hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 77976979.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|77976979|ref|ZP_00832442.1|
Accession: [none]
Description: COG2931: RTX toxins and related Ca2+-binding proteins [Yersinia intermedia ATCC 29909]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 57.7 2.6e-16 8
PMBR Pseudomurein-binding repeat 9.3 0.18 2
Cation_efflux Cation efflux family 6.2 0.26 2
NMN_transporter Nicotinamide mononucleotide transport 3.6 0.31 1
Hydantoinase_B Hydantoinase B/oxoprolinase 2.3 0.82 1
YgbB YgbB family 4.2 1.1 1
ATG_C ATG C terminal domain 4.1 1.1 1
Transferrin Transferrin 2.4 1.3 1
DUF2460 Conserved hypothetical protein 2217 ( 3.7 1.4 1
IncA IncA protein 4.3 1.4 1
Anp1 Anp1 1.3 1.4 1
SpoIIE Stage II sporulation protein E (SpoII 2.6 1.7 1
LTXXQ LTXXQ motif 5.1 1.9 1
AvrPtoB-E3_ubiq AvrPtoB E3 ubiquitin ligase 1.9 2.2 1
PD40 WD40-like Beta Propeller Repeat 3.6 2.2 1
ASFV_p27 IAP-like protein p27 C-terminus 1.9 2.2 1
DUF1854 Domain of unknown function (DUF1854) 3.1 2.2 1
Omptin Omptin family 1.6 2.2 1
Glyco_hydro_85 Glycosyl hydrolase family 85 1.9 2.4 1
DUF816 Baculovirus protein of unknown functi 2.6 2.6 1
DUF2420 Protein of unknown function (DUF2420) 2.9 2.6 1
DASH_Dad2 DASH complex subunit Dad2 3.1 2.6 1
FHIPEP FHIPEP family 0.6 2.7 1
DUF839 Bacterial protein of unknown function 0.2 3 1
TrbI_Ftype Type-F conjugative transfer system pr 3.4 3.2 1
Rad21_Rec8 Conserved region of Rad21 / Rec8 like 3.9 3.3 1
MMS1 Mono-functional DNA-alkylating agent -1.1 3.5 1
YbjN Putative bacterial sensory transducti 1.3 3.6 1
DUF1116 Protein of unknown function (DUF1116) 2.2 3.6 1
DUF1533 Protein of unknown function (DUF1533) 3.6 3.7 1
MATH MATH domain 2.7 3.8 1
DUF1596 Protein of unknown function (DUF1596) 1.9 3.9 1
rve Integrase core domain 2.3 4.1 1
Abhydrolase_1 alpha/beta hydrolase fold 1.6 4.1 1
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd 2.7 4.2 1
Parvo_coat_N Parvovirus coat protein VP1 2.1 4.2 1
BAG BAG domain 2.7 4.5 1
CagZ CagZ -0.3 4.7 1
DUF1410 DUF1410 domain 2.7 4.8 1
Flag1_repress Repressor of phase-1 flagellin 0.1 4.9 1
MatK_N MatK/TrnK amino terminal region 1.6 5 1
DUF2046 Uncharacterized conserved protein H4 -0.3 5.4 1
Ilm1 Increased loss of mitochondrial DNA p 1.2 5.5 1
PerB PerB protein 1.8 5.6 1
Spore_SspJ Small spore protein J (Spore_SspJ) 2.3 5.6 1
DUF1325 Protein of unknown function (DUF1325) 1.3 5.7 1
XET_C Xyloglucan endo-transglycosylase (XET 1.0 5.9 1
DcuA_DcuB Anaerobic c4-dicarboxylate membrane t -0.0 6 1
RNA_pol_Rpb2_1 RNA polymerase beta subunit 0.6 6.2 1
DUF1344 Protein of unknown function (DUF1344) 2.3 6.3 1
