hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 78189205.fa
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Query sequence: gi|78189205|ref|YP_379543.1|
Accession: [none]
Description: VCBS [Chlorobium chlorochromatii CaD3]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKD PKD domain 31.5 3.9e-09 5
SoxZ Sulphur oxidation protein SoxZ 13.1 0.0019 3
BiPBP_C Penicillin-Binding Protein C-terminus 13.6 0.0025 3
Flagellin_IN Flagellin hook IN motif 14.3 0.0036 3
Dockerin_1 Dockerin type I repeat 12.0 0.014 1
He_PIG Putative Ig domain 10.3 0.04 6
EMP24_GP25L emp24/gp25L/p24 family/GOLD 8.4 0.065 1
Cadherin Cadherin domain 8.1 0.13 3
Big_1 Bacterial Ig-like domain (group 1) 5.7 0.21 2
Big_2 Bacterial Ig-like domain (group 2) 6.7 0.29 3
KH_1 KH domain 6.5 0.31 1
BNR BNR/Asp-box repeat 8.2 0.37 2
She9_MDM33 She9 / Mdm33 family 4.4 0.4 1
efhand EF hand 8.1 0.46 1
SCPU Spore Coat Protein U domain 5.8 0.7 2
UPF0086 Domain of unknown function UPF0086 5.0 0.77 1
Peptidase_C1_2 Peptidase C1-like family 2.0 0.89 1
PQQ PQQ enzyme repeat 5.5 1 1
YycH YycH protein 2.7 1 1
Peptidase_S6 Immunoglobulin A1 protease 1.9 1.3 1
BAT2_N BAT2 N-terminus 3.0 1.3 1
DUF1111 Protein of unknown function (DUF1111) 1.6 1.4 1
Ala_racemase_C Alanine racemase, C-terminal domain 4.5 1.4 1
Spore_permease Spore germination protein 2.7 1.7 1
HYR HYR domain 3.8 1.7 1
Adeno_knob Adenoviral fibre protein (knob domain -1.7 1.8 1
Reovirus_M2 Reovirus major virion structural prot -0.2 2.1 1
TraY TraY family 3.9 2.1 1
Baculo_p74_N Baculoviridae P74 N-terminal 2.1 2.1 1
Invasin_D3 Invasin, domain 3 2.8 2.7 1
RIB43A RIB43A -0.3 2.9 1
DUF2089 Uncharacterized protein conserved in 1.5 3.4 1
UPF0158 Uncharacterised protein family (UPF01 1.0 3.4 1
DUF1471 Protein of unknown function (DUF1471) 3.0 3.7 1
Cadherin_pro Cadherin prodomain like 2.9 3.8 2
DUF1235 Protein of unknown function (DUF1235) -0.5 3.9 1
DUF91 Protein of unknown function DUF91 1.7 4 1
MtrA Tetrahydromethanopterin S-methyltrans 1.2 4.6 1
Rhodanese Rhodanese-like domain 1.5 4.8 1
Chlam_PMP Chlamydia polymorphic membrane protei 4.9 4.9 1
Fork_head Fork head domain 2.5 5.2 1
PHP PHP domain 1.2 5.2 1
Arch_flagellin Archaebacterial flagellin 1.1 5.2 1
Secretin_N Bacterial type II/III secretion syste 3.2 5.4 1
AbfB Alpha-L-arabinofuranosidase B (ABFB) 1.2 5.5 1
EHN Epoxide hydrolase N terminus 1.7 5.9 1
Spindle_Spc25 Chromosome segregation protein (Spc25 2.6 6.5 1
DUF1608 Protein of unknown function (DUF1608) 0.6 6.6 1
Antig_Caf1 Caf1 Capsule antigen 0.4 6.7 1
DUF291 Domain of unknown function 2.8 6.9 2
Reo_P9 Reovirus P9-like family -0.9 6.9 1
DUF1177 Protein of unknown function (DUF1177) 0.1 7 1
