hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 83312374.fa
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Query sequence: gi|83312374|ref|YP_422638.1|
Accession: [none]
Description: RTX toxins and related Ca2+-binding protein [Magnetospirillum magneticum AMB-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 346.8 4e-101 11
Cadherin Cadherin domain 66.7 2.1e-18 4
DAG1 Dystroglycan (Dystrophin-associated g 27.8 7.5e-08 6
PKD PKD domain 21.6 4.2e-06 7
DUF1869 Domain of unknown function (DUF1869) 6.7 0.0064 2
Glyco_hydro_19 Chitinase class I 7.0 0.072 2
CbiD CbiD 7.1 0.11 1
Adeno_shaft Adenoviral fibre protein (repeat/shaf 8.8 0.29 2
PPC Bacterial pre-peptidase C-terminal do 6.4 0.4 1
Phage_GP20 Phage minor structural protein GP20 5.4 0.44 2
Pyocin_S S-type Pyocin 4.6 0.56 1
Sarcoglycan_2 Sarcoglycan alpha/epsilon 2.6 0.89 1
I-set Immunoglobulin I-set domain 4.8 1.2 2
DUF1965 Domain of unknown function (DUF1965) 3.8 1.4 3
NPCBM_assoc NPCBM-associated, NEW3 domain of alph 4.1 2 2
V-set Immunoglobulin V-set domain 3.2 2.4 1
PsbI Photosystem II reaction centre I prot 3.5 3.1 1
Glyco_hydro_11 Glycosyl hydrolases family 11 2.1 3.3 1
FtsK_SpoIIIE FtsK/SpoIIIE family 2.4 3.4 1
DUF823 Salmonella repeat of unknown function 1.0 3.5 1
CBM_25 Carbohydrate binding domain (family 2 2.6 3.7 1
gerPA Spore germination protein gerPA/gerPF 2.5 3.8 2
PolyG_pol Sigma NS protein 0.3 3.8 1
AA_kinase Amino acid kinase family 1.7 4.2 1
Lenti_VIF_2 Bovine Lentivirus VIF protein -0.4 4.3 1
DASH_Dad4 DASH complex subunit Dad4 1.8 4.6 1
PhageMaj_Tail Phage major tail protein, TP901-1 2.5 4.8 1
Flu_B_M2 Influenza B matrix protein 2 (BM2) 1.3 5.2 1
Fil_haemagg Haemagluttinin repeat 2.6 5.2 2
DUF1664 Protein of unknown function (DUF1664) 0.9 5.6 1
Misat_Myo_SegII Misato Segment II myosin-like domain 1.7 5.7 1
Endotoxin_mid Bacillus thuringiensis delta-Endotoxi 0.4 6 1
Proteasom_PSMB Proteasome non-ATPase 26S subunit -0.8 6.2 1
Fimbrial_CS1 CS1 type fimbrial major subunit 0.2 6.5 1
AHS2 Allophanate hydrolase subunit 2 0.2 6.7 1
Hat1_N Histone acetyl transferase HAT1 N-ter 0.6 6.8 1
Virus_HS Virion host shutoff protein -2.0 6.8 1
Peptidase_C47 Staphopain peptidase C47 0.4 6.8 1
SUR7 SUR7 protein 1.0 7 1
Lactococcin_972 Bacteriocin (Lactococcin_972) 1.6 7.5 1
Antig_Caf1 Caf1 Capsule antigen 0.3 7.5 1
PEN-2 Presenilin enhancer-2 subunit of gamm 0.4 7.6 1
GBS_Bsp-like GBS Bsp-like repeat 1.4 7.7 1
BiPBP_C Penicillin-Binding Protein C-terminus 1.5 7.8 1
HIM Haemagglutinin 3.1 8 1
DUF1302 Protein of unknown function (DUF1302) -0.7 8.3 1
DUF1615 Protein of unknown function (DUF1615) 0.1 8.4 1
MgpC MgpC protein precursor 0.2 8.4 1
PhnH Bacterial phosphonate metabolism prot 0.6 9.3 1
FAD_binding_7 FAD binding domain of DNA photolyase 0.2 9.6 1
PD40 WD40-like Beta Propeller Repeat 1.5 9.7 1
DUF1321 Protein of unknown function (DUF1321) -0.1 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Virus_HS 1/1 38 55 .. 424 442 .. -2.0 6.8