STT3 Oligosaccharyl transferase STT3 subun -0.7 6.4 1
PurA PurA ssDNA and RNA-binding protein 0.4 6.6 1
Serpin Serpin (serine protease inhibitor) -0.6 6.6 1
Fer4_NifH 4Fe-4S iron sulfur cluster binding pr 0.1 6.7 1
Curlin_rpt Curlin associated repeat 2.4 6.9 1
Sigma54_CBD Sigma-54 factor, core binding domain 1.0 6.9 1
DNA_ligase_A_N DNA ligase N terminus 1.6 6.9 1
KGK KGK domain 0.9 7 1
Peptidase_M16 Insulinase (Peptidase family M16) 1.6 7.1 1
Nic96 Nup93/Nic96 -0.1 7.6 1
Baculo_PEP_C Baculovirus polyhedron envelope prote 1.7 7.7 1
Baculo_E66 Baculovirus E66 occlusion-derived vir -1.3 7.8 1
Glyco_hydro_65C Glycosyl hydrolase family 65, C-termi 2.7 8 1
Herpes_UL14 Herpesvirus UL14-like protein 0.3 8.2 1
Pneumo_NS1 Pneumovirus NS1 protein 0.7 8.2 1
ISN1 IMP-specific 5'-nucleotidase -1.6 8.4 1
ABC_membrane ABC transporter transmembrane region 0.9 8.6 1
MetJ Met Apo-repressor, MetJ 0.9 8.9 1
Aminotran_5 Aminotransferase class-V 0.2 9.1 1
Fez1 Fez1 -0.1 9.2 1
Mis14 Kinetochore protein Mis14 like 1.2 9.2 1
HEAT HEAT repeat 2.9 9.3 1
DUF1473 Protein of unknown function (DUF1473) -0.3 9.8 1
Fibrillarin_2 Fibrillarin-like archaeal protein -1.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flag1_repress 1/1 2 20 .. 85 103 .. 0.1 4.9
Sigma54_CBD 1/1 11 19 .. 196 204 .] 1.0 6.9
Cation_efflux 1/2 89 111 .. 279 302 .] 3.3 1.5
BAG 1/1 152 168 .. 74 90 .] 2.7 4.5
PerB 1/1 163 177 .. 1 16 [. 1.8 5.6
ASFV_p27 1/1 213 227 .. 1 16 [. 1.9 2.2
ATG_C 1/1 220 236 .. 82 98 .] 4.1 1.1
STT3 1/1 238 250 .. 862 874 .] -0.7 6.4
Omptin 1/1 255 271 .. 1 17 [. 1.6 2.2
Parvo_coat_N 1/1 306 327 .. 44 64 .] 2.1 4.2
RNA_pol_Rpb2_1 1/1 309 369 .. 10 52 .. 0.6 6.2
Fer4_NifH 1/1 349 366 .. 249 268 .. 0.1 6.7
Cation_efflux 2/2 376 406 .. 271 302 .] 2.9 2.1
PurA 1/1 383 389 .. 1 7 [. 0.4 6.6
Herpes_UL14 1/1 422 428 .. 154 160 .] 0.3 8.2
DUF1116 1/1 425 441 .. 203 219 .] 2.2 3.6
Ribosomal_L7Ae 1/1 442 459 .. 1 18 [. 2.7 4.2
MetJ 1/1 450 479 .. 75 104 .] 0.9 8.9
Glyco_hydro_65C 1/1 486 511 .. 30 56 .] 2.7 8
Fez1 1/1 488 502 .. 24 38 .. -0.1 9.2
DUF1344 1/1 540 554 .. 68 82 .] 2.3 6.3
ISN1 1/1 546 560 .. 181 195 .. -1.6 8.4
Aminotran_5 1/1 559 586 .. 1 28 [. 0.2 9.1
PMBR 1/2 564 584 .. 1 21 [. 7.0 0.82
Nic96 1/1 603 671 .. 1 78 [. -0.1 7.6
Anp1 1/1 606 637 .. 223 253 .. 1.3 1.4
DUF2420 1/1 626 638 .. 102 114 .] 2.9 2.6
Mis14 1/1 643 671 .. 1 34 [. 1.2 9.2
DNA_ligase_A_N 1/1 650 657 .. 183 190 .] 1.6 6.9
MatK_N 1/1 659 674 .. 316 331 .] 1.6 5
DUF1854 1/1 663 677 .. 119 133 .] 3.1 2.2
Fibrillarin_2 1/1 687 703 .. 1 19 [. -1.6 10
Baculo_PEP_C 1/1 706 718 .. 1 15 [. 1.7 7.7
Serpin 1/1 707 737 .. 306 337 .. -0.6 6.6