DUF2379 Protein of unknown function (DUF2379) 1.9 7.2 1
TYA TYA transposon protein 1.3 7.5 1
Pox_RNA_pol Poxvirus DNA-directed RNA polymerase, 1.2 7.5 1
Atg31 Autophagy-related protein 31 0.2 8 1
G5 G5 domain 1.9 8 1
DUF2309 Uncharacterized protein conserved in -1.1 8.1 1
DUF1735 Domain of unknown function (DUF1735) 2.2 8.2 1
NADH_dehy_S2_C NADH dehydrogenase subunit 2 C-termin 3.3 8.8 1
Methyltransf_6 Demethylmenaquinone methyltransferase 0.5 8.9 1
CARDB CARDB 1.5 9.7 1
Cupin_2 Cupin domain 1.2 9.8 1
DUF1679 Protein of unknown function (DUF1679) -0.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
She9_MDM33 1/1 20 55 .. 1 35 [. 4.4 0.4
BAT2_N 1/1 33 57 .. 1 24 [. 3.0 1.3
Chlam_PMP 1/1 68 94 .. 1 19 [] 4.9 4.9
G5 1/1 165 192 .. 1 29 [. 1.9 8
EHN 1/1 225 244 .. 1 20 [. 1.7 5.9
Ala_racemase_C 1/1 256 277 .. 1 22 [. 4.5 1.4
Baculo_p74_N 1/1 272 283 .. 297 308 .] 2.1 2.1
Arch_flagellin 1/1 282 289 .. 1 9 [. 1.1 5.2
UPF0158 1/1 337 383 .. 1 52 [. 1.0 3.4
Invasin_D3 1/1 340 353 .. 1 15 [. 2.8 2.7
Secretin_N 1/1 378 404 .. 41 68 .. 3.2 5.4
KH_1 1/1 387 403 .. 74 93 .] 6.5 0.31
Big_1 1/2 399 422 .. 1 32 [. 0.8 7.9
DUF1608 1/1 498 523 .. 305 328 .] 0.6 6.6
DUF2379 1/1 504 516 .. 41 53 .. 1.9 7.2
PQQ 1/1 518 543 .. 11 37 .] 5.5 1
DUF2309 1/1 520 539 .. 862 881 .] -1.1 8.1
NADH_dehy_S2_C 1/1 632 642 .. 45 55 .] 3.3 8.8
Peptidase_C1_2 1/1 719 758 .. 1 40 [. 2.0 0.89
Cadherin 1/3 741 768 .. 77 107 .] 4.3 1.6
UPF0086 1/1 802 817 .. 66 81 .. 5.0 0.77
YycH 1/1 810 828 .. 464 488 .] 2.7 1
BNR 1/2 830 841 .. 1 12 [] 6.6 1.1
DUF1471 1/1 842 852 .. 77 88 .] 3.0 3.7
PHP 1/1 850 862 .. 222 234 .] 1.2 5.2
CARDB 1/1 868 893 .. 51 78 .. 1.5 9.7
DUF291 1/2 901 908 .. 85 92 .] 1.6 14
MtrA 1/1 981 1007 .. 158 184 .] 1.2 4.6
Atg31 1/1 988 998 .. 1 12 [. 0.2 8
SoxZ 1/3 988 1010 .. 82 104 .] 3.0 2.3
He_PIG 1/6 989 999 .. 51 61 .] 1.0 17
BiPBP_C 1/3 990 1008 .. 77 94 .] 3.7 1.8
Big_2 1/3 991 1008 .. 74 90 .] 1.3 11
PKD 1/5 991 1010 .. 73 92 .] 9.2 0.028
BNR 2/2 1028 1036 .. 1 9 [. 1.6 38
SoxZ 2/3 1036 1049 .. 91 104 .] 1.7 6
DUF1735 1/1 1241 1253 .. 53 65 .] 2.2 8.2
Spore_permease 1/1 1243 1272 .. 299 330 .] 2.7 1.7
Fork_head 1/1 1254 1263 .. 1 11 [. 2.5 5.2
DUF1235 1/1 1282 1298 .. 136 152 .. -0.5 3.9
TYA 1/1 1296 1322 .. 18 42 .. 1.3 7.5
Cupin_2 1/1 1321 1339 .. 54 74 .] 1.2 9.8
He_PIG 2/6 1386 1398 .. 49 61 .] 0.9 18
Peptidase_S6 1/1 1393 1413 .. 899 919 .] 1.9 1.3
SCPU 1/2 1452 1463 .. 58 69 .] 0.0 31
DUF1111 1/1 1466 1477 .. 1 12 [. 1.6 1.4
Reovirus_M2 1/1 1509 1521 .. 1 13 [. -0.2 2.1
DUF1177 1/1 1519 1549 .. 1 41 [. 0.1 7
PKD 2/5 1520 1537 .. 74 92 .] 6.0 0.26
Flagellin_IN 1/3 1534 1563 .. 1 30 [. 5.9 0.85