DUF1321 1/1 44 77 .. 136 161 .] -0.1 10
PsbI 1/1 59 70 .. 25 36 .] 3.5 3.1
Flu_B_M2 1/1 118 144 .. 83 109 .] 1.3 5.2
Proteasom_PSMB 1/1 144 161 .. 1 18 [. -0.8 6.2
DUF1615 1/1 156 179 .. 225 249 .. 0.1 8.4
Endotoxin_mid 1/1 225 234 .. 1 10 [. 0.4 6
Peptidase_C47 1/1 255 270 .. 161 176 .] 0.4 6.8
MgpC 1/1 336 363 .. 1 24 [. 0.2 8.4
Hat1_N 1/1 346 353 .. 180 187 .] 0.6 6.8
I-set 1/2 378 397 .. 1 19 [. 3.6 2.6
V-set 1/1 378 397 .. 1 34 [. 3.2 2.4
Glyco_hydro_11 1/1 434 443 .. 185 194 .] 2.1 3.3
Misat_Myo_SegII 1/1 441 451 .. 8 18 .. 1.7 5.7
PKD 1/7 465 480 .. 76 92 .] 1.8 5.2
gerPA 1/2 472 489 .. 58 75 .] 1.6 7.4
HIM 1/1 484 504 .. 1 24 [] 3.1 8
GBS_Bsp-like 1/1 512 525 .. 83 97 .] 1.4 7.7
SUR7 1/1 605 632 .. 1 28 [. 1.0 7
Cadherin 1/4 620 706 .. 1 107 [] 30.6 4.7e-08
Adeno_shaft 1/2 661 678 .. 13 30 .] 4.4 4.8
Glyco_hydro_19 1/2 666 677 .. 222 233 .] 3.4 0.82
DUF1869 1/2 697 709 .. 1 14 [. 4.6 0.05
Cadherin 2/4 718 804 .. 1 107 [] 33.3 7.7e-09
Adeno_shaft 2/2 759 776 .. 13 30 .] 4.4 4.8
Glyco_hydro_19 2/2 764 775 .. 222 233 .] 3.6 0.71
Fil_haemagg 1/2 778 875 .. 1 75 [] 0.8 17
Antig_Caf1 1/1 795 806 .. 125 136 .] 0.3 7.5
PolyG_pol 1/1 817 842 .. 337 363 .. 0.3 3.8
DUF1302 1/1 860 871 .. 671 682 .] -0.7 8.3
PEN-2 1/1 888 902 .. 85 101 .] 0.4 7.6
PKD 2/7 896 914 .. 73 92 .] 0.7 11
CBM_25 1/1 898 907 .. 78 87 .] 2.6 3.7
He_PIG 1/11 951 997 .. 1 61 [] 44.9 5.9e-12
PPC 1/1 971 1058 .. 1 85 [] 6.4 0.4
Lactococcin_972 1/1 972 987 .. 38 53 .. 1.6 7.5
Phage_GP20 1/2 974 983 .. 153 162 .] 2.7 2.5
PKD 3/7 988 1008 .. 72 92 .] 2.0 4.5
He_PIG 2/11 998 1013 .. 39 61 .] 0.5 24
DUF1869 2/2 999 1012 .. 1 14 [. 2.1 0.55
DUF1664 1/1 1028 1039 .. 1 12 [. 0.9 5.6
PKD 4/7 1042 1107 .. 26 92 .] 10.5 0.011
PD40 1/1 1045 1066 .. 16 41 .] 1.5 9.7
PhageMaj_Tail 1/1 1048 1064 .. 124 140 .] 2.5 4.8
Sarcoglycan_2 1/1 1048 1066 .. 62 80 .. 2.6 0.89
He_PIG 3/11 1051 1097 .. 1 61 [] 48.4 5.7e-13
Phage_GP20 2/2 1074 1083 .. 153 162 .] 2.7 2.5
AA_kinase 1/1 1094 1120 .. 285 313 .] 1.7 4.2
Pyocin_S 1/1 1130 1152 .. 66 88 .. 4.6 0.56
DAG1 1/6 1135 1176 .. 46 90 .. 0.9 1.6
PhnH 1/1 1144 1167 .. 64 88 .. 0.6 9.3
DUF1965 1/3 1147 1162 .. 62 77 .] 1.3 8.3
He_PIG 4/11 1150 1196 .. 1 61 [] 32.1 2.6e-08
BiPBP_C 1/1 1188 1203 .. 78 94 .] 1.5 7.8
DAG1 2/6 1234 1294 .. 44 106 .. 0.1 2.6
He_PIG 5/11 1251 1299 .. 1 61 [] 38.2 4.8e-10
NPCBM_assoc 1/2 1279 1297 .. 62 86 .] 3.1 3.8
I-set 2/2 1297 1310 .. 83 96 .] 1.2 13
DASH_Dad4 1/1 1303 1318 .. 78 93 .] 1.8 4.6
DAG1 3/6 1337 1410 .. 46 128 .. 6.8 0.04
DUF823 1/1 1342 1351 .. 1 10 [. 1.0 3.5
He_PIG 6/11 1352 1398 .. 1 61 [] 33.9 7.9e-09
DUF1965 2/3 1353 1364 .. 66 77 .] 0.8 11
CbiD 1/1 1392 1423 .. 1 34 [. 7.1 0.11
gerPA 2/2 1410 1421 .. 64 75 .] 0.9 11
DAG1 4/6 1432 1479 .. 42 92 .. 10.7 0.0035
DUF1965 3/3 1446 1463 .. 60 77 .] 1.7 6.4
He_PIG 7/11 1451 1497 .. 1 61 [] 33.4 1e-08
Fimbrial_CS1 1/1 1455 1464 .. 18 27 .. 0.2 6.5
He_PIG 8/11 1552 1600 .. 1 61 [] 25.8 1.5e-06
