hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 78185762.fa
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Query sequence: gi|78185762|ref|YP_378196.1|
Accession: [none]
Description: hypothetical protein Syncc9902_2195 [Synechococcus sp. CC9902]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
VWA von Willebrand factor type A domain 8.2 0.024 1
Deme6 Breast cancer protein 4.0 0.44 1
TRM13 Methyltransferase TRM13 2.0 1.2 1
PLRV_ORF5 Potato leaf roll virus readthrough pr 2.0 1.3 1
DUF930 Domain of Unknown Function (DUF930) 3.8 1.5 1
DUF748 Domain of Unknown Function (DUF748) 4.3 1.5 1
DUF1761 Protein of unknown function (DUF1761) 2.3 2 1
SAB SAB domain 3.1 3.7 1
HDAC_interact Histone deacetylase (HDAC) interactin 2.7 3.8 1
CemA CemA family 1.8 4.1 1
DUF1006 Protein of unknown function (DUF1006) 0.3 4.8 1
Hydantoinase_A Hydantoinase/oxoprolinase 0.5 5.8 1
SURF5 Surfeit locus protein 5 0.7 6.5 1
Glyco_hydro_35 Glycosyl hydrolases family 35 -0.4 8.8 1
DUF260 Protein of unknown function DUF260 1.5 8.9 1
DUF2132 Uncharacterized conserved protein (DU 1.7 9 1
Uso1_p115_head Uso1 / p115 like vesicle tethering pr -0.5 9.1 1
PKD PKD domain 1.0 9.2 1
Phage_holin Phage lysis protein, holin 1.5 9.4 1
Peripla_BP_2 Periplasmic binding protein 0.2 9.6 1
Catalase Catalase -0.3 9.6 1
Adeno_knob Adenoviral fibre protein (knob domain -3.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SAB 1/1 39 61 .. 29 53 .] 3.1 3.7
CemA 1/1 60 69 .. 224 233 .] 1.8 4.1
DUF2132 1/1 142 148 .. 58 64 .] 1.7 9
Peripla_BP_2 1/1 250 268 .. 1 21 [. 0.2 9.6
Phage_holin 1/1 259 270 .. 14 25 .. 1.5 9.4
TRM13 1/1 320 334 .. 319 333 .] 2.0 1.2
SURF5 1/1 337 349 .. 85 97 .. 0.7 6.5
DUF748 1/1 357 382 .. 70 96 .. 4.3 1.5
PKD 1/1 449 464 .. 76 92 .] 1.0 9.2
PLRV_ORF5 1/1 766 796 .. 1 31 [. 2.0 1.3
VWA 1/1 811 826 .. 1 16 [. 8.2 0.024
HDAC_interact 1/1 859 885 .. 76 102 .] 2.7 3.8
DUF930 1/1 952 963 .. 92 102 .] 3.8 1.5
Deme6 1/1 988 1001 .. 1 14 [. 4.0 0.44
Hydantoinase_A 1/1 1008 1024 .. 90 106 .. 0.5 5.8
Glyco_hydro_35 1/1 1012 1021 .. 1 10 [. -0.4 8.8
DUF1761 1/1 1024 1033 .. 136 145 .] 2.3 2
Catalase 1/1 1060 1076 .. 373 390 .] -0.3 9.6
DUF260 1/1 1071 1091 .. 85 105 .] 1.5 8.9
DUF1006 1/1 1083 1094 .. 388 399 .] 0.3 4.8
Uso1_p115_head 1/1 1117 1131 .. 1 16 [. -0.5 9.1
Adeno_knob 1/1 1124 1138 .. 181 195 .] -3.3 9.9
Alignments of top-scoring domains:
SAB: domain 1 of 1, from 39 to 61: score 3.1, E = 3.7
*->snStpeprpnEWereKRLsThSPvr<-*
++S +pr+nE +R T SP+
gi|7818576 39 TSSLKAPRDNETN-HRRKQT-SPLV 61
CemA: domain 1 of 1, from 60 to 69: score 1.8, E = 4.1
*->lVAtYHnMnE<-*
lVAt Hn+n+
gi|7818576 60 LVATNHNIND 69
DUF2132: domain 1 of 1, from 142 to 148: score 1.7, E = 9
*->KVEaLYl<-*
KVEa+Yl
gi|7818576 142 KVEAIYL 148
Peripla_BP_2: domain 1 of 1, from 250 to 268: score 0.2, E = 9.6
