hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 78776447.fa
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Query sequence: gi|78776447|ref|YP_392762.1|
Accession: [none]
Description: hypothetical protein Suden_0246 [Sulfurimonas denitrificans DSM 1251]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 11.8 0.015 1
Pox_E6 Pox virus E6 protein 1.5 0.44 1
Porin_3 Eukaryotic porin 2.2 1.7 1
NHL NHL repeat 5.9 2.1 2
HtaA Htaa 0.6 6.2 1
SBBP Beta-propeller repeat 3.0 6.4 1
RAMP4 Ribosome associated membrane protein 1.7 9.1 1
DUF2327 Uncharacterized protein conserved in 1.2 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_E6 1/1 60 68 .. 563 571 .] 1.5 0.44
RAMP4 1/1 116 128 .. 52 64 .] 1.7 9.1
Porin_3 1/1 128 139 .. 301 312 .] 2.2 1.7
HtaA 1/1 200 212 .. 1 13 [. 0.6 6.2
He_PIG 1/1 208 223 .. 1 30 [. 11.8 0.015
NHL 1/2 236 252 .. 1 17 [. 5.9 2.1
DUF2327 1/1 378 388 .. 37 47 .] 1.2 9.4
SBBP 1/1 385 404 .. 9 28 .. 3.0 6.4
NHL 2/2 390 404 .. 2 17 .. 0.0 86
Alignments of top-scoring domains:
Pox_E6: domain 1 of 1, from 60 to 68: score 1.5, E = 0.44
*->LqiIkhGRs<-*
L +I+hGRs
gi|7877644 60 LHLITHGRS 68
RAMP4: domain 1 of 1, from 116 to 128: score 1.7, E = 9.1
*->GSaiFqiirsikm<-*
GSa ++++r i+
gi|7877644 116 GSAFVEMLRDITG 128
Porin_3: domain 1 of 1, from 128 to 139: score 2.2, E = 1.7
*->hkkndkgghKfG<-*
++k+ +++hK+G
gi|7877644 128 GLKIAASTHKVG 139
HtaA: domain 1 of 1, from 200 to 212: score 0.6, E = 6.2
*->vtisdGsLdWGVk<-*
++ d++++W+Vk
gi|7877644 200 AATDDNTVTWSVK 212
He_PIG: domain 1 of 1, from 208 to 223: score 11.8, E = 0.015
*->tytlTkpsdgslasysttpggggLPsGLtL<-*
t+++ +gg++LPs+L+L
gi|7877644 208 TWSV--------------KGGTALPSWLSL 223
NHL: domain 1 of 2, from 236 to 252: score 5.9, E = 2.1
CS BSSEEEEEE-TTTS-EE
*->lnrPhGvavdpsdGrvy<-*
++ P+G a+++ +G++y
gi|7877644 236 FSDPRGMAYNEVTGDIY 252
DUF2327: domain 1 of 1, from 378 to 388: score 1.2, E = 9.4
*->PHvflDlGden<-*
P v+lDlG +n
gi|7877644 378 PMVYLDLGLQN 388
SBBP: domain 1 of 1, from 385 to 404: score 3.0, E = 6.4
*->gpgasifgngIavDsnGNiY<-*
g +++ +++gIa+D GN+Y
gi|7877644 385 GLQNKSQPYGIAFDAAGNLY 404
NHL: domain 2 of 2, from 390 to 404: score 0.0, E = 86
CS SSEEEEEE-TTTS-EE
*->nrPhGvavdpsdGrvy<-*
++P G+a d G++y
gi|7877644 390 SQPYGIAFD-AAGNLY 404
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