Pox_RNA_pol 1/1 1562 1571 .. 110 119 .. 1.2 7.5
AbfB 1/1 1579 1593 .. 147 161 .] 1.2 5.5
Reo_P9 1/1 1598 1613 .. 341 356 .] -0.9 6.9
Rhodanese 1/1 1605 1619 .. 114 128 .] 1.5 4.8
EMP24_GP25L 1/1 1640 1694 .. 17 64 .. 8.4 0.065
SoxZ 3/3 1643 1669 .. 80 104 .] 8.4 0.051
Adeno_knob 1/1 1646 1651 .. 190 195 .] -1.7 1.8
He_PIG 3/6 1648 1660 .. 49 61 .] 4.2 2.1
Big_1 2/2 1650 1669 .. 86 106 .] 4.9 0.38
Big_2 2/3 1650 1667 .. 72 90 .] 4.5 1.2
BiPBP_C 2/3 1651 1667 .. 77 94 .] 2.1 5.3
Cadherin 2/3 1652 1672 .. 78 107 .] 1.5 10
PKD 3/5 1652 1671 .. 73 92 .] 9.1 0.03
HYR 1/1 1654 1671 .. 68 86 .] 3.8 1.7
Antig_Caf1 1/1 1753 1769 .. 120 136 .] 0.4 6.7
SCPU 2/2 1755 1765 .. 59 69 .] 5.8 0.71
Big_2 3/3 1761 1777 .. 74 90 .] 0.9 14
Cadherin 3/3 1761 1782 .. 76 107 .] 2.3 6
Cadherin_pro 1/2 1761 1781 .. 72 94 .] 2.6 4.7
He_PIG 4/6 1761 1771 .. 51 61 .] 1.7 11
PKD 4/5 1763 1781 .. 73 92 .] 4.4 0.8
DUF1679 1/1 1828 1837 .. 417 426 .] -0.2 10
Cadherin_pro 2/2 1896 1914 .. 73 94 .] 0.3 20
He_PIG 5/6 1896 1905 .. 52 61 .] 0.1 31
Flagellin_IN 2/3 1911 1934 .. 1 31 [. 1.5 14
DUF291 2/2 1993 2002 .. 81 92 .] 1.2 18
He_PIG 6/6 2020 2030 .. 51 61 .] 2.3 7
BiPBP_C 3/3 2021 2039 .. 77 94 .] 7.7 0.13
Flagellin_IN 3/3 2022 2051 .. 1 32 [. 6.9 0.44
PKD 5/5 2022 2041 .. 73 92 .] 2.8 2.5
DUF91 1/1 2081 2103 .. 203 234 .] 1.7 4
Spindle_Spc25 1/1 2084 2118 .. 1 34 [. 2.6 6.5
RIB43A 1/1 2097 2111 .. 1 15 [. -0.3 2.9
TraY 1/1 2256 2270 .. 109 123 .] 3.9 2.1
efhand 1/1 2309 2337 .. 1 29 [] 8.1 0.46
Dockerin_1 1/1 2318 2333 .. 1 16 [. 12.0 0.014
DUF2089 1/1 2321 2335 .. 105 119 .] 1.5 3.4
Methyltransf_6 1/1 2390 2399 .. 176 185 .] 0.5 8.9
Alignments of top-scoring domains:
She9_MDM33: domain 1 of 1, from 20 to 55: score 4.4, E = 0.4
*->aklakklekY.lDSvqeTiLtAtraLNdvTGYSsIe<-*
+++a e Y lDS + iL+ t aL GYSs +
gi|7818920 20 SRFAVGTEYYvLDSERDGILQITEALAGKSGYSSLQ 55
BAT2_N: domain 1 of 1, from 33 to 57: score 3.0, E = 1.3
*->MSersG..qstkgkDGKsKYsaLsLF<-*
Ser G q+t++ GKs Ys+L +F
gi|7818920 33 -SERDGilQITEALAGKSGYSSLQIF 57
Chlam_PMP: domain 1 of 1, from 68 to 94: score 4.9, E = 4.9
*->ditFsgNsa........aggGGAiyas<-*
++t +N+a ++ + + a+ GGA+ as
gi|7818920 68 GSTVLNNAAlsnytaqlAAIGGALTAS 94
G5: domain 1 of 1, from 165 to 192: score 1.9, E = 8
CS XXXXXXXXXXXX.XXXXXXXXXXXXXXXX
*->rvtekketeeeekIpFetvrkeDpnLpkG<-*
+ +++++t + + +p e +++ ++n +G
gi|7818920 165 VLEPPTTTITIT-LPTEAEIRNNSNIDQG 192
EHN: domain 1 of 1, from 225 to 244: score 1.7, E = 5.9
*->rPFsisvpdedlddLkrrLr<-*
++F isv+ +++ Lk++++
gi|7818920 225 TSFVISVSYGKISFLKTKVD 244
Ala_racemase_C: domain 1 of 1, from 256 to 277: score 4.5, E = 1.4
CS -EEEEEE-SEEEEE-TT-EESG
*->vmtLkarviqvrevpaGesVGY<-*