PKD 5/7 1573 1611 .. 38 92 .] 1.0 8.8
NPCBM_assoc 2/2 1580 1598 .. 62 86 .] 1.0 16
Fil_haemagg 2/2 1582 1616 .. 1 37 [. 1.8 8.8
Cadherin 3/4 1587 1612 .. 73 105 .. 1.0 14
DAG1 5/6 1649 1681 .. 56 92 .. 2.3 0.67
He_PIG 9/11 1653 1699 .. 1 61 [] 35.2 3.4e-09
DAG1 6/6 1733 1796 .. 490 558 .. 7.0 0.036
PKD 6/7 1739 1806 .. 40 92 .] 1.1 8.7
He_PIG 10/11 1749 1796 .. 1 61 [] 45.1 5e-12
Lenti_VIF_2 1/1 1757 1777 .. 176 198 .] -0.4 4.3
Cadherin 4/4 1774 1790 .. 91 107 .] 1.8 8.5
He_PIG 11/11 1936 1980 .. 16 61 .] 9.4 0.071
AHS2 1/1 1940 1955 .. 60 76 .. 0.2 6.7
PKD 7/7 1967 1991 .. 68 92 .] 4.4 0.79
FtsK_SpoIIIE 1/1 1975 1991 .. 250 284 .] 2.4 3.4
FAD_binding_7 1/1 2052 2064 .. 1 13 [. 0.2 9.6
Alignments of top-scoring domains:
Virus_HS: domain 1 of 1, from 38 to 55: score -2.0, E = 6.8
*->DApeALdlLPapGkTraev<-*
DAp+AL+ +ap +T+ +v
gi|8331237 38 DAPDALAKVAAP-DTPTPV 55
DUF1321: domain 1 of 1, from 44 to 77: score -0.1, E = 10
*->epdeaapapaplaaak........gaeVVsLDaF<-*
++ +a+ +p+p++++ +++++++ eVV++D+
gi|8331237 44 AKVAAPDTPTPVEVKSadpsrnngRKEVVFVDTS 77
PsbI: domain 1 of 1, from 59 to 70: score 3.5, E = 3.1
*->snDpgRnPgrke<-*
s Dp+Rn grke
gi|8331237 59 SADPSRNNGRKE 70
Flu_B_M2: domain 1 of 1, from 118 to 144: score 1.3, E = 5.2
*->DHiviEGLsaeEiiKmGetvLEvEeLq<-*
D i i G a+ + K+G t L + Lq
gi|8331237 118 DSIAILGHGADGVQKIGLTSLSLATLQ 144
Proteasom_PSMB: domain 1 of 1, from 144 to 161: score -0.8, E = 6.2
*->mdndleklLkelsaeeqp<-*
d+++ ++L+e+ a+ +p
gi|8331237 144 QDAQAREKLAEIGASLTP 161
DUF1615: domain 1 of 1, from 156 to 179: score 0.1, E = 8.4
*->GkkLaLDGDLlrYgsggqpraepSs<-*
G L++DGD+l+Yg + + ++ +++
gi|8331237 156 GASLTPDGDILLYGCD-VAKGDDGK 179
Endotoxin_mid: domain 1 of 1, from 225 to 234: score 0.4, E = 6
CS EE------EE
*->LlvssGAnLY<-*
Llvs AnLY
gi|8331237 225 LLVSYDANLY 234
Peptidase_C47: domain 1 of 1, from 255 to 270: score 0.4, E = 6.8
CS -TTS-EEEEEEEEE--
*->vSngdhYqWdssiyGY<-*
+S g ++W+ + G+
gi|8331237 255 LSVGNNFNWYTTYVGF 270
MgpC: domain 1 of 1, from 336 to 363: score 0.2, E = 8.4
*->MGssavP......SlWYWVVersaeenaSg<-*
G ++vP+ +++ S+WY V r + n+ +
gi|8331237 336 -GQNFVPtysgtlSMWYIEV-RDTQSNTAN 363
Hat1_N: domain 1 of 1, from 346 to 353: score 0.6, E = 6.8
CS HHHHHHST
*->iFvllFIE<-*
++++++IE
gi|8331237 346 TLSMWYIE 353
I-set: domain 1 of 2, from 378 to 397: score 3.6, E = 2.6
CS -EEEE-- EEEEEETTCEEE
*->PkFtqkp.kdveVqeGesar<-*
P+F+ +++v+V +G sa+
gi|8331237 378 PSFVGGSsQSVTVAVGASAT 397
V-set: domain 1 of 1, from 378 to 397: score 3.2, E = 2.4
CS XEEEEEECSS.............EEEEETTSEEE
*->qsvvtqepprWGLLLTASLsWptsvtvaeGgsvt<-*
+s+v + ++ svtva+G+s+t
gi|8331237 378 PSFVGG-SSQ-------------SVTVAVGASAT 397
Glyco_hydro_11: domain 1 of 1, from 434 to 443: score 2.1, E = 3.3
CS SEEEEEEEEE
*->qSSGsAnvtv<-*
+SSGsAn+t
gi|8331237 434 GSSGSANITP 443
Misat_Myo_SegII: domain 1 of 1, from 441 to 451: score 1.7, E = 5.7
*->ltadGqeTYTP<-*
+t+ G++TYTP
gi|8331237 441 ITPAGTVTYTP 451
PKD: domain 1 of 7, from 465 to 480: score 1.8, E = 5.2
CS EEETTCEEEEEEEEEEE