DUF2460 1/1 727 750 .. 202 225 .] 3.7 1.4
NMN_transporter 1/1 784 800 .. 57 73 .. 3.6 0.31
PD40 1/1 788 805 .. 20 41 .] 3.6 2.2
DASH_Dad2 1/1 824 841 .. 28 45 .. 3.1 2.6
DUF1533 1/1 858 872 .. 56 70 .] 3.6 3.7
DUF1325 1/1 1014 1050 .. 1 42 [. 1.3 5.7
HEAT 1/1 1050 1071 .. 15 36 .] 2.9 9.3
CagZ 1/1 1130 1147 .. 182 199 .] -0.3 4.7
DUF816 1/1 1210 1230 .. 98 118 .. 2.6 2.6
IncA 1/1 1210 1274 .. 1 80 [. 4.3 1.4
ABC_membrane 1/1 1213 1280 .. 212 286 .] 0.9 8.6
MATH 1/1 1226 1246 .. 130 152 .] 2.7 3.8
DcuA_DcuB 1/1 1250 1258 .. 366 374 .] -0.0 6
Ilm1 1/1 1275 1290 .. 173 190 .] 1.2 5.5
LTXXQ 1/1 1308 1330 .. 1 23 [] 5.1 1.9
Rad21_Rec8 1/1 1308 1326 .. 1 19 [. 3.9 3.3
XET_C 1/1 1318 1330 .. 23 35 .. 1.0 5.9
Hydantoinase_B 1/1 1326 1347 .. 1 23 [. 2.3 0.82
DUF1473 1/1 1419 1429 .. 1 11 [. -0.3 9.8
AvrPtoB-E3_ubiq 1/1 1432 1449 .. 108 125 .] 1.9 2.2
YbjN 1/1 1432 1443 .. 20 31 .. 1.3 3.6
Baculo_E66 1/1 1435 1447 .. 658 671 .] -1.3 7.8
Transferrin 1/1 1470 1486 .. 322 338 .] 2.4 1.3
FHIPEP 1/1 1487 1496 .. 653 662 .] 0.6 2.7
Peptidase_M16 1/1 1512 1536 .. 136 160 .] 1.6 7.1
Glyco_hydro_85 1/1 1531 1543 .. 363 375 .] 1.9 2.4
HemolysinCabind 1/8 1553 1570 .. 1 18 [] 3.4 7.2
HemolysinCabind 2/8 1586 1596 .. 8 18 .] 2.3 16
Pneumo_NS1 1/1 1592 1610 .. 1 20 [. 0.7 8.2
YgbB 1/1 1601 1609 .. 1 9 [. 4.2 1.1
Spore_SspJ 1/1 1639 1650 .. 1 14 [. 2.3 5.6
HemolysinCabind 3/8 1662 1671 .. 9 18 .] 5.1 2.3
MMS1 1/1 1764 1787 .. 1433 1460 .] -1.1 3.5
DUF2046 1/1 1786 1805 .. 418 439 .] -0.3 5.4
DUF1596 1/1 1804 1824 .. 1 21 [. 1.9 3.9
HemolysinCabind 4/8 1872 1883 .. 7 18 .] 0.2 66
SpoIIE 1/1 1912 1925 .. 1 14 [. 2.6 1.7
rve 1/1 1942 1972 .. 1 32 [. 2.3 4.1
KGK 1/1 1947 1978 .. 1 44 [. 0.9 7
PMBR 2/2 1951 1975 .. 1 25 [. 2.3 16
DUF1410 1/1 1955 1981 .. 1 28 [. 2.7 4.8
Curlin_rpt 1/1 1974 1984 .. 25 35 .] 2.4 6.9
DUF839 1/1 1988 2013 .. 1 26 [. 0.2 3
HemolysinCabind 5/8 2030 2047 .. 1 18 [] 3.5 6.9
HemolysinCabind 6/8 2048 2065 .. 1 18 [] 14.7 0.0028
HemolysinCabind 7/8 2066 2083 .. 1 18 [] 19.8 7.9e-05
HemolysinCabind 8/8 2086 2101 .. 3 18 .] 8.7 0.18
Abhydrolase_1 1/1 2189 2219 .] 206 236 .] 1.6 4.1
TrbI_Ftype 1/1 2191 2206 .. 96 111 .] 3.4 3.2
Alignments of top-scoring domains:
Flag1_repress: domain 1 of 1, from 2 to 20: score 0.1, E = 4.9
*->EliahdalgrtlvaaDvfn<-*
El +d l r l+ +D+f+
gi|7797697 2 ELNTGDKLSRILIQPDYFD 20
Sigma54_CBD: domain 1 of 1, from 11 to 19: score 1.0, E = 6.9
*->RvlVNqrYf<-*
R+l++++Yf
gi|7797697 11 RILIQPDYF 19
Cation_efflux: domain 1 of 2, from 89 to 111: score 3.3, E = 1.5
*->krlleefpeiehvtihvepagcee<-*
+rl++++p + v+i+++ e+
gi|7797697 89 ERLASKHP-DKTVIIQYDINAGEH 111
BAG: domain 1 of 1, from 152 to 168: score 2.7, E = 4.5
