hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 77960583.fa
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Query sequence: gi|77960583|ref|ZP_00824448.1|
Accession: [none]
Description: COG2931: RTX toxins and related Ca2+-binding proteins [Yersinia mollaretii ATCC 43969]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ehrlichia_rpt Ehrlichia tandem repeat (Ehrlichia_rp 4.6 0.038 1
Pox_G5 Poxvirus G5 protein 2.7 0.19 1
PilS PilS N terminal 4.2 0.77 1
Herpes_UL36 Herpesvirus UL36 tegument protein 4.1 0.99 1
Pro-kuma_activ Pro-kumamolisin, activation domain 4.7 1.1 1
Dirigent Dirigent-like protein 3.3 1.3 1
DUF456 Protein of unknown function (DUF456) 4.2 1.7 1
TFIID_90kDa WD40 associated region in TFIID subun 3.6 1.8 1
DUF1292 Protein of unknown function (DUF1292) 3.8 2 1
TspO_MBR TspO/MBR family 2.9 2.1 1
RIP Ribosome inactivating protein 2.1 2.3 1
CT20 CT20 family 2.2 2.5 1
MAPEG MAPEG family 2.9 2.7 1
DUF1155 Protein of unknown function (DUF1155) 2.9 3.1 2
RimK RimK-like ATP-grasp domain 2.6 3.3 1
McrBC McrBC 5-methylcytosine restriction sy 0.1 3.4 1
Plasmod_MYXSPDY Plasmodium repeat_MYXSPDY 4.5 3.6 1
DUF1751 Eukaryotic integral membrane protein 2.5 3.7 1
DUF2366 Uncharacterised conserved protein (DU 1.7 4.2 1
DUF1200 Protein of unknown function (DUF1200) 3.0 4.7 1
Colipase Colipase, N-terminal domain 2.8 5.7 1
FIST_C FIST C domain 1.8 6 1
Rapamycin_bind Rapamycin binding domain 1.2 6.7 1
Autotransporter Autotransporter beta-domain 0.9 7 1
DUF2224 Uncharacterized conserved protein (DU -0.3 7.5 1
ATP-synt_ab_N ATP synthase alpha/beta family, beta- 1.8 7.6 1
DFP DNA / pantothenate metabolism flavopr 0.3 7.6 1
DUF1880 Domain of unknown function (DUF1880) -1.3 8.1 1
TrmE_N GTP-binding protein TrmE N-terminus 0.9 8.2 1
Clathrin_propel Clathrin propeller repeat 3.3 8.4 1
Nup133_N Nup133 N terminal like -1.0 8.5 1
Serinc Serine incorporator (Serinc) -1.4 8.7 1
TraQ Type-F conjugative transfer system pi 0.4 8.7 1
PngaseF_N Peptide-N-glycosidase F, N terminal -0.1 8.9 1
DUF1776 Fungal family of unknown function (DU 0.0 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Colipase 1/1 31 48 .. 1 19 [. 2.8 5.7
Rapamycin_bind 1/1 124 131 .. 93 100 .] 1.2 6.7
TrmE_N 1/1 190 197 .. 133 140 .] 0.9 8.2
TraQ 1/1 232 242 .. 1 11 [. 0.4 8.7