*->vsngvgsasattttvtV<-*
vs+g +a++t ++tV
gi|8331237 465 VSDGTATATKT-FNITV 480
gerPA: domain 1 of 2, from 472 to 489: score 1.6, E = 7.4
*->aTntfDsDviDQpvigNa<-*
aT+tf+ v+D p+i a
gi|8331237 472 ATKTFNITVNDAPSITGA 489
HIM: domain 1 of 1, from 484 to 504: score 3.1, E = 8
CS EEEEEE--S...-EETT-TT--CC
*->qqItNVasGeitvtktDAvnvsQL<-*
+It+ +G t++D ++vs++
gi|8331237 484 PSITGASAG---QTVNDNATVSPF 504
GBS_Bsp-like: domain 1 of 1, from 512 to 525: score 1.4, E = 7.7
*->dGkrvGvnlttGtqv<-*
+G+ +G++++t ++v
gi|8331237 512 NGTSDGTTAQT-QTV 525
SUR7: domain 1 of 1, from 605 to 632: score 1.0, E = 7
*->lffliLdgasdsiplndfywleadtagi<-*
+ + ++++ ++i+l+ + +e++tag+
gi|8331237 605 VISTSINDTPTNISLSASSVAENSTAGT 632
Cadherin: domain 1 of 4, from 620 to 706: score 30.6, E = 4.7e-08
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
sv En+ Gt v+t+ tDaD + +Ys++gg ++F
gi|8331237 620 SASSVAENSTAGTAVGTLSSTDAD----SGDSFTYSLVGGA-TDKFQ 661
CS B-TTSSEEE..E---S---S.....S-B--EEE----.........S---
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
I + ++ ++LD+E+ +++tv+ tDa ++ +
gi|8331237 662 ISGSQLQ----VKSGANLDYETA--TSHSVTVRTTDA---------QGAF 696
CS EEEE--EEE-
statvtitVl<-*
+ t+tV+
gi|8331237 697 YEKAFTVTVT 706
Adeno_shaft: domain 1 of 2, from 661 to 678: score 4.4, E = 4.8
CS EE-TS-EEE-B-TTEEEE
*->tvtnnaLalklGagLtvd<-*
++++++L++k Ga L+ +
gi|8331237 661 QISGSQLQVKSGANLDYE 678
Glyco_hydro_19: domain 1 of 2, from 666 to 677: score 3.4, E = 0.82
CS HHT----S----
*->iLgVspGdNLdC<-*
+L+V G NLd+
gi|8331237 666 QLQVKSGANLDY 677
DUF1869: domain 1 of 2, from 697 to 709: score 4.6, E = 0.05
*->nnkatyllTVTNNs<-*
ka +++TVTN +
gi|8331237 697 YEKA-FTVTVTNVN 709
Cadherin: domain 2 of 4, from 718 to 804: score 33.3, E = 7.7e-09
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
a+vpEn+ Gt v+++t tD+D ++Ys++gg +F
gi|8331237 718 SAATVPENSGAGTVVGNLTTTDPD----SGNTLTYSLVGGA-TSKFQ 759
CS B-TTSSEEE..E---S---S.....S-B--EEE----.........S---
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
I + ++ ++LD+E+ +++tv+ tD++ +l+
gi|8331237 760 ISGSQLQ----VKAGANLDYETA--TSHSVTVRSTDQG---------GLT 794
CS EEEE--EEE-
statvtitVl<-*
titV
gi|8331237 795 YDKAFTITVS 804
Adeno_shaft: domain 2 of 2, from 759 to 776: score 4.4, E = 4.8
CS EE-TS-EEE-B-TTEEEE
*->tvtnnaLalklGagLtvd<-*
++++++L++k Ga L+ +
gi|8331237 759 QISGSQLQVKAGANLDYE 776
Glyco_hydro_19: domain 2 of 2, from 764 to 775: score 3.6, E = 0.71
CS HHT----S----
*->iLgVspGdNLdC<-*
+L+V G NLd+
gi|8331237 764 QLQVKAGANLDY 775
Fil_haemagg: domain 1 of 2, from 778 to 875: score 0.8, E = 17
CS EEESSEEEETT TT--EE-SEEEEEE-ST
*->vaaGaltlnaa...................alggldlnnggtlsagg
++++++t++ +++++ + ++ + + ++ ++ + + n g+t+ ++
gi|8331237 778 ATSHSVTVRSTdqggltydkaftitvsnvnDPPTVSINEGATVTQSQ 824
CS T-EEEE-S-EEESSE.................. .EEEEESS-EEE
gltltaagllnnggtliaggdlllaagalrngg.....dltltaaGdLdn
+t++a++l + +g +a+g l+ + g++ ++g+ +++++l+a+ +++
gi|8331237 825 SVTINATRLVAYDG-EQAAGSLTYTVGTAPAAGtlyrnNVALSAGSTFTQ 873
CS EE
sg<-*
+
gi|8331237 874 TD 875