CS HHHHHHHHHHHHHHHHH
*->rlvrkiqalLeklDskk<-*
+++ +q+++ekl ++k
gi|7797697 152 EVISGLQRIQEKLNLTK 168
PerB: domain 1 of 1, from 163 to 177: score 1.8, E = 5.6
*->mKnnLREEKEvviDGC<-*
K nL K vvi GC
gi|7797697 163 -KLNLTKPKHVVIAGC 177
ASFV_p27: domain 1 of 1, from 213 to 227: score 1.9, E = 2.2
*->AtLGiiGLKKmiDsYn<-*
t+ iiG K iDs n
gi|7797697 213 -TVNIIGQKNTIDSAN 227
ATG_C: domain 1 of 1, from 220 to 236: score 4.1, E = 1.1
*->rNqLDPdareeirdKYK<-*
+N +D +++++++KY+
gi|7797697 220 KNTIDSANQQHSKNKYH 236
STT3: domain 1 of 1, from 238 to 250: score -0.7, E = 6.4
*->vkifysgklevkv<-*
+k++++++++++v
gi|7797697 238 IKYSKDEHGNIIV 250
Omptin: domain 1 of 1, from 255 to 271: score 1.6, E = 2.2
*->asaqlipdfspdnistd<-*
a+++li d++++ +s+d
gi|7797697 255 ATSLLINDIINERVSVD 271
Parvo_coat_N: domain 1 of 1, from 306 to 327: score 2.1, E = 4.2
*->YlkfnhA.DeeFikeLkddtsF<-*
Ylkfn+ D+++ k++ +d sF
gi|7797697 306 YLKFNEFlDKKLDKDISGDQSF 327
RNA_pol_Rpb2_1: domain 1 of 1, from 309 to 369: score 0.6, E = 6.2
CS HHHHHHTHHH. ..HHHSSS
RF xxxxxxxxxxx xxxxxxxx
*->FneFldegLqn............................seeiidef
FneFld++L+ + +++++ + + +++++++ ++ + +e+i+++
gi|7797697 309 FNEFLDKKLDKdisgdqsfadwsirrsnnksvlsswgyvNAEEIYDN 355
CS TB--XXXXXXXXXXXXXXXXXX--
RF xxxxxxxxxxxxxxxxxxxxxxxx
spIededeaQhttesgnleiefsl<-*
+ I++ + + ++++
gi|7797697 356 KLIKPTPL----------DYDYQV 369
Fer4_NifH: domain 1 of 1, from 349 to 366: score 0.1, E = 6.7
CS HHHHHC--.--B------HH
*->ArkiienpeklviPkPltmd<-*
A++i++n+ l++P+Pl d
gi|7797697 349 AEEIYDNK--LIKPTPLDYD 366
Cation_efflux: domain 2 of 2, from 376 to 406: score 2.9, E = 2.1
*->heiadeiekrlleefpeiehvtihvepagcee<-*
+e++++ ++l++++p + +i+++ + e+
gi|7797697 376 DEVIVRSTQELASKHP-DKTLIIQYDITSGES 406
PurA: domain 1 of 1, from 383 to 389: score 0.4, E = 6.6
*->eQELAsK<-*
+QELAsK
gi|7797697 383 TQELASK 389
Herpes_UL14: domain 1 of 1, from 422 to 428: score 0.3, E = 8.2
*->kWmLeea<-*
kW+L+++
gi|7797697 422 KWILTGH 428
DUF1116: domain 1 of 1, from 425 to 441: score 2.2, E = 3.6
*->FpGyseeDAnpdiGDSA<-*
++G++++D n++ G SA
gi|7797697 425 LTGHGDDDENTLDGHSA 441
Ribosomal_L7Ae: domain 1 of 1, from 442 to 459: score 2.7, E = 4.2
CS HHHHHHHHHHHHHSEEEE
*->daveellkkAlkagklvl<-*
d+v+++l+ + k++kl++
gi|7797697 442 DKVYSALQDLAKQKKLTI 459
MetJ: domain 1 of 1, from 450 to 479: score 0.9, E = 8.9
*->DLrKERsDEiPEaAKelmRElGvdPEsWEY<-*
DL K + iPE l ElG +P++
gi|7797697 450 DLAKQKKLTIPERMVILSCELGKNPDTDGI 479
Glyco_hydro_65C: domain 1 of 1, from 486 to 511: score 2.7, E = 8
*->krvtitllgGdapLtirvaGkevtLdg<-*
k+++i + G+ +L++r + +ev +d+
gi|7797697 486 KYAEIAQKNGE-NLSLRAYTQEVIVDD 511
Fez1: domain 1 of 1, from 488 to 502: score -0.1, E = 9.2