DUF1292 1/1 339 351 .. 1 13 [. 3.8 2
DFP 1/1 342 362 .. 260 279 .] 0.3 7.6
FIST_C 1/1 364 373 .. 133 142 .] 1.8 6
DUF1155 1/2 374 386 .. 1 13 [. 2.2 5
Dirigent 1/1 391 413 .. 158 183 .] 3.3 1.3
Pro-kuma_activ 1/1 432 448 .. 131 147 .] 4.7 1.1
McrBC 1/1 433 443 .. 1 11 [. 0.1 3.4
DUF456 1/1 486 496 .. 1 11 [. 4.2 1.7
RimK 1/1 520 543 .. 186 209 .] 2.6 3.3
DUF1751 1/1 529 565 .. 58 93 .. 2.5 3.7
TspO_MBR 1/1 531 549 .. 1 19 [. 2.9 2.1
MAPEG 1/1 546 567 .. 134 155 .] 2.9 2.7
CT20 1/1 683 703 .. 1 25 [. 2.2 2.5
DUF2224 1/1 733 742 .. 539 548 .] -0.3 7.5
Herpes_UL36 1/1 812 825 .. 1 14 [. 4.1 0.99
ATP-synt_ab_N 1/1 846 854 .. 61 69 .] 1.8 7.6
Clathrin_propel 1/1 856 890 .. 1 43 [] 3.3 8.4
PilS 1/1 857 867 .. 151 161 .] 4.2 0.77
Autotransporter 1/1 876 911 .. 257 296 .] 0.9 7
DUF1880 1/1 974 981 .. 1 8 [. -1.3 8.1
DUF1776 1/1 978 992 .. 1 15 [. 0.0 9.4
DUF1155 2/2 1033 1046 .. 29 42 .] 0.7 14
Nup133_N 1/1 1160 1187 .. 470 498 .] -1.0 8.5
DUF1200 1/1 1196 1208 .. 47 61 .. 3.0 4.7
RIP 1/1 1205 1227 .. 279 303 .] 2.1 2.3
Pox_G5 1/1 1216 1258 .. 368 415 .. 2.7 0.19
Ehrlichia_rpt 1/1 1222 1234 .. 692 707 .] 4.6 0.038
TFIID_90kDa 1/1 1241 1255 .. 138 152 .] 3.6 1.8
Serinc 1/1 1305 1311 .. 479 485 .] -1.4 8.7
DUF2366 1/1 1353 1362 .. 165 174 .] 1.7 4.2
PngaseF_N 1/1 1385 1399 .. 123 137 .] -0.1 8.9
Plasmod_MYXSPDY 1/1 1393 1409 .. 1 17 [] 4.5 3.6
Alignments of top-scoring domains:
Colipase: domain 1 of 1, from 31 to 48: score 2.8, E = 5.7
CS ----SSSB-TTSB-SSGGG
*->PRGiiinLedGElClnsaq<-*
+ +ii+L+ E C+ saq
gi|7796058 31 -KQLIIQLQGDETCFKSAQ 48
Rapamycin_bind: domain 1 of 1, from 124 to 131: score 1.2, E = 6.7
CS HHHHHT--
*->VFrrIdkQ<-*
VF +I+kQ
gi|7796058 124 VFDKISKQ 131
TrmE_N: domain 1 of 1, from 190 to 197: score 0.9, E = 8.2
CS HHHHHTTS
*->rRAFLNGK<-*
+RA +NGK
gi|7796058 190 LRAVENGK 197
TraQ: domain 1 of 1, from 232 to 242: score 0.4, E = 8.7
*->mrKfrfsLPel<-*
+ K+++sLPe+
gi|7796058 232 LVKRKLSLPEI 242
DUF1292: domain 1 of 1, from 339 to 351: score 3.8, E = 2
*->EeGnEvlFevlft<-*
E+G+EvlF + t
gi|7796058 339 EQGHEVLFIHEST 351
DFP: domain 1 of 1, from 342 to 362: score 0.3, E = 7.6
*->nrViiVs.nksevelvllskk<-*
++V+++ + e+ +++++k+
gi|7796058 342 HEVLFIHeSTGEKKWINTEKE 362
FIST_C: domain 1 of 1, from 364 to 373: score 1.8, E = 6
*->FftyGEigpg<-*
