hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 77962640.fa
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Query sequence: gi|77962640|ref|ZP_00826458.1|
Accession: [none]
Description: COG0840: Methyl-accepting chemotaxis protein [Yersinia mollaretii ATCC 43969]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF1696 Protein of unknown function (DUF1696) 7.2 0.14 1
Death Death domain 5.9 0.57 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 5.5 0.66 1
SfsA Sugar fermentation stimulation protei 4.2 0.74 1
Bacillus_PapR Bacillus PapR protein 4.3 1.8 1
RII_binding_1 RII binding domain 6.1 2.8 1
ATP-synt_G Mitochondrial ATP synthase g subunit 2.8 3 1
Dymeclin Dyggve-Melchior-Clausen syndrome prot 0.2 3.8 1
Complex1_51K Respiratory-chain NADH dehydrogenase 1.7 3.8 1
YopH_N YopH, N-terminal 1.5 3.9 1
DUF99 Protein of unknown function DUF99 1.0 3.9 1
DUF555 Protein of unknown function (DUF555) 2.0 4.4 1
HRDC HRDC domain 3.2 4.5 1
DUF2195 Uncharacterized protein conserved in 2.0 5 1
Corona_NS4 Coronavirus non-structural protein NS 1.5 5.3 1
HrpB4 Bacterial type III secretion protein -0.4 5.5 1
FokI_N Restriction endonuclease FokI, recogn 1.1 5.8 1
SUFU Suppressor of fused protein (SUFU) -0.8 6 1
TcpF Vibrio cholerae toxin co-regulated pi 0.2 6.1 1
Cytomega_gL Cytomegalovirus glycoprotein L 0.6 6.2 1
Cas_Cas5e CRISPR-associated protein (Cas_Cas5e) 0.6 6.7 1
Glypican Glypican -1.1 6.7 1
DUF2145 Uncharacterized protein conserved in 0.2 7 1
Focal_AT Focal adhesion targeting region 0.7 7.3 1
DUF777 Borrelia burgdorferi protein of unkno 0.7 7.5 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.5 8.1 1
MAPEG MAPEG family 1.2 8.1 1
VWD von Willebrand factor type D domain 0.3 8.7 1
Pertussis_S2S3 Pertussis toxin, subunit 2 and 3, C-t 0.1 8.8 1
HHA Haemolysin expression modulating prot 1.4 8.9 1
DUF679 Protein of unknown function (DUF679) 0.2 9.3 1
Crinivirus_P26 Crinivirus P26 protein -1.1 9.4 1
ChaC ChaC-like protein -0.2 9.8 1
MSV199 MSV199 domain 0.7 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cas_Cas5e 1/1 35 43 .. 1 9 [. 0.6 6.7
Pertussis_S2S3 1/1 146 161 .. 94 109 .] 0.1 8.8
DUF99 1/1 174 185 .. 1 12 [. 1.0 3.9
TcpF 1/1 225 247 .. 332 357 .] 0.2 6.1
YopH_N 1/1 273 286 .. 1 16 [. 1.5 3.9
Mqo 1/1 299 311 .. 480 492 .] -0.5 8.1
U3_assoc_6 1/1 301 315 .. 1 15 [. 5.5 0.66
Death 1/1 306 333 .. 1 33 [. 5.9 0.57
FokI_N 1/1 439 469 .. 1 32 [. 1.1 5.8
DUF679 1/1 458 467 .. 1 10 [. 0.2 9.3
Glypican 1/1 475 494 .. 606 625 .] -1.1 6.7
DUF1696 1/1 503 525 .. 103 125 .] 7.2 0.14
MAPEG 1/1 549 566 .. 138 155 .] 1.2 8.1
DUF777 1/1 619 648 .. 158 187 .] 0.7 7.5
Focal_AT 1/1 620 635 .. 124 139 .] 0.7 7.3
DUF2145 1/1 681 693 .. 1 17 [. 0.2 7
Corona_NS4 1/1 788 797 .. 9 18 .. 1.5 5.3
DUF2195 1/1 798 810 .. 122 134 .] 2.0 5