+tL+ ++q+r++ +++Y
gi|7818920 256 TVTLTGTITQIRTLLTNNTISY 277
Baculo_p74_N: domain 1 of 1, from 272 to 283: score 2.1, E = 2.1
*->ntklvYtAevGF<-*
n++++Y+ ++GF
gi|7818920 272 NNTISYVGNTGF 283
Arch_flagellin: domain 1 of 1, from 282 to 289: score 1.1, E = 5.2
*->GfsGsigtl<-*
GfsG i+tl
gi|7818920 282 GFSG-IETL 289
UPF0158: domain 1 of 1, from 337 to 383: score 1.0, E = 3.4
*->qrPllldvlRLelAFakdddeiDfYlDlveGkvLlIdldkddedLDk
ll dv e F ++d++i +Y+ + vL l +dLD
gi|7818920 337 ---LLNDVF--EGSFTLSDPDIAHYIMQADITVLHGTLKLSGDDLDS 378
lleel<-*
+ ++
gi|7818920 379 VTGNE 383
Invasin_D3: domain 1 of 1, from 340 to 353: score 2.8, E = 2.7
CS --TTT-EEEES-SEE
*->PDvtrSSFtVStsDI<-*
Dv SFt S +DI
gi|7818920 340 -DVFEGSFTLSDPDI 353
Secretin_N: domain 1 of 1, from 378 to 404: score 3.2, E = 5.4
*->rvtadertnslivsGppeyvelvrelie<-*
+vt +e t s+ ++G+++++el++ ++
gi|7818920 378 SVTGNE-TKSVTITGSRANIELAITALQ 404
KH_1: domain 1 of 1, from 387 to 403: score 6.5, E = 0.31
CS EEEEESCHHHHHHHHH..HH
*->vtIsGstpeavekAkerflI<-*
vtI+G +++++e A+ ++
gi|7818920 387 VTITG-SRANIELAIT--AL 403
Big_1: domain 1 of 2, from 399 to 422: score 0.8, E = 7.9
CS XGGEEEEECCEEEES-SEEESSSS--EEEEEE
*->ivdqltAsitsiiadkttavAngndaiTlTAt<-*
++ l+ ++++ + ng+d+ T+T++
gi|7818920 399 AITALQYTPDENY--------NGSDTLTVTVN 422
DUF1608: domain 1 of 1, from 498 to 523: score 0.6, E = 6.6
*->DsitLwrdddKidft...gdiyFktaD<-*
DsitL+ ++d d+t+ ++iy++ D
gi|7818920 498 DSITLDAITD-EDVTsalQSIYITAVD 523
DUF2379: domain 1 of 1, from 504 to 516: score 1.9, E = 7.2
*->AIsdaDaeqALat<-*
AI+d+D+++AL++
gi|7818920 504 AITDEDVTSALQS 516
PQQ: domain 1 of 1, from 518 to 543: score 5.5, E = 1
CS EEEEEETTTTSEEEEEESSSGGGS GEE
*->ylyAlDakTGkvlWkfktggpvds.pvt<-*
y++A+D ++Gk W+fk++g+ ++++t
gi|7818920 518 YITAVDSTNGK--WQFKLDGQTTWsTIT 543
DUF2309: domain 1 of 1, from 520 to 539: score -1.1, E = 8.1
*->vaidpdqgkaalryvgggtW<-*
+a+d+++gk ++ +g+ tW
gi|7818920 520 TAVDSTNGKWQFKLDGQTTW 539
NADH_dehy_S2_C: domain 1 of 1, from 632 to 642: score 3.3, E = 8.8
*->fnlpllPaLls<-*
f+ p++Pa+++
gi|7818920 632 FSAPITPAITT 642
Peptidase_C1_2: domain 1 of 1, from 719 to 758: score 2.0, E = 0.89
CS SSHHHHHCHHHHHHCC-HHHHCCCHCCTTSSHHCHHBSCH
*->eLtteklekFsknfnadPknqvaqnAatrnGlleAslnrq<-*
+++ ++ ++++ ++n++ + ++++ +a+ n+ ++ ++++
gi|7818920 719 TISESQDASWTPELNKNGILNAFTVVAKDNDTTDSKESTT 758
Cadherin: domain 1 of 3, from 741 to 768: score 4.3, E = 1.6
CS -EEE----.........S---EEE E--EEE-
*->LtveAtDadpllasgggpplssta...tvtitVl<-*
+tv+A+D+d + +++st+++ tvti+++
gi|7818920 741 FTVVAKDND------TTDSKESTTpsvTVTINLT 768
UPF0086: domain 1 of 1, from 802 to 817: score 5.0, E = 0.77
CS TT...TEEEEEEGGGC
*->kdLDtGkkVkIDGrlL<-*
+d+DtG +Vk+DG+ L
gi|7818920 802 SDVDTGDIVKVDGDWL 817