F t+GE++
gi|7796058 364 FHTFGEQYQT 373
DUF1155: domain 1 of 2, from 374 to 386: score 2.2, E = 5
*->msAtLsttLsFEP<-*
+ Ls tLsF+P
gi|7796058 374 LTTQLSNTLSFDP 386
Dirigent: domain 1 of 1, from 391 to 413: score 3.3, E = 1.3
*->AtvkTlhqdlteGdayfrynsvdikl<-*
At+k+ +++eGda++ +n +++
gi|7796058 391 ATAKP---NVFEGDAVHTLNAAFLLQ 413
Pro-kuma_activ: domain 1 of 1, from 432 to 448: score 4.7, E = 1.1
*->PaeLadhVdaVlGLdnf<-*
P L+++V+++++++ +
gi|7796058 432 PMQLQNYVGLIQPTIGL 448
McrBC: domain 1 of 1, from 433 to 443: score 0.1, E = 3.4
*->LkagnYVGvir<-*
+++nYVG i+
gi|7796058 433 MQLQNYVGLIQ 443
DUF456: domain 1 of 1, from 486 to 496: score 4.2, E = 1.7
*->lilPaLPGill<-*
+++PaLPG+ll
gi|7796058 486 SVMPALPGLLL 496
RimK: domain 1 of 1, from 520 to 543: score 2.6, E = 3.3
*->sspglkgierttGiniAkklieyi<-*
+s l++++ ttG+n+A+ i
gi|7796058 520 ASTNLTMATLTTGVNVAALVTSFI 543
DUF1751: domain 1 of 1, from 529 to 565: score 2.5, E = 3.7
*->vnvitNLlvflyylllymitrsery.LdgvpisGgyg<-*
+++++N+ ++++ ++ +++ +s++ +L++vp++G ++
gi|7796058 529 LTTGVNVAALVTSFIPAAAGASAVLgLVAVPLAGIAA 565
TspO_MBR: domain 1 of 1, from 531 to 549: score 2.9, E = 2.1
*->wqvtrlalvafliacalag<-*
++v+++alv+++i++a+++
gi|7796058 531 TGVNVAALVTSFIPAAAGA 549
MAPEG: domain 1 of 1, from 546 to 567: score 2.9, E = 2.7
*->algslilllLlllallgilnhl<-*
a+g+++ l+L+++ l+gi+++l
gi|7796058 546 AAGASAVLGLVAVPLAGIAAGL 567
CT20: domain 1 of 1, from 683 to 703: score 2.2, E = 2.5
*->eeElrLfkaicRgfKPvKLkGIhkH<-*
+ + L++a + ++ P+ GI+kH
gi|7796058 683 QQPVELSQAQL-FYLPS---GINKH 703
DUF2224: domain 1 of 1, from 733 to 742: score -0.3, E = 7.5
*->sLkefdklVd<-*
+L +f+++V+
gi|7796058 733 FLWHFNAFVS 742
Herpes_UL36: domain 1 of 1, from 812 to 825: score 4.1, E = 0.99
*->rseerWlsdikAaL<-*
+s e+W+ di+++L
gi|7796058 812 ASDEHWTIDIESVL 825
ATP-synt_ab_N: domain 1 of 1, from 846 to 854: score 1.8, E = 7.6
CS TTTEEEEEE
*->rGdeVkdTG<-*
rG+++++TG
gi|7796058 846 RGMTITRTG 854
Clathrin_propel: domain 1 of 1, from 856 to 890: score 3.3, E = 8.4
CS EECCEEEEEEEEEEEEEEEEEEEEEE.EETCECEEEEEEEETT
*->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-*
+ ++i f++ +++k +l+i +l+ g ++v+++
gi|7796058 856 TIGAQTIAFTS---NPPKQVLLIA-----KLDESGVSLGVNVN 890
PilS: domain 1 of 1, from 857 to 867: score 4.2, E = 0.77
*->tGtNTltfTsn<-*
+G+ T++fTsn
gi|7796058 857 IGAQTIAFTSN 867