Antig_Caf1: domain 1 of 1, from 795 to 806: score 0.3, E = 7.5
CS EEEEEEEEEE--
*->YtDAvtvtvsnq<-*
Y A t+tvsn
gi|8331237 795 YDKAFTITVSNV 806
PolyG_pol: domain 1 of 1, from 817 to 842: score 0.3, E = 3.8
*->dsvdtiSlsRiklrnGnWviadGeDak<-*
++++t S s + + + ++v+ dGe+a+
gi|8331237 817 GATVTQSQS-VTINATRLVAYDGEQAA 842
DUF1302: domain 1 of 1, from 860 to 871: score -0.7, E = 8.3
*->RDFvSlsvkysF<-*
R++v+ls++ +F
gi|8331237 860 RNNVALSAGSTF 871
PEN-2: domain 1 of 1, from 888 to 902: score 0.4, E = 7.6
*->WgatgDllsFiiPDkLG<-*
+g+t D+ +F+++ G
gi|8331237 888 GGGTSDNFTFTVA--DG 902
PKD: domain 2 of 7, from 896 to 914: score 0.7, E = 11
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t tv +gv+ ++a tt+ +
gi|8331237 896 TFTVADGVSGSTAL-TTFAI 914
CBM_25: domain 1 of 1, from 898 to 907: score 2.6, E = 3.7
*->TvadGvvgrg<-*
TvadGv+g++
gi|8331237 898 TVADGVSGST 907
He_PIG: domain 1 of 11, from 951 to 997: score 44.9, E = 5.9e-12
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
+y++ + +g +LPs+L+L+sst +++G P+ +v
gi|8331237 951 SYSA------------KLQSGATLPSWLSLNSSTRTFSGNPPAGV-- 983
Gsytftvtatdgsg<-*
s ++vta+dg+g
gi|8331237 984 SSLAIRVTASDGKG 997
PPC: domain 1 of 1, from 971 to 1058: score 6.4, E = 0.4
CS -EEEEEEEESTTCE EEEEE ECTSSS...S...CCEEEE
*->dvdvysFtvpaggt.lsisl........dggsslrslsgnGdadtlL
++++s + pag ++l+i+++ +++++++g++ d++ L
gi|8331237 971 STRTFSGNPPAGVSsLAIRVtasdgkggTGTA---------DFT--L 1006
CS EEECCCS ESSSSTTCE-.....ECCTTEEEEEECC .-SEE
ywlldgd..pslsaydaystTrdvdnggsdelisfta........peaGt
+ +++++++++++++++++t ++g+ + ++a + + +++ +a t
gi|8331237 1007 T-ITNANdtATVANAIPDQT----WTGSGAKSYQVPAatfsvdpdGDALT 1051
CS EEEEEEE
YyirVyg<-*
Y +++ g
gi|8331237 1052 YSATLQG 1058
Lactococcin_972: domain 1 of 1, from 972 to 987: score 1.6, E = 7.5
*->gksfkgyArAGvwskA<-*
+++f+g +AGv s+A
gi|8331237 972 TRTFSGNPPAGVSSLA 987
Phage_GP20: domain 1 of 2, from 974 to 983: score 2.7, E = 2.5
*->lpgGNPkagg<-*
+++GNP ag+
gi|8331237 974 TFSGNPPAGV 983
PKD: domain 3 of 7, from 988 to 1008: score 2.0, E = 4.5
CS EEEEEEETTCEEEEEEEEEEE
*->VtLtvsngvgsasattttvtV<-*
+++t+s+g+g + + + t+t+
gi|8331237 988 IRVTASDGKGGTGTADFTLTI 1008
He_PIG: domain 2 of 11, from 998 to 1013: score 0.5, E = 24
*->GtPtptvqpGsytftvtatdgsg<-*
Gt G+ +ft+t+t++
gi|8331237 998 GT-------GTADFTLTITNAND 1013
DUF1869: domain 2 of 2, from 999 to 1012: score 2.1, E = 0.55
*->nnkatyllTVTNNs<-*
+ a ++lT+TN +
gi|8331237 999 TGTADFTLTITNAN 1012
DUF1664: domain 1 of 1, from 1028 to 1039: score 0.9, E = 5.6
*->GSGgrkYgliii<-*
GSG ++Y ++++
gi|8331237 1028 GSGAKSYQVPAA 1039
PKD: domain 4 of 7, from 1042 to 1107: score 10.5, E = 0.011
CS .B.TT.SSECEEEEE-SS.SSSEEEECSSEEEEEESS. ... SEEE
*->SydpdpGspvsysWdFGDggspgttstepnvtHtYskg.sVt.pGtY
S dpd G++++ys + +gg +++++ +++ t+s g+ +++G +
gi|8331237 1042 SVDPD-GDALTYSATLQGGGALPSWLSFDTASRTFS-GnPPAgVGPF 1086
CS EEEEEEEETTCEEEEEEEEEEE
tVtLtvsngvgsasattttvtV<-*
++t+t+++g+g +++ t+v
gi|8331237 1087 NITVTANDGNGGTVSD-TFVLT 1107