YycH: domain 1 of 1, from 810 to 828: score 2.7, E = 1
*->vkynGkWekitkdllykegAekggE<-*
vk++G W l+ +A++g E
gi|7818920 810 VKVDGDW------LADESAANDGEE 828
BNR: domain 1 of 2, from 830 to 841: score 6.6, E = 1.1
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
++S DgGkT +
gi|7818920 830 WTSSDGGKTYTF 841
DUF1471: domain 1 of 1, from 842 to 852: score 3.0, E = 3.7
*->ngnwhatAdiYk<-*
+g ++tA +Y+
gi|7818920 842 DG-SYGTATLYR 852
PHP: domain 1 of 1, from 850 to 862: score 1.2, E = 5.2
CS ..EEEE--BSSGG
RF xxxxxxxxxxxxx
*->lpvvatsDaHyps<-*
l vat+D H+++
gi|7818920 850 LYRVATTDGHSAG 862
CARDB: domain 1 of 1, from 868 to 893: score 1.5, E = 9.7
*->ls.gtvtVGdipsLaaGesttvsfswtpe<-*
++ +++++ sLaa++++t sf+++++
gi|7818920 868 FDyADTDL---DSLAANATATDSFTIVVS 893
DUF291: domain 1 of 2, from 901 to 908: score 1.6, E = 14
*->TadpvLtv<-*
Tad+v+t+
gi|7818920 901 TADAVFTI 908
MtrA: domain 1 of 1, from 981 to 1007: score 1.2, E = 4.6
*->DpGAfeeeplvieieeGeGeeeeeegv<-*
D G+ + e ++i +++G G+ + +
gi|7818920 981 DDGESDIESFTITVSDGDGGSATQDVT 1007
Atg31: domain 1 of 1, from 988 to 998: score 0.2, E = 8
*->MEplvlTVydkN<-*
E++++TV+d +
gi|7818920 988 -ESFTITVSDGD 998
SoxZ: domain 1 of 3, from 988 to 1010: score 3.0, E = 2.3
CS E.EEEEEEETTS-EEEEEEEE--
*->delkfsWtDnkGssetaeakItv<-*
++++++ D +G+s t +++Itv
gi|7818920 988 ESFTITVSDGDGGSATQDVTITV 1010
He_PIG: domain 1 of 6, from 989 to 999: score 1.0, E = 17
*->tftvtatdgsg<-*
+ft+t++dg g
gi|7818920 989 SFTITVSDGDG 999
BiPBP_C: domain 1 of 3, from 990 to 1008: score 3.7, E = 1.8
*->htLtVvDadGrsdrv.Vrf<-*
+t+tV D+dG s++ +V++
gi|7818920 990 FTITVSDGDGGSATQdVTI 1008
Big_2: domain 1 of 3, from 991 to 1008: score 1.3, E = 11
CS EEEEEETT .TEEEEEEE
*->tItatsgd.gnksasvtv<-*
tIt+ gd+g+ + +vt+
gi|7818920 991 TITVSDGDgGSATQDVTI 1008
PKD: domain 1 of 5, from 991 to 1010: score 9.2, E = 0.028
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t tvs+g g ++++++t+tV
gi|7818920 991 TITVSDGDGGSATQDVTITV 1010
BNR: domain 2 of 2, from 1028 to 1036: score 1.6, E = 38
CS EEESSTTSS
*->yyStDgGkT<-*
y+++DgG++
gi|7818920 1028 YVTEDGGIN 1036
SoxZ: domain 2 of 3, from 1036 to 1049: score 1.7, E = 6
CS TTS-EEEEEEEE--
*->nkGssetaeakItv<-*
n+G+ +t +a+I+v
gi|7818920 1036 NNGTAGTSSAHIDV 1049
DUF1735: domain 1 of 1, from 1241 to 1253: score 2.2, E = 8.2
*->eegleldknYvLP<-*
+e + ++nY+LP
gi|7818920 1241 SEFGAIPSNYFLP 1253
Spore_permease: domain 1 of 1, from 1243 to 1272: score 2.7, E = 1.7
*->Fkkknkssayllviligiifiissipknsnfv<-*
F+ ++++ y+l+ ++ ++ +i+ ++ ++n+v
gi|7818920 1243 FGAIPSN--YFLPPPFSFTSLITGVLGDQNDV 1272
Fork_head: domain 1 of 1, from 1254 to 1263: score 2.5, E = 5.2
CS HHHHHHHHHTT
*->KPPYSYiaLIt<-*
PP+S+ +LIt