*->AELaQKasEIvsLRa<-*
AE aQK +E +sLRa
gi|7797697 488 AEIAQKNGENLSLRA 502
DUF1344: domain 1 of 1, from 540 to 554: score 2.3, E = 6.3
*->YdevdnGkrvitDiq<-*
Y+++ nG + i+D+
gi|7797697 540 YQTTKNGQLLINDMP 554
ISN1: domain 1 of 1, from 546 to 560: score -1.6, E = 8.4
*->GqdLlndnpviSyil<-*
Gq L+nd pv+Syil
gi|7797697 546 GQLLINDMPVASYIL 560
Aminotran_5: domain 1 of 1, from 559 to 586: score 0.2, E = 9.1
CS EE--TTT----HHHHHHHHHCCCCCCCS
*->iYLDsAATtqkPqaVldAlqeyYtdyng<-*
i LD AA +P + ++++++y++ y++
gi|7797697 559 ILLDIAADKITPNEAIEKYSQYLEYYFA 586
PMBR: domain 1 of 2, from 564 to 584: score 7.0, E = 0.82
*->asgkisreeyldmasrvlnFi<-*
a+ ki+++e+++ +s++l ++
gi|7797697 564 AADKITPNEAIEKYSQYLEYY 584
Nic96: domain 1 of 1, from 603 to 671: score -0.1, E = 7.6
*->apnLvelfaslseesfe.p.n.rfnndrqlsdewqilqamtdegpvs
p+++++fa+++e+++ +p +++nn ++ + + + + + ++ ++
gi|7797697 603 DPLVWQRFAEYAEKTQQdPaAhQYNNWVEST-AGHKSRTLSQRARSA 648
ndkqkqlLe.awrssdaiklrkqspkymlvegskr<-*
L+ +++s+ +i+ q l++ sk+
gi|7797697 649 ----VTVLDaLAESRVSIT---Q-----LHKDSKK 671
Anp1: domain 1 of 1, from 606 to 637: score 1.3, E = 1.4
*->VwQRplpdwlKk.gderPYDlNSWvESetglq<-*
VwQR+ + +K + d +N+WvES +g +
gi|7797697 606 VWQRFAEYAEKTqQDPAAHQYNNWVESTAGHK 637
DUF2420: domain 1 of 1, from 626 to 638: score 2.9, E = 2.6
*->YNeLvelvessas<-*
YN+ ve++++++s
gi|7797697 626 YNNWVESTAGHKS 638
Mis14: domain 1 of 1, from 643 to 671: score 1.2, E = 9.2
*->emaseslsvngadfesktVQenasligesweete<-*
+ a+ +++v +a +es +V s++++ +++++
gi|7797697 643 QRARSAVTVLDALAES-RV----SITQLHKDSKK 671
DNA_ligase_A_N: domain 1 of 1, from 650 to 657: score 1.6, E = 6.9
*->tvLdALak<-*
tvLdALa
gi|7797697 650 TVLDALAE 657
MatK_N: domain 1 of 1, from 659 to 674: score 1.6, E = 5
*->rihInqLsnhsldFLG<-*
r++I qL ++s LG
gi|7797697 659 RVSITQLHKDSKKLLG 674
DUF1854: domain 1 of 1, from 663 to 677: score 3.1, E = 2.2
*->taLDkhSrKLLdRFL<-*
t+L k S+KLL F+
gi|7797697 663 TQLHKDSKKLLGDFI 677
Fibrillarin_2: domain 1 of 1, from 687 to 703: score -1.6, E = 10
*->MhdLIkeAindlDaAlELr<-*
++++k+ ind+D+ l Lr
gi|7797697 687 -REILKK-INDPDSYLDLR 703
Baculo_PEP_C: domain 1 of 1, from 706 to 718: score 1.7, E = 7.7
*->lngvNQlilNGGnsN<-*
l++++Ql+ N nsN
gi|7797697 706 LLELQQLSDN--NSN 718
Serpin: domain 1 of 1, from 707 to 737: score -0.6, E = 6.6
CS TT-GGGGSTTTSSCTTTBSSSTEEEEEEEEEE
*->LGItdlFseskADLsgisededLkVSkavHKA<-*
L+++ l +++ ++L+++++ e L +S a HK+
gi|7797697 707 LELQQLSDNN-SNLTQLTDVEALNLSVAWHKS 737
DUF2460: domain 1 of 1, from 727 to 750: score 3.7, E = 1.4
*->rldysiaafgageapnIplvEVkv<-*
+l+ s+a++++++ +n+ l+E+++
gi|7797697 727 ALNLSVAWHKSQADNNLRLMEIAG 750
NMN_transporter: domain 1 of 1, from 784 to 800: score 3.6, E = 0.31