PD40: domain 1 of 1, from 1045 to 1066: score 1.5, E = 9.7
*->PDGktivFssnrgdgddgsGsfdiyv<-*
PDG+ +++s++ + g G+ +
gi|8331237 1045 PDGDALTYSATLQ----GGGALPSWL 1066
PhageMaj_Tail: domain 1 of 1, from 1048 to 1064: score 2.5, E = 4.8
*->gEatyelsLeSaGaLtf<-*
++ ty+ +L++ GaL
gi|8331237 1048 DALTYSATLQGGGALPS 1064
Sarcoglycan_2: domain 1 of 1, from 1048 to 1066: score 2.6, E = 0.89
*->dqvtyeasLkgyPDLPsWL<-*
d +ty a+L+g +LPsWL
gi|8331237 1048 DALTYSATLQGGGALPSWL 1066
He_PIG: domain 3 of 11, from 1051 to 1097: score 48.4, E = 5.7e-13
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty++ t+ ggg+LPs+L++d ++ +++G P+ +v
gi|8331237 1051 TYSA------------TLQGGGALPSWLSFDTASRTFSGNPPAGV-- 1083
Gsytftvtatdgsg<-*
G +++tvta dg g
gi|8331237 1084 GPFNITVTANDGNG 1097
Phage_GP20: domain 2 of 2, from 1074 to 1083: score 2.7, E = 2.5
*->lpgGNPkagg<-*
+++GNP ag+
gi|8331237 1074 TFSGNPPAGV 1083
AA_kinase: domain 1 of 1, from 1094 to 1120: score 1.7, E = 4.2
CS SSTTHHHHHHHHHHHHHHCTTTSEEEEEE
*->fgtGgmvpkvrAailavrsgvgipviItn<-*
+g Gg+v++ ++la+ + + pv +t
gi|8331237 1094 DGNGGTVSDTFVLTLATAN--DAPVLVTP 1120
Pyocin_S: domain 1 of 1, from 1130 to 1152: score 4.6, E = 0.56
*->GrYevTlpakTiqdvpgptitWT<-*
G++++T+p+ T d++ t+tW+
gi|8331237 1130 GVWSYTVPSGTFSDADNDTLTWS 1152
DAG1: domain 1 of 6, from 1135 to 1176: score 0.9, E = 1.6
CS XXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXX
*->hvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqG<-
+vp ++ ++++ ++ s++ dg L p+wL ++a L G
gi|8331237 1135 TVPSGTFSDADN-DTLTWSATKADGSAL--PAWLSFNAGTLVLSG 1176
CS
*
gi|8331237 - -
PhnH: domain 1 of 1, from 1144 to 1167: score 0.6, E = 9.3
*->cDsDTPvWLdpalnlsavsrawLrF<-*
+D+DT W ++ ++ sa+ +awL F
gi|8331237 1144 ADNDTLTWSATKADGSAL-PAWLSF 1167
DUF1965: domain 1 of 3, from 1147 to 1162: score 1.3, E = 8.3
CS T--GGG--S--TTS--
*->dnGdWavtdqnGdvpp<-*
d + W++t G+++p
gi|8331237 1147 DTLTWSATKADGSALP 1162
He_PIG: domain 4 of 11, from 1150 to 1196: score 32.1, E = 2.6e-08
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
t+++ t+ +g++LP++L++++ t+ ++G +p+ p
gi|8331237 1150 TWSA------------TKADGSALPAWLSFNAGTLVLSGN-APNNLP 1183
Gsytftvtatdgsg<-*
++ ++++dg g
gi|8331237 1184 -QVDVKISVSDGNG 1196
BiPBP_C: domain 1 of 1, from 1188 to 1203: score 1.5, E = 7.8
*->tLtVvDadGrsdrvVrf<-*
+++V D++G s++ +f
gi|8331237 1188 KISVSDGNGGSASS-TF 1203
DAG1: domain 2 of 6, from 1234 to 1294: score 0.1, E = 2.6
CS XXXXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXX
*->rlhvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqG
+++vp +++ +++ ++ +s++ g L pswL ++ + G
gi|8331237 1234 TFQVPSNVFTDADG-DTLSLSATLTGGGAL--PSWLSFNPQTWAFTG 1277
CS X XXXXXXXXXXXXXXX
L.PLdtDKGVhyIsVSr<-*
+P D + I+VS+
gi|8331237 1278 NpPASADGQTYAITVSA 1294
He_PIG: domain 5 of 11, from 1251 to 1299: score 38.2, E = 4.8e-10
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
+ ++ t++ggg+LPs+L+++++t ++tG P+ + +
gi|8331237 1251 SLSA------------TLTGGGALPSWLSFNPQTWAFTGNPPAS-AD 1284
G.sytftvtatdgsg<-*
G++y +tv+a d +g