gi|7818920 1254 -PPFSFTSLIT 1263
DUF1235: domain 1 of 1, from 1282 to 1298: score -0.5, E = 3.9
*->YdVtqVtkGsliiivle<-*
Y+ ++V++G+l+++++e
gi|7818920 1282 YTLSNVVSGTLVFAAIE 1298
TYA: domain 1 of 1, from 1296 to 1322: score 1.3, E = 7.5
*->dvSASkleEfekdsTkanSQ..qetTP<-*
++ S ++E+ +++T an Q +q+ TP
gi|7818920 1296 AIESSAFPEYANVYTSANLQlrQPITP 1322
Cupin_2: domain 1 of 1, from 1321 to 1339: score 1.2, E = 9.8
CS -EEEEE--SSS.-EEEEEEEE
*->vpHrfrNtgdeeparldlvvy<-*
+p + Nt+d+ ar+ l ++
gi|7818920 1321 TPRIISNTTDG-NARI-LAWF 1339
He_PIG: domain 2 of 6, from 1386 to 1398: score 0.9, E = 18
*->sytftvtatdgsg<-*
++++tv+atdg
gi|7818920 1386 TWSYTVSATDGTA 1398
Peptidase_S6: domain 1 of 1, from 1393 to 1413: score 1.9, E = 1.3
*->agdgnvsvtlkahslftlsgs<-*
a+dg+ s t+++++ ft +g
gi|7818920 1393 ATDGTASTTSTESVSFTITGE 1413
SCPU: domain 1 of 2, from 1452 to 1463: score 0.0, E = 31
*->pAGtYqDTlsVt<-*
++ t+ DT++Vt
gi|7818920 1452 DPDTHDDTVTVT 1463
DUF1111: domain 1 of 1, from 1466 to 1477: score 1.6, E = 1.4
*->ytditalGGdtT<-*
+ i+++GGdtT
gi|7818920 1466 LDSISWSGGDTT 1477
Reovirus_M2: domain 1 of 1, from 1509 to 1521: score -0.2, E = 2.1
CS XXXXXXXXBXTTS
*->GtvssiVnTiNvT<-*
G ++V T+NvT
gi|7818920 1509 GEDETVVLTYNVT 1521
DUF1177: domain 1 of 1, from 1519 to 1549: score 0.1, E = 7
*->evtevtgeppEdkgsTDFikilipGtnGklsGGdaptlGIi<-*
vt +g + TD ++i+i+Gtn d pt+ ++
gi|7818920 1519 NVTASDGT----ESDTDTVTITIEGTN------DTPTVDVV 1549
PKD: domain 2 of 5, from 1520 to 1537: score 6.0, E = 0.26
CS EEEEETTCEEEEEEEEEEE
*->LtvsngvgsasattttvtV<-*
+t+s+g s++ t +t+t+
gi|7818920 1520 VTASDGTESDTDT-VTITI 1537
Flagellin_IN: domain 1 of 3, from 1534 to 1563: score 5.9, E = 0.85
*->tltinggggkensvadgvdislsagdslaa<-*
t+ti+g++ + ++++ + i+++ +d+l++
gi|7818920 1534 TITIEGTNDTPTVDVVETSITFAEDDTLSD 1563
Pox_RNA_pol: domain 1 of 1, from 1562 to 1571: score 1.2, E = 7.5
*->rDsGTVSFnd<-*
+DsGTVSF+d
gi|7818920 1562 SDSGTVSFSD 1571
AbfB: domain 1 of 1, from 1579 to 1593: score 1.2, E = 5.5
CS G-STTHHHHT-EEEE
*->dattsFrdDatFvve<-*
d t+s+++D+++ +
gi|7818920 1579 DVTESYNNDIAWSYS 1593
Reo_P9: domain 1 of 1, from 1598 to 1613: score -0.9, E = 6.9
*->vskvikvDlSkidfdv<-*
++++i D+S + ++
gi|7818920 1598 TDEMIGEDISTLTNGF 1613
Rhodanese: domain 1 of 1, from 1605 to 1619: score 1.5, E = 4.8
CS EEEEETCHHHHHHHT
*->eVyiLkGGykeWlak<-*
+++ L +G+++W+++
gi|7818920 1605 DISTLTNGFTAWGED 1619
EMP24_GP25L: domain 1 of 1, from 1640 to 1694: score 8.4, E = 0.065
*->elkkkgtkvtgsYqVi...........didvtvkdPfdngkrvlykk
+l+ +g+++t+sY V +++++ + +++i+vt+++ + + ++++
gi|7818920 1640 FLD-AGETLTFSYTVTatdnngasatdTITVTITGSN--DT-PHFNQ 1682
erkseGdftFta<-*
+++ +G +t t+
gi|7818920 1683 DSVDNGSVTDTS 1694