ChaC 1/1 810 825 .. 195 210 .] -0.2 9.8
Complex1_51K 1/1 909 927 .. 46 64 .. 1.7 3.8
RII_binding_1 1/1 914 926 .. 1 13 [. 6.1 2.8
HRDC 1/1 915 928 .. 57 70 .] 3.2 4.5
HHA 1/1 1066 1071 .. 56 61 .] 1.4 8.9
Dymeclin 1/1 1069 1094 .. 767 791 .] 0.2 3.8
SUFU 1/1 1132 1148 .. 431 447 .. -0.8 6
DUF555 1/1 1155 1165 .. 93 103 .] 2.0 4.4
Crinivirus_P26 1/1 1158 1166 .. 219 227 .] -1.1 9.4
SfsA 1/1 1174 1184 .. 1 11 [. 4.2 0.74
VWD 1/1 1195 1207 .. 155 167 .] 0.3 8.7
MSV199 1/1 1217 1224 .. 155 162 .] 0.7 9.9
Cytomega_gL 1/1 1219 1230 .. 1 12 [. 0.6 6.2
Bacillus_PapR 1/1 1303 1321 .. 31 48 .] 4.3 1.8
ATP-synt_G 1/1 1332 1342 .. 108 118 .] 2.8 3
HrpB4 1/1 1378 1384 .. 259 265 .] -0.4 5.5
Alignments of top-scoring domains:
Cas_Cas5e: domain 1 of 1, from 35 to 43: score 0.6, E = 6.7
*->stLlLRLaG<-*
+tL+++L+G
gi|7796264 35 KTLIFQLQG 43
Pertussis_S2S3: domain 1 of 1, from 146 to 161: score 0.1, E = 8.8
CS EEEEEEEEE--CCCTT
*->tYALtGislCnPaasl<-*
t LtG sl nP l
gi|7796264 146 TLNLTGCSLLNPKQPL 161
DUF99: domain 1 of 1, from 174 to 185: score 1.0, E = 3.9
*->KkEiRvlGiDDa<-*
K ++lG DD+
gi|7796264 174 KQQAEILGLDDS 185
TcpF: domain 1 of 1, from 225 to 247: score 0.2, E = 6.1
*->YqtqvvltkkdgsGVkLYskaySeeF<-*
Y+t++v k++ s LY+ +S+e
gi|7796264 225 YKTKLVWNKETQS---LYKLPLSIEE 247
YopH_N: domain 1 of 1, from 273 to 286: score 1.5, E = 3.9
CS --HHHHHHHHH.HHHH
*->leIndLqslvSqrlae<-*
+ +++vSqr+ e
gi|7796264 273 --LEEMHRQVSQRISE 286
Mqo: domain 1 of 1, from 299 to 311: score -0.5, E = 8.1
*->reiraytskaLqL<-*
+ei++++s+ L+L
gi|7796264 299 NEIEQRVSELLEL 311
U3_assoc_6: domain 1 of 1, from 301 to 315: score 5.5, E = 0.66
*->LEqmvPELedLerkg<-*
+Eq+v EL +L+ g
gi|7796264 301 IEQRVSELLELVNLG 315
Death: domain 1 of 1, from 306 to 333: score 5.9, E = 0.57
CS HHHHHHH..HHCCCTCHHHHHHHCC--HHHHHH
*->eklcallDpdellgkdWkeLArkLglseneIde<-*
++l++l+ +lg++W A++L+l +n++de
gi|7796264 306 SELLELV----NLGNEWNDAASQLHL-DNHLDE 333
FokI_N: domain 1 of 1, from 439 to 469: score 1.1, E = 5.8
CS XXXXXXXX--..--S--SS--.-HHHHHHHHH
*->lilsevsklrNLtFGwvQdpSqdfkeLvkVvs<-*
l l + +l t G+v d+S +Lvk +s
gi|7796264 439 LQLQTYTQLAQNTLGLVHDVS-AVANLVKLAS 469
DUF679: domain 1 of 1, from 458 to 467: score 0.2, E = 9.3
*->LsstAnLakL<-*
s++AnL+kL
gi|7796264 458 VSAVANLVKL 467
Glypican: domain 1 of 1, from 475 to 494: score -1.1, E = 6.7
*->alllltsmlilvVqrlFslw<-*
+l ++ts l++v++++ +l+
gi|7796264 475 PLSAATSLLGTVAPGVVGLL 494
DUF1696: domain 1 of 1, from 503 to 525: score 7.2, E = 0.14
*->iekeFkkdtniyeiqkvLAkyvL<-*
++++++ +t+ +ei++++A+ +L
gi|7796264 503 MSFQLSASTDPVEINTTIANLTL 525
MAPEG: domain 1 of 1, from 549 to 566: score 1.2, E = 8.1
*->lilllLlllallgilnhl<-*
++ll+++++ l+gi+++l
gi|7796264 549 SGLLGMVAVPLAGIAAGL 566
DUF777: domain 1 of 1, from 619 to 648: score 0.7, E = 7.5
*->lkIdgtsle.nHmHssgtltyvnssinslfk<-*