gi|8331237 1285 GqTYAITVSANDNEG 1299
NPCBM_assoc: domain 1 of 2, from 1279 to 1297: score 3.1, E = 3.8
*->pPadAaAGdPYHPYtltasAsYtvs<-*
pPa+A++ + Y++t+sA ++
gi|8331237 1279 PPASADGQT----YAITVSAN--DN 1297
I-set: domain 2 of 2, from 1297 to 1310: score 1.2, E = 13
CS ETTEEEEEEEEEEE
*->NsaGeaeasaeLtV<-*
N++G+ ++ ++Lt+
gi|8331237 1297 NEGGSISTAFNLTI 1310
DASH_Dad4: domain 1 of 1, from 1303 to 1318: score 1.8, E = 4.6
*->svdFnLeatgakkePl<-*
s++FnL +a + P+
gi|8331237 1303 STAFNLTIASANDTPF 1318
DAG1: domain 3 of 6, from 1337 to 1410: score 6.8, E = 0.04
CS XXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXXXX
*->hvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqGLP
+vp++++ +++ i s++ dg L pswL ++a rt G P
gi|8331237 1337 QVPVNTFTDADG-DAITWSATQGDGSAL--PSWLSFNASTRTFSGNP 1380
CS XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX
LdtDKGVhyIsVSrlrlrlngsdvpqt..sdvfsvEvh<-*
VS+l l+ g+d + + s++f+ v+
gi|8331237 1381 PSS--------VSSLVLKVTGTDPSAAavSSTFTLRVS 1410
DUF823: domain 1 of 1, from 1342 to 1351: score 1.0, E = 3.5
*->GvTgAdGtat<-*
+T+AdG a+
gi|8331237 1342 TFTDADGDAI 1351
He_PIG: domain 6 of 11, from 1352 to 1398: score 33.9, E = 7.9e-09
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
t+++ t +g++LPs+L++++st +++G P+++v
gi|8331237 1352 TWSA------------TQGDGSALPSWLSFNASTRTFSGNPPSSV-- 1384
Gsytftvtatdgsg<-*
s vt td+s
gi|8331237 1385 SSLVLKVTGTDPSA 1398
DUF1965: domain 2 of 3, from 1353 to 1364: score 0.8, E = 11
CS GG--S--TTS--
*->WavtdqnGdvpp<-*
W++t+ G+++p
gi|8331237 1353 WSATQGDGSALP 1364
CbiD: domain 1 of 1, from 1392 to 1423: score 7.1, E = 0.11
CS G---SSHHHHHHTTSEEEETTEEEE-EE-HHH.H
*->TGaCAtAaaKvaAlltLltgevldevtIetpsPG<-*
TG++ +Aaa v++ tL+ ++v d + +p+ G
gi|8331237 1392 TGTDPSAAA-VSSTFTLRVSDVNDVPVLANPV-G 1423
gerPA: domain 2 of 2, from 1410 to 1421: score 0.9, E = 11
*->sDviDQpvigNa<-*
sDv+D pv +N
gi|8331237 1410 SDVNDVPVLANP 1421
DAG1: domain 4 of 6, from 1432 to 1479: score 10.7, E = 0.0035
CS XXXXXXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXX
*->aFrlhvptellassedqGiikiseadKdgheLkapswLhwdadsrtL
a ++vp +++ +++ ++ s++ dg L pswL +da+ rt
gi|8331237 1432 AWSFQVPSNTFTDADS-DTLTWSATQTDGSSL--PSWLSFDANTRTF 1475
CS XXXX
qGLP<-*
G P
gi|8331237 1476 SGNP 1479
DUF1965: domain 3 of 3, from 1446 to 1463: score 1.7, E = 6.4
CS -TT--GGG--S--TTS--
*->dvdnGdWavtdqnGdvpp<-*
d d + W++t+ G+ +p
gi|8331237 1446 DSDTLTWSATQTDGSSLP 1463
He_PIG: domain 7 of 11, from 1451 to 1497: score 33.4, E = 1e-08
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
t+++ t ++g++LPs+L++d+ t +++G P+ + +p
gi|8331237 1451 TWSA------------TQTDGSSLPSWLSFDANTRTFSGNPPWG-AP 1484
Gsytftvtatdgsg<-*
+ + v ++dg g
gi|8331237 1485 -NLSLKVAVSDGNG 1497
Fimbrial_CS1: domain 1 of 1, from 1455 to 1464: score 0.2, E = 6.5
*->LQaDGSALPs<-*
+Q+DGS+LPs
gi|8331237 1455 TQTDGSSLPS 1464
He_PIG: domain 8 of 11, from 1552 to 1600: score 25.8, E = 1.5e-06
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
+ ++ t+++g +LPs++t++ st +++G P+ + +