SoxZ: domain 3 of 3, from 1643 to 1669: score 8.4, E = 0.051
CS -EE.EEEEE EETTS-EEEEEEEE--
*->aGdelkfsW....tDnkGssetaeakItv<-*
aG++l+fs++ + tDn+G s t++ Itv
gi|7818920 1643 AGETLTFSYtvtaTDNNGASATDT--ITV 1669
Adeno_knob: domain 1 of 1, from 1646 to 1651: score -1.7, E = 1.8
CS -EEEEE
*->sfTFSY<-*
++TFSY
gi|7818920 1646 TLTFSY 1651
He_PIG: domain 3 of 6, from 1648 to 1660: score 4.2, E = 2.1
*->sytftvtatdgsg<-*
++++tvtatd g
gi|7818920 1648 TFSYTVTATDNNG 1660
Big_1: domain 2 of 2, from 1650 to 1669: score 4.9, E = 0.38
CS EEEEEEEET.TECEEEEEEEE
*->tytVtAslanngatsvdaktV<-*
+ytVtA+ + nga++ d tV
gi|7818920 1650 SYTVTATDN-NGASATDTITV 1669
Big_2: domain 2 of 3, from 1650 to 1667: score 4.5, E = 1.2
CS -EEEEEEETT.TEEEEEEE
*->tatItatsgdgnksasvtv<-*
+ t+tat ++ + sa+ t+
gi|7818920 1650 SYTVTATDNN-GASATDTI 1667
BiPBP_C: domain 2 of 3, from 1651 to 1667: score 2.1, E = 5.3
*->htLtVvDadGrsdrvVrf<-*
+t+t++D +G+s++ ++
gi|7818920 1651 YTVTATDNNGASATD-TI 1667
Cadherin: domain 2 of 3, from 1652 to 1672: score 1.5, E = 10
CS EEE----.........S---EEEE--EEE-
*->tveAtDadpllasgggpplsstatvtitVl<-*
tv AtD+ + s+t t+t+t++
gi|7818920 1652 TVTATDN---------NGASATDTITVTIT 1672
PKD: domain 3 of 5, from 1652 to 1671: score 9.1, E = 0.03
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t+t+++++g++++ t+tvt+
gi|7818920 1652 TVTATDNNGASATDTITVTI 1671
HYR: domain 1 of 1, from 1654 to 1671: score 3.8, E = 1.7
*->tatDnaGNeAdsCtFtVtV<-*
tatDn+G +A + t tVt+
gi|7818920 1654 TATDNNGASA-TDTITVTI 1671
Antig_Caf1: domain 1 of 1, from 1753 to 1769: score 0.4, E = 6.7
CS --SEEEEEEEEEEEE--
*->LAAGKYtDAvtvtvsnq<-*
L AG + D tvt s
gi|7818920 1753 LNAGTWSDTFTVTASDG 1769
SCPU: domain 2 of 2, from 1755 to 1765: score 5.8, E = 0.71
*->AGtYqDTlsVt<-*
AGt +DT++Vt
gi|7818920 1755 AGTWSDTFTVT 1765
Big_2: domain 3 of 3, from 1761 to 1777: score 0.9, E = 14
CS EEEEEETT.TEEEEEEE
*->tItatsgdgnksasvtv<-*
t t+t+ dg+ s s+tv
gi|7818920 1761 TFTVTASDGTISESATV 1777
Cadherin: domain 3 of 3, from 1761 to 1782: score 2.3, E = 6
CS --EEE----.........S---EEEE--EEE-
*->eLtveAtDadpllasgggpplsstatvtitVl<-*
++tv A+D+ s atv+it+
gi|7818920 1761 TFTVTASDG----------TISESATVVITIH 1782
Cadherin_pro: domain 1 of 2, from 1761 to 1781: score 2.6, E = 4.7
CS EEEEEEEETTTTEEEEEEEEE--
*->sFlVhAwDsetreqWeaevkvtl<-*
+F+V+A+D + e a+v +t
gi|7818920 1761 TFTVTASDGTISES--ATVVITI 1781
He_PIG: domain 4 of 6, from 1761 to 1771: score 1.7, E = 11
*->tftvtatdgsg<-*
tftvta+dg
gi|7818920 1761 TFTVTASDGTI 1771
PKD: domain 4 of 5, from 1763 to 1781: score 4.4, E = 0.8
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t+t+s+g s sat + +t+
gi|7818920 1763 TVTASDGTISESAT-VVITI 1781
DUF1679: domain 1 of 1, from 1828 to 1837: score -0.2, E = 10