CS -...-EEESSHHHHHHHHHTT
*->PlaqRiVvldgaltetllalG<-*
+ +++++g+++++l+++G
gi|7818576 250 F--KNVITIGGQVVDALYTVG 268
Phage_holin: domain 1 of 1, from 259 to 270: score 1.5, E = 9.4
*->tLaDAvstiist<-*
++ DA++t++s+
gi|7818576 259 QVVDALYTVGSI 270
TRM13: domain 1 of 1, from 320 to 334: score 2.0, E = 1.2
*->VppeVSLENVlLlAl<-*
++ V+LENV+L +
gi|7818576 320 TGNRVTLENVALNTY 334
SURF5: domain 1 of 1, from 337 to 349: score 0.7, E = 6.5
*->DLKqfLILnDFhs<-*
DLKqf ++ DF s
gi|7818576 337 DLKQFQVFKDFNS 349
DUF748: domain 1 of 1, from 357 to 382: score 4.3, E = 1.5
*->kvvpfaqplkaeLkvklkdleLagltP<-*
++++ ++++ ++++vk++d +La++ P
gi|7818576 357 NTNL-DVTVQSDGSVKFQDTSLANINP 382
PKD: domain 1 of 1, from 449 to 464: score 1.0, E = 9.2
CS EEETTCEEEEEEEEEEE
*->vsngvgsasattttvtV<-*
+s +vgs + t +t+t
gi|7818576 449 ASANVGSFTET-ATITF 464
PLRV_ORF5: domain 1 of 1, from 766 to 796: score 2.0, E = 1.3
*->VDgePgPsPsPsPtPtPtPqPfPkPtPaPvk<-*
VD PsPsPsP+P P P P P PtP P +
gi|7818576 766 VDTTTTPSPSPSPSPSPSPSPSPSPTPSPSA 796
VWA: domain 1 of 1, from 811 to 826: score 8.2, E = 0.024
CS EEEEEEE-CTTS-HHH
*->DivFllDgSgSigeen<-*
D+++llD+S S+++++
gi|7818576 811 DVYLLLDTSTSMRHSE 826
HDAC_interact: domain 1 of 1, from 859 to 885: score 2.7, E = 3.8
*->EsnsstIklLeellekinnmsleeksk<-*
+s+ +++lL++l++++++ + e +
gi|7818576 859 NSTITSTQLLQTLANQTSTQAIQELDN 885
DUF930: domain 1 of 1, from 952 to 963: score 3.8, E = 1.5
*->seWdkygLP.vd<-*
s+W+++gLP+ +
gi|7818576 952 SKWKELGLPdPN 963
Deme6: domain 1 of 1, from 988 to 1001: score 4.0, E = 0.44
CS XXXXXXXXXXXXXX
*->lqAldlfLndrfde<-*
l++l+++Ln+++++
gi|7818576 988 LEGLNYLLNNKAND 1001
Hydantoinase_A: domain 1 of 1, from 1008 to 1024: score 0.5, E = 5.8
*->STDvsliidGepeisse<-*
ST++sli dG+pe+ s+
gi|7818576 1008 STKISLILDGRPERRSW 1024
Glyco_hydro_35: domain 1 of 1, from 1012 to 1021: score -0.4, E = 8.8
*->sFllDGqpfr<-*
s++lDG+p r
gi|7818576 1012 SLILDGRPER 1021
DUF1761: domain 1 of 1, from 1024 to 1033: score 2.3, E = 2
*->WWGTRtnpfe<-*
WW TRtn +
gi|7818576 1024 WWDTRTNSAS 1033
Catalase: domain 1 of 1, from 1060 to 1076: score -0.3, E = 9.6
CS CTTTSS-SSSSTSSSTCB
*->gndgsavnYePNSfdgpq<-*
+n+g+ ++ ++N ++++q
gi|7818576 1060 DNKGN-PHFFKNNQGQWQ 1076
DUF260: domain 1 of 1, from 1071 to 1091: score 1.5, E = 8.9
*->saLqqqlaqlqaeLalvkaql<-*
+++q+q + q++L+++ l
gi|7818576 1071 NQGQWQWKAMQNDLNAALDRL 1091
DUF1006: domain 1 of 1, from 1083 to 1094: score 0.3, E = 4.8
*->aLaaeLrrlArW<-*
+L a+L+rlA++
gi|7818576 1083 DLNAALDRLATY 1094
Uso1_p115_head: domain 1 of 1, from 1117 to 1131: score -0.5, E = 9.1
*->GNarnQeeFakivLDn<-*
Na+ Q++F+++ Dn
gi|7818576 1117 -NATYQDLFSNQSFDN 1131
Adeno_knob: domain 1 of 1, from 1124 to 1138: score -3.3, E = 9.9
CS CTTS--BB--EEEEE
*->YtnvpFdtssfTFSY<-*
++n+ Fd ss + SY
gi|7818576 1124 FSNQSFDNSSSSWSY 1138
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