g +K +sv
gi|7795941 884 VRFELDG--EKKGHSVT 898
Pox_F12L: domain 1 of 1, from 922 to 937: score -1.0, E = 9
CS XXXXXXXXXXXXXX.XX
*->SslFDlplLeeywpRkd<-*
+s++D+p+L+ y p ++
gi|7795941 922 LSVYDMPILMGYLP-NY 937
TYA: domain 1 of 1, from 923 to 935: score 1.7, E = 6.1
*->avYghPsmMpysp<-*
+vY P +M y p
gi|7795941 923 SVYDMPILMGYLP 935
AzlC: domain 1 of 1, from 927 to 935: score 2.2, E = 4.8
*->lPilLGyiP<-*
+Pil+Gy+P
gi|7795941 927 MPILMGYLP 935
GATase: domain 1 of 1, from 978 to 985: score 0.5, E = 8.6
CS EEEESSSS
*->lliDngdS<-*
++iDn+dS
gi|7795941 978 IVIDNYDS 985
HAS-barrel: domain 1 of 1, from 983 to 1018: score 2.8, E = 4.5
*->lnlvlslkeieesngdiegvvatept.vkvlGkvkr<-*
++ ++ ++ +++++++ + +vat++++ ++l+++++
gi|7795941 983 YDSEQAIDTLIFEGVEAYEFVATADEqDVILTHREK 1018
MgtE_N: domain 1 of 1, from 1089 to 1109: score 1.2, E = 9.2
*->lhpaDiAelLeeLppeerlll<-*
h + + el+ ++p er+++
gi|7795941 1089 THLVQLSELMASMPVTERIAV 1109
DUF1414: domain 1 of 1, from 1097 to 1121: score 3.4, E = 4.4
*->lnqqVpaeqRqaiAekFakALlqSV<-*
l+++ p++ R+a+++++ + L++S
gi|7795941 1097 LMASMPVTERIAVSDNYHQGLKNSG 1121
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