*->sGvlcvvfaskgkpiny<-*
+Gv++++f+skg+++++
gi|7797697 784 LGVTYLYFSSKGNTSGF 800
PD40: domain 1 of 1, from 788 to 805: score 3.6, E = 2.2
*->tivFssnrgdgddgsGsfdiyv<-*
+++Fss+++ sG d+
gi|7797697 788 YLYFSSKGN----TSGFHDLLS 805
DASH_Dad2: domain 1 of 1, from 824 to 841: score 3.1, E = 2.6
*->vaQLeeLaekvetMadGt<-*
v+QL+++++k++t+ ++t
gi|7797697 824 VKQLDKINQKINTLESNT 841
DUF1533: domain 1 of 1, from 858 to 872: score 3.6, E = 3.7
*->IkIkakGYeDaeiti<-*
I+I a+GY +++++
gi|7797697 858 IEINANGYYQVVFEN 872
DUF1325: domain 1 of 1, from 1014 to 1050: score 1.3, E = 5.7
*->atksklktLYktaSrHdakedaeqevnilraalnklselrss<-*
+++++ tL ++ ++++q+v+++ ++l++++ l++s
gi|7797697 1014 VKLNEFYTLPDQT-----SVEQQQSVKVIKILLDNNKNLLNS 1050
HEAT: domain 1 of 1, from 1050 to 1071: score 2.9, E = 9.3
CS CSSHHHHHHHHHHHHHHHHHSC
*->nDpdpeVReaAaeaLgalaevl<-*
++pdp+V ++Aa+ ++a+ + +
gi|7797697 1050 SHPDPNVMQNAARYIAAINKSV 1071
CagZ: domain 1 of 1, from 1130 to 1147: score -0.3, E = 4.7
*->LtsLERAKLitqLKLnLE<-*
+t ERA +i qL + L
gi|7797697 1130 ITEAERAEIIKQLAIGLS 1147
DUF816: domain 1 of 1, from 1210 to 1230: score 2.6, E = 2.6
*->ksvlevalkRLdkInpDlksS<-*
++ ++++ k L+++npDlk +
gi|7797697 1210 REAIDNFTKALQETNPDLKRD 1230
IncA: domain 1 of 1, from 1210 to 1274: score 4.3, E = 1.4
*->ptlplsptsppetsssrtseprpskkssrlrkkilaialivlGilll
++ ++t+ ++++++ +++ i++ +l v+G+++
gi|7797697 1210 REAIDNFTKALQETNPDLKRDY-----------IVNGSLSVVGAAIS 1245
aaGvvlLvlflipglgggisigigiglllalGv<-*
+a +v+L + gl+++ +igi++g+ l+lG+
gi|7797697 1246 IATAVAL----AMGLSAAGPIGIAVGATLMLGG 1274
ABC_membrane: domain 1 of 1, from 1213 to 1280: score 0.9, E = 8.6
*->lerydkaledaekagikkaiiaglsfgitqlisylsyalalwfGgyL
+++++kal++ + + i++g ++ + +is + a+al++G
gi|7797697 1213 IDNFTKALQETNPDLKRDYIVNGSLSVVGAAISIA-TAVALAMGLSA 1258
vasvisgglsvgtvfaflslglqlsgpl<-*
g+ ++ v a+l+lg+++ +++
gi|7797697 1259 ------AGPIGIAVGATLMLGGMIYNAV 1280
MATH: domain 1 of 1, from 1226 to 1246: score 2.7, E = 3.8
CS HHHTS..TTTBTTEE EEEEEE--
*->dleedYrgyvvdDsi.iiEAeVkI<-*
dl++dY +v++s++++ A + I
gi|7797697 1226 DLKRDY---IVNGSLsVVGAAISI 1246
DcuA_DcuB: domain 1 of 1, from 1250 to 1258: score -0.0, E = 6
*->vaiALGvpp<-*
va+A+G+++
gi|7797697 1250 VALAMGLSA 1258
Ilm1: domain 1 of 1, from 1275 to 1290: score 1.2, E = 5.5
*->wiyvaLREERneylKkfa<-*
+iy+a+R ++ey+K+++
gi|7797697 1275 MIYNAVR--QVEYIKREI 1290
LTXXQ: domain 1 of 1, from 1308 to 1330: score 5.1, E = 1.9
*->akariaerliLTpEQrqqlkrlk<-*
a+ + ++ ++L++EQ+ +++ ++
gi|7797697 1308 AEPEKEILNKLSAEQKRKMDNFR 1330
Rad21_Rec8: domain 1 of 1, from 1308 to 1326: score 3.9, E = 3.3
CS HHHHHTT----------HH
*->tegeklslsqLpagttRke<-*
+e+ek+ l++L+a +Rk+
gi|7797697 1308 AEPEKEILNKLSAEQKRKM 1326