Autotransporter: domain 1 of 1, from 876 to 911: score 0.9, E = 7
CS ---EEEEEEEEEEEEECTTEEEEEEEEEE....TTEEEEE
*->tpldrtalslgaGlelklgsnlslflnysaefgsqlsdng<-*
++ld +slg++++l+ g++ s+ ++y + +++ +
gi|7796058 876 AKLDESGVSLGVNVNLESGKQQSFLISYH----DNGDSLK 911
DUF1880: domain 1 of 1, from 974 to 981: score -1.3, E = 8.1
*->vqiLtDEq<-*
vqiL Eq
gi|7796058 974 VQILANEQ 981
DUF1776: domain 1 of 1, from 978 to 992: score 0.0, E = 9.4
*->artqVVlvaGSmtdP<-*
a q +l+aGS++ P
gi|7796058 978 ANEQHILLAGSINLP 992
DUF1155: domain 2 of 2, from 1033 to 1046: score 0.7, E = 14
*->mDFrkktllrgyes<-*
m F+ ++l+ +++s
gi|7796058 1033 MTFETNKLINWLNS 1046
Nup133_N: domain 1 of 1, from 1160 to 1187: score -1.0, E = 8.5
*->nanpalylltrnsGvvrIeHaleedstne<-*
++++++++ t +sG ++ + e d+++e
gi|7796058 1160 SRYSTVFIQTSESGSLTLT-LNETDFFKE 1187
DUF1200: domain 1 of 1, from 1196 to 1208: score 3.0, E = 4.7
*->LeIrYktGkygtIlI<-*
L+I+Y Gk+++I+I
gi|7796058 1196 LVIQY--GKSSIIKI 1208
RIP: domain 1 of 1, from 1205 to 1227: score 2.1, E = 2.3
CS EEEEHHHHHHGGGBSEB--GSS---
*->gvtnvdekvvapnvaLLlnvnnpaa<-*
+++ +++ + pn++LL+n +n a
gi|7796058 1205 IIKIANA--INPNLQLLMNFTNKQA 1227
Pox_G5: domain 1 of 1, from 1216 to 1258: score 2.7, E = 0.19
*->vkSLaDVfKnYslnksNkivdNKkieididiDnIidFIndYasLddt
+++L n++ nk + +v+ +i id +Ii++In Y +Ldd
gi|7796058 1216 LQLLM----NFT-NKQAVTVNDIIISAIIDSEAIINTINQYFKLDDV 1257
V<-*
V
gi|7796058 1258 V 1258
Ehrlichia_rpt: domain 1 of 1, from 1222 to 1234: score 4.6, E = 0.038
*->FTNkEtvnHnvvnDlv<-*
FTNk v vnD++
gi|7796058 1222 FTNKQAV---TVNDII 1234
TFIID_90kDa: domain 1 of 1, from 1241 to 1255: score 3.6, E = 1.8
*->gsiIikIlnqHlhiD<-*
+++Ii+ +nq++ +D
gi|7796058 1241 SEAIINTINQYFKLD 1255
Serinc: domain 1 of 1, from 1305 to 1311: score -1.4, E = 8.7
*->ilPdReF<-*
++P R+F
gi|7796058 1305 VFPERQF 1311
DUF2366: domain 1 of 1, from 1353 to 1362: score 1.7, E = 4.2
*->KMrDYDINee<-*
K+ D DIN++
gi|7796058 1353 KFSDLDINYL 1362
PngaseF_N: domain 1 of 1, from 1385 to 1399: score -0.1, E = 8.9
CS EEEEEEEEEES--SS
*->EYsvDFDivYGtPDY<-*
EYs D Y tP
gi|7796058 1385 EYSLDLSGLYATPQM 1399
Plasmod_MYXSPDY: domain 1 of 1, from 1393 to 1409: score 4.5, E = 3.6
*->mYfsPdytLrlvqLpdt<-*
+Y P +tL l+ +t
gi|7796058 1393 LYATPQMTLDLIAALET 1409
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