+++d +++++nH+H g +t v s++ s +
gi|7796264 619 AVVDSINFRdNHVHF-GSVTSVGSKGGSWHT 648
Focal_AT: domain 1 of 1, from 620 to 635: score 0.7, E = 7.3
*->aVDqaRvranllvpPk<-*
+VD++ r n+ +++
gi|7796264 620 VVDSINFRDNHVHFGS 635
DUF2145: domain 1 of 1, from 681 to 693: score 0.2, E = 7
*->qaLdaEfqlqGarVvlL<-*
q+Ld ++a+++lL
gi|7796264 681 QELDL----TDAQIFLL 693
Corona_NS4: domain 1 of 1, from 788 to 797: score 1.5, E = 5.3
*->GTdYTlIrPs<-*
G +YTlI+Ps
gi|7796264 788 GGEYTLIMPS 797
DUF2195: domain 1 of 1, from 798 to 810: score 2.0, E = 5
*->gevalrlgCappl<-*
++va+++ Ca ++
gi|7796264 798 KTVAITITCADAD 810
ChaC: domain 1 of 1, from 810 to 825: score -0.2, E = 9.8
*->irDdhLfeLeelVrke<-*
+++++ f++e+l++++
gi|7796264 810 DKEHWIFDIEALIKQS 825
Complex1_51K: domain 1 of 1, from 909 to 927: score 1.7, E = 3.8
*->tkDrrLmredphevieGar<-*
++D++L++++++++++ +r
gi|7796264 909 FSDDTLLEQYAAQILQAVR 927
RII_binding_1: domain 1 of 1, from 914 to 926: score 6.1, E = 2.8
*->eleevAarlVsnV<-*
+le++Aa++ ++V
gi|7796264 914 LLEQYAAQILQAV 926
HRDC: domain 1 of 1, from 915 to 928: score 3.2, E = 4.5
CS HHHHHHHHHHHHHH
*->leryGeeiLeiira<-*
le+y+++iL+++r
gi|7796264 915 LEQYAAQILQAVRP 928
HHA: domain 1 of 1, from 1066 to 1071: score 1.4, E = 8.9
*->PksVWk<-*
P++VW+
gi|7796264 1066 PQGVWR 1071
Dymeclin: domain 1 of 1, from 1069 to 1094: score 0.2, E = 3.8
*->VWrlVvsrs.GvhFnpssIklfpvds<-*
VWr + ++++G++F s l++v+
gi|7796264 1069 VWRFASQQGeGFSFALSERDLLSVSN 1094
SUFU: domain 1 of 1, from 1132 to 1148: score -0.8, E = 6
*->keRLEleWPDKnlKLiv<-*
k+ LEl+W DKn ++i+
gi|7796264 1132 KQQLELNWLDKNTQIII 1148
DUF555: domain 1 of 1, from 1155 to 1165: score 2.0, E = 4.4
*->seIGkALkdVP<-*
s IG AL d+P
gi|7796264 1155 SCIGLALNDIP 1165
Crinivirus_P26: domain 1 of 1, from 1158 to 1166: score -1.1, E = 9.4
*->GLsLnDiKi<-*
GL+LnDi +
gi|7796264 1158 GLALNDIPV 1166
SfsA: domain 1 of 1, from 1174 to 1184: score 4.2, E = 0.74
*->lrRynRFlvdV<-*
l+R+nRF+v +
gi|7796264 1174 LSRKNRFTVNI 1184
VWD: domain 1 of 1, from 1195 to 1207: score 0.3, E = 8.7
*->gepedDfrtpdGs<-*
+ ++Df+++++
gi|7796264 1195 NITDNDFVMRSNL 1207
MSV199: domain 1 of 1, from 1217 to 1224: score 0.7, E = 9.9
*->iklEelLr<-*
+++Ee+L+
gi|7796264 1217 LNMEEILF 1224
Cytomega_gL: domain 1 of 1, from 1219 to 1230: score 0.6, E = 6.2
*->mklliFfssril<-*
m++ +Ffs++++
gi|7796264 1219 MEEILFFSFLNS 1230
Bacillus_PapR: domain 1 of 1, from 1303 to 1321: score 4.3, E = 1.8
*->ishqqqEv.QLAsdlPFEf<-*
i+h q v+QLAs +PF f
gi|7796264 1303 ITHAQIQVqQLASIVPFFF 1321
ATP-synt_G: domain 1 of 1, from 1332 to 1342: score 2.8, E = 3
*->GRGRklvGYkv<-*
GR +++vGYk+
gi|7796264 1332 GRAFTVVGYKG 1342
HrpB4: domain 1 of 1, from 1378 to 1384: score -0.4, E = 5.5
*->LPsLfPE<-*
L+++fPE
gi|7796264 1378 LDTFFPE 1384
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