XET_C: domain 1 of 1, from 1318 to 1330: score 1.0, E = 5.9
*->LdatqrrrmrWVq<-*
L+a+q+r+m +++
gi|7797697 1318 LSAEQKRKMDNFR 1330
Hydantoinase_B: domain 1 of 1, from 1326 to 1347: score 2.3, E = 0.82
*->rDpIlLEKiFknlfssIAeeMGt<-*
+D +LE kn + I e MG+
gi|7797697 1326 MDNFRLE-LVKNTYTKIIEPMGF 1347
DUF1473: domain 1 of 1, from 1419 to 1429: score -0.3, E = 9.8
*->MRYKlKILTka<-*
MRYK K L +
gi|7797697 1419 MRYKTKPLSEN 1429
AvrPtoB-E3_ubiq: domain 1 of 1, from 1432 to 1449: score 1.9, E = 2.2
CS --B-STTTHHHHEEEEE-
*->RerLdakniakYAFrivP<-*
R+ Ld+kn+ + F iv
gi|7797697 1432 RKWLDDKNVDHFKFDIVE 1449
YbjN: domain 1 of 1, from 1432 to 1443: score 1.3, E = 3.6
*->rrWLdqanieyf<-*
r+WLd+ n+++f
gi|7797697 1432 RKWLDDKNVDHF 1443
Baculo_E66: domain 1 of 1, from 1435 to 1447: score -1.3, E = 7.8
*->lnntshgnQFkFdy<-*
l++ + +FkFd+
gi|7797697 1435 LDDK-NVDHFKFDI 1447
Transferrin: domain 1 of 1, from 1470 to 1486: score 2.4, E = 1.3
CS HHHHCHHHHHHHHHHHS
*->eLYLGaeYltAIqnLrk<-*
eL+ +eY++ I+nL
gi|7797697 1470 ELFMSHEYFNGIRNLWR 1486
FHIPEP: domain 1 of 1, from 1487 to 1496: score 0.6, E = 2.7
*->ynEippdvei<-*
ynE++p +ei
gi|7797697 1487 YNEVTPTIEI 1496
Peptidase_M16: domain 1 of 1, from 1512 to 1536: score 1.6, E = 7.1
CS HHHHHHHHHHHTTTSGGGSHSS-TH
*->evlldnlhaaayrgtpLgrsllgPg<-*
e++++ +ha+ + ++p +++ ++Pg
gi|7797697 1512 ENVTESIHAPSFGNNPDKSTHFNPG 1536
Glyco_hydro_85: domain 1 of 1, from 1531 to 1543: score 1.9, E = 2.4
*->TnFNtGsGnkffv<-*
T+FN+G G+ + +
gi|7797697 1531 THFNPGRGSDLII 1543
HemolysinCabind: domain 1 of 8, from 1553 to 1570: score 3.4, E = 7.2
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+G t +Gg+ Dt+
gi|7797697 1553 DIGEGEKTFFGGDKEDTF 1570
HemolysinCabind: domain 2 of 8, from 1586 to 1596: score 2.3, E = 16
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+G +G Dtl
gi|7797697 1586 VLDGQGGSDTL 1596
Pneumo_NS1: domain 1 of 1, from 1592 to 1610: score 0.7, E = 8.2
*->mGsesLsvikvRLrnlyDnD<-*
Gs++L ++ R n yD D
gi|7797697 1592 -GSDTLVLLGLRFGNGYDVD 1610
YgbB: domain 1 of 1, from 1601 to 1609: score 4.2, E = 1.1
*->iRiGqGyDV<-*
+R G+GyDV
gi|7797697 1601 LRFGNGYDV 1609
Spore_SspJ: domain 1 of 1, from 1639 to 1650: score 2.3, E = 5.6
*->mGiFFnKDkGkksE<-*
G FFnK kG+ s+
gi|7797697 1639 -G-FFNKIKGNASD 1650
HemolysinCabind: domain 3 of 8, from 1662 to 1671: score 5.1, E = 2.3
CS EEEESSCGEE
*->LyGgaGnDtl<-*
L+G +GnD+l
gi|7797697 1662 LDGREGNDIL 1671
MMS1: domain 1 of 1, from 1764 to 1787: score -1.1, E = 3.5
*->qplslkdksklpcvdeiePaweselevn<-*
+++ ++ ++l++v +w++el+ n
gi|7797697 1764 HNFIINTADSLILVP----NWPKELDKN 1787
DUF2046: domain 1 of 1, from 1786 to 1805: score -0.3, E = 5.4
