hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 78189014.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|78189014|ref|YP_379352.1|
Accession: [none]
Description: hypothetical protein Cag_1047 [Chlorobium chlorochromatii CaD3]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ELM2 ELM2 domain 9.1 0.033 3
Pardaxin Pardaxin 5.8 0.5 1
RyR RyR domain 5.1 1.1 1
Peptidase_C24 2C endopeptidase (C24) cysteine prote 2.2 1.4 1
ATP-synt_E ATP synthase E chain 3.0 2.6 1
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (an 3.2 4 1
Glucosaminidase Mannosyl-glycoprotein endo-beta-N-ace 2.0 4.6 1
A2M Alpha-2-macroglobulin family 1.4 5.3 2
VDRIP Vitamin-D-receptor interacting protei -0.6 5.3 1
Pox_D2 Pox virus D2 protein 0.1 6.3 1
DUF2066 Uncharacterized protein conserved in 0.9 8.8 1
ETF_alpha Electron transfer flavoprotein FAD-bi 1.5 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_D2 1/1 3 9 .. 154 160 .] 0.1 6.3
ATP-synt_E 1/1 54 64 .. 1 11 [. 3.0 2.6
VDRIP 1/1 95 105 .. 1 11 [. -0.6 5.3
Glucosaminidase 1/1 100 122 .. 1 23 [. 2.0 4.6
Pardaxin 1/1 146 160 .. 19 33 .] 5.8 0.5
RyR 1/1 162 171 .. 86 95 .] 5.1 1.1
ETF_alpha 1/1 171 190 .. 21 40 .. 1.5 9.1
DUF2066 1/1 211 224 .. 243 256 .] 0.9 8.8
A2M 1/2 261 279 .. 1 27 [. 0.7 8.9
ELM2 1/3 288 295 .. 1 8 [. 1.1 12
A2M 2/2 320 338 .. 1 27 [. 0.7 8.9
ELM2 2/3 347 354 .. 1 8 [. 1.1 12
zf-CCCH 1/1 389 396 .. 20 27 .] 3.2 4
ELM2 3/3 403 410 .. 1 8 [. 6.9 0.18
Peptidase_C24 1/1 422 458 .. 48 85 .. 2.2 1.4
Alignments of top-scoring domains:
Pox_D2: domain 1 of 1, from 3 to 9: score 0.1, E = 6.3
*->vpYYYLP<-*
+pYY +P
gi|7818901 3 CPYYNRP 9
ATP-synt_E: domain 1 of 1, from 54 to 64: score 3.0, E = 2.6
*->mspVaVSPlin<-*
m+++++SPl++
gi|7818901 54 MATNSSSPLVR 64
VDRIP: domain 1 of 1, from 95 to 105: score -0.6, E = 5.3
*->STkerLLeslD<-*
ST++ L++++D
gi|7818901 95 STRDGLVQIAD 105
Glucosaminidase: domain 1 of 1, from 100 to 122: score 2.0, E = 4.6
*->laqaaqkaaqqyglnesllIAQA<-*
l+q+a+ +a q +++++ + +++
gi|7818901 100 LVQIADLLAGQTDIDSLHIFSHG 122
Pardaxin: domain 1 of 1, from 146 to 160: score 5.8, E = 0.5
*->LsAvGsALsssGeqE<-*
Ls +Gs LsssG+
gi|7818901 146 LSVIGSSLSSSGDIL 160
RyR: domain 1 of 1, from 162 to 171: score 5.1, E = 1.1
*->yGynverade<-*
yG+nv+++de
gi|7818901 162 YGCNVGAGDE 171
ETF_alpha: domain 1 of 1, from 171 to 190: score 1.5, E = 9.1
CS GGGHHHHHHHHHHT-EEEE-
*->EnFklleeLAdvLGAeVGaS<-*
E+++ + LA++ GA V+aS
gi|7818901 171 EGLAFVDKLAKMTGADVAAS 190
DUF2066: domain 1 of 1, from 211 to 224: score 0.9, E = 8.8
*->mmdaladylAsrYA<-*
++d+++ y+A+ YA
gi|7818901 211 VIDEASFYYAPEYA 224
A2M: domain 1 of 2, from 261 to 279: score 0.7, E = 8.9
*->TWLWedvevlgcPdqkpscssGsatlt<-*
TW+ e++e+l+ s+ +++++
gi|7818901 261 TWISETLETLS--------SDTHTDIH 279
ELM2: domain 1 of 3, from 288 to 295: score 1.1, E = 12
*->IrVGseyQ<-*
+VGse+Q
gi|7818901 288 AMVGSEFQ 295
A2M: domain 2 of 2, from 320 to 338: score 0.7, E = 8.9
*->TWLWedvevlgcPdqkpscssGsatlt<-*
TW+ e++e+l+ s+ +++++
gi|7818901 320 TWISETLETLS--------SDTHTDIH 338
ELM2: domain 2 of 3, from 347 to 354: score 1.1, E = 12
*->IrVGseyQ<-*
+VGse+Q
gi|7818901 347 AMVGSEFQ 354
zf-CCCH: domain 1 of 1, from 389 to 396: score 3.2, E = 4
CS S-SS-SS-
*->rCkFaHge<-*
+C+++Hg+
gi|7818901 389 NCNYIHGQ 396
ELM2: domain 3 of 3, from 403 to 410: score 6.9, E = 0.18
*->IrVGseyQ<-*
I+VGse+Q
gi|7818901 403 IMVGSEFQ 410
Peptidase_C24: domain 1 of 1, from 422 to 458: score 2.2, E = 1.4
*->lsavqigsGkPvkdttgsPvstewkektyeTttgkidG<-*
+s+++++ G v t+ s ++t+wk + +T++ i+G
gi|7818901 422 PSVAALADGGFVV-TWESGIVTTWKSGYQDTSNSDIYG 458
//