*->DvikvHesnl<-*
D+i+++++n+
gi|7818920 1828 DIIATYKNNI 1837
Cadherin_pro: domain 2 of 2, from 1896 to 1914: score 0.3, E = 20
CS EEEEEEETTTTEEEEEEEEE--
*->FlVhAwDsetreqWeaevkvtl<-*
F+++A+Ds+ a+ vt
gi|7818920 1896 FTITARDSHNAF---ATDDVTI 1914
He_PIG: domain 5 of 6, from 1896 to 1905: score 0.1, E = 31
*->ftvtatdgsg<-*
ft+ta d+++
gi|7818920 1896 FTITARDSHN 1905
Flagellin_IN: domain 2 of 3, from 1911 to 1934: score 1.5, E = 14
*->tltinggggkensvadgvdislsagdslaal<-*
++ti+++g++ + +++++g++ + +
gi|7818920 1911 DVTITITGTNDD-------VDITGGTTSGSV 1934
DUF291: domain 2 of 2, from 1993 to 2002: score 1.2, E = 18
*->saGaTadpvLtv<-*
++G d+++tv
gi|7818920 1993 DNGE--DWTFTV 2002
He_PIG: domain 6 of 6, from 2020 to 2030: score 2.3, E = 7
*->tftvtatdgsg<-*
t+t+t++dg+g
gi|7818920 2020 TYTITISDGHG 2030
BiPBP_C: domain 3 of 3, from 2021 to 2039: score 7.7, E = 0.13
*->htLtVvDadGrsdrv.Vrf<-*
+t+t+ D++G sd+ +V++
gi|7818920 2021 YTITISDGHGSSDTQdVTI 2039
Flagellin_IN: domain 3 of 3, from 2022 to 2051: score 6.9, E = 0.44
*->tltinggggkensvadgvdislsagdslaala<-*
t+ti+ g g+++ ++v+i++ + d+ a +a
gi|7818920 2022 TITISDGHGSSD--TQDVTITIHGSDDNASVA 2051
PKD: domain 5 of 5, from 2022 to 2041: score 2.8, E = 2.5
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t t s+g gs++++++t+t+
gi|7818920 2022 TITISDGHGSSDTQDVTITI 2041
DUF91: domain 1 of 1, from 2081 to 2103: score 1.7, E = 4
*->eeeGLeFrkLePPkdtkRDlkrnvksktldlF<-*
e+ G+eFr +e k++ ++ tld+
gi|7818920 2081 EDSGIEFRNIE---------KHDNGTYTLDIY 2103
Spindle_Spc25: domain 1 of 1, from 2084 to 2118: score 2.6, E = 6.5
*->GLkIegvkg.dslkfvFtcidtgdpkreysftldl<-*
G+++++++++d+++++ + ++t d ++ sf ++l
gi|7818920 2084 GIEFRNIEKhDNGTYTLDIYKTADTDEADSFLIKL 2118
RIB43A: domain 1 of 1, from 2097 to 2111: score -0.3, E = 2.9
*->mYKldiCtkqDlkEA<-*
+Y ldi D++EA
gi|7818920 2097 TYTLDIYKTADTDEA 2111
TraY: domain 1 of 1, from 2256 to 2270: score 3.9, E = 2.1
*->PDFYNeeifrEkaee<-*
PD YN ++++E++ e
gi|7818920 2256 PDDYNFDAIKEVTTE 2270
efhand: domain 1 of 1, from 2309 to 2337: score 8.1, E = 0.46
CS HHHHHHHHHTTTSSSEEHHHHHHHHHHHH
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+ + +D+++DG++++++ +++lk+
gi|7818920 2309 LIPYMYMAADVNKDGEVTIQDALNILKMS 2337
Dockerin_1: domain 1 of 1, from 2318 to 2333: score 12.0, E = 0.014
CS -TT-SS--SHHHHHHH
*->DvNgDGkVnalDlall<-*
DvN+DG V+ D++ +
gi|7818920 2318 DVNKDGEVTIQDALNI 2333
DUF2089: domain 1 of 1, from 2321 to 2335: score 1.5, E = 3.4
*->ekGEISVEEAlklLk<-*
+ GE + ++Al++Lk
gi|7818920 2321 KDGEVTIQDALNILK 2335
Methyltransf_6: domain 1 of 1, from 2390 to 2399: score 0.5, E = 8.9
CS EEEETTEEEE
*->ivaDndGivV<-*
i +D++Gi++
gi|7818920 2390 ISGDETGIIL 2399
//