*->rkLseseSslEadeEriynEav<-*
+ +e SslE++ ++yn ++
gi|7797697 1786 KNVNELPSSLEMM--AYYNPMI 1805
DUF1596: domain 1 of 1, from 1804 to 1824: score 1.9, E = 3.9
*->mfeqserrssgskptqPsRpY<-*
m++q+e+ s+ + t R+Y
gi|7797697 1804 MIKQAEKPSGKQEVTIYKRSY 1824
HemolysinCabind: domain 4 of 8, from 1872 to 1883: score 0.2, E = 66
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
Dt + ++G++ +
gi|7797697 1872 DTVTANGGDNEF 1883
SpoIIE: domain 1 of 1, from 1912 to 1925: score 2.6, E = 1.7
*->pdgrvalviGDVmG<-*
pd++v l GDV+G
gi|7797697 1912 PDNTVYLSFGDVTG 1925
rve: domain 1 of 1, from 1942 to 1972: score 2.3, E = 4.1
*->r.srpnelwqmDitGplpvptkggkkyllvivD<-*
++++pne +++Di+ +l+ +++ + ++++ D
gi|7797697 1942 HrDKPNEFLSIDII-YLDKLKYK-NNKVITFSD 1972
KGK: domain 1 of 1, from 1947 to 1978: score 0.9, E = 7
*->ndnleqlNKIvLlemdrkkillsdDDVlsllvddFnkliiAstf<-*
n++l ++ I L+ + + + V+ +++++ +stf
gi|7797697 1947 NEFLSIDI-IYLDKLK-----YKNNKVITFSDKN------GSTF 1978
PMBR: domain 2 of 2, from 1951 to 1975: score 2.3, E = 16
*->asgkisreeyldmasrvlnFiesng<-*
+ i+++ +++ ++v+ F ++ng
gi|7797697 1951 SIDIIYLDKLKYKNNKVITFSDKNG 1975
DUF1410: domain 1 of 1, from 1955 to 1981: score 2.7, E = 4.8
*->ladlnknlaNkkvkltFkDennqeykid<-*
+ + + +++N+kv tF D+n+ ++ ++
gi|7797697 1955 IYLDKLKYKNNKV-ITFSDKNGSTFFVE 1981
Curlin_rpt: domain 1 of 1, from 1974 to 1984: score 2.4, E = 6.9
*->snNdatvtQdG<-*
+ ++++v+Q+G
gi|7797697 1974 NGSTFFVEQSG 1984
DUF839: domain 1 of 1, from 1988 to 2013: score 0.2, E = 3
*->lgfgPlapdpdsynvldtlaVPeGYr<-*
++++a+d++ + d + +PeGYr
gi|7797697 1988 SVYEESAVDIKATEGNDNINLPEGYR 2013
HemolysinCabind: domain 5 of 8, from 2030 to 2047: score 3.5, E = 6.9
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G + +t++Gg GnD+l
gi|7797697 2030 DGSGRGNTINGGIGNDIL 2047
HemolysinCabind: domain 6 of 8, from 2048 to 2065: score 14.7, E = 0.0028
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ Gn++L+Gg+G D+l
gi|7797697 2048 HAKSGNNRLNGGQGHDQL 2065
HemolysinCabind: domain 7 of 8, from 2066 to 2083: score 19.8, E = 7.9e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+GnD+L+ +GnDtl
gi|7797697 2066 FSGNGNDHLHAAQGNDTL 2083
HemolysinCabind: domain 8 of 8, from 2086 to 2101: score 8.7, E = 0.18
CS -SSS-EEEEESSCGEE
*->GaGnDtLyGgaGnDtl<-*
G+G D ++Gg+GnDt+
gi|7797697 2086 GGGIDFMDGGKGNDTF 2101
Abhydrolase_1: domain 1 of 1, from 2189 to 2219: score 1.6, E = 4.1
CS HTTTEEEEEETTHCSHHSHHHHHHHHHHHH H
*->lipnaelvviddagHlagllekpeevaeli.k<-*
++p +++++i++ gH + + ++ ++li +
gi|7797697 2189 NVPDKTRELIQGVGHKM-YGADLNRAWALIaA 2219
TrbI_Ftype: domain 1 of 1, from 2191 to 2206: score 3.4, E = 3.2
*->PDITrEIQtDVArRMk<-*
PD TrE ++V + M
gi|7797697 2191 PDKTRELIQGVGHKMY 2206
//