gi|8331237 1552 SASA------------TLSSGAALPSWMTFNTSTWTFSGNPPAS-AN 1585
G.sytftvtatdgsg<-*
G++y vtatd
gi|8331237 1586 GqTYALKVTATDNQQ 1600
PKD: domain 5 of 7, from 1573 to 1611: score 1.0, E = 8.8
CS EEE-SS.SSSEEEECSSEEEEEESS....SEEEEEEEEEEET TCEE
*->sWdFGDggspgttstepnvtHtYskgsVtpGtYtVtLtvsng.vgsa
+W+F + n+ + + tY +++t+++++ gs
gi|8331237 1573 TWTFSG-----------NPPASANG-----QTYALKVTATDNqQGSI 1603
CS EEEEEEEEE
sattttvtV<-*
s+t ++tV
gi|8331237 1604 SST-FNLTV 1611
NPCBM_assoc: domain 2 of 2, from 1580 to 1598: score 1.0, E = 16
*->pPadAaAGdPYHPYtltasAsYtvs<-*
pPa+A + + Y+l+++A+ ++
gi|8331237 1580 PPASANGQT----YALKVTAT--DN 1598
Fil_haemagg: domain 2 of 2, from 1582 to 1616: score 1.8, E = 8.8
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-
*->vaaGaltlnaaalggldlnnggtlsagggltltaagl<-*
++a+ +t++ + + ++n++g++s++ +lt+t+a++
gi|8331237 1582 ASANGQTYALK--VTATDNQQGSISSTFNLTVTNAND 1616
Cadherin: domain 3 of 4, from 1587 to 1612: score 1.0, E = 14
CS S-B--EEE----.........S---EEEE--EE
*->geYeLtveAtDadpllasgggpplsstatvtit<-*
++Y L v AtD+ + + sst +t+t
gi|8331237 1587 QTYALKVTATDN-------QQGSISSTFNLTVT 1612
DAG1: domain 5 of 6, from 1649 to 1681: score 2.3, E = 0.67
CS XX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXXXX
*->edqGiikiseadKdgheLkapswLhwdadsrtLqGLP<-*
+d ++ s++ dg L pswL ++a srt G P
gi|8331237 1649 GD--TLTYSATKADGTAL--PSWLSFNASSRTFSGNP 1681
He_PIG: domain 9 of 11, from 1653 to 1699: score 35.2, E = 3.4e-09
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty++ t+ +g++LPs+L++++s+ +++G P+++ +
gi|8331237 1653 TYSA------------TKADGTALPSWLSFNASSRTFSGNPPSSLSY 1687
Gsytftvtatdgsg<-*
+ +ta+dg g
gi|8331237 1688 --IDLKITASDGNG 1699
DAG1: domain 6 of 6, from 1733 to 1796: score 7.0, E = 0.036
CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
*->vKvPsDTFYDkeDgTTdkLkLTLktrdklevgeksWvqfnSksqllY
+K+Ps TF D + d L+ T k + sW++f+ + q +
gi|8331237 1733 YKIPSGTFSDPDS---DPLTYTAK--GPNNTPLPSWLKFDPTTQTFS 1774
CS XXXXXXXXXXXXXXXXXXXXXX
GlPdsehiGkhEYflkAtDkGG<-*
G P ++ G+ AtD+ G
gi|8331237 1775 GTPPQGTNGSLAVTVTATDSSG 1796
PKD: domain 6 of 7, from 1739 to 1806: score 1.1, E = 8.7
CS E-SS.SSSEEEECSSEEEEEESS. ...SEEE
*->dFGDggspgttstepnvtHtYskg................sVtpGtY
+F D +s ++t t ++++ t + + + ++++++ +++++ +t G+
gi|8331237 1739 TFSDPDSDPLTYTAKGPNNTPLPSwlkfdpttqtfsgtppQGTNGSL 1785
CS EEEEEEEETTCEEEEEEEEEEE
tVtLtvsngvgsasattttvtV<-*
Vt+t++++ g+a+++ +
gi|8331237 1786 AVTVTATDSSGAAVSS-VINLS 1806
He_PIG: domain 10 of 11, from 1749 to 1796: score 45.1, E = 5e-12
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
tyt+ p +++LPs+L +d++t +++GtP++++
gi|8331237 1749 TYTA------------KGPNNTPLPSWLKFDPTTQTFSGTPPQGTN- 1782
Gsytftvtatdgsg<-*
Gs +tvtatd+sg
gi|8331237 1783 GSLAVTVTATDSSG 1796
Lenti_VIF_2: domain 1 of 1, from 1757 to 1777: score -0.4, E = 4.3
*->tsPL..WlnFssGKEPTIQQLSGHP<-*
++PL++Wl F PT Q SG P
gi|8331237 1757 NTPLpsWLKF----DPTTQTFSGTP 1777
Cadherin: domain 4 of 4, from 1774 to 1790: score 1.8, E = 8.5
CS ...S---EEEE--EEE-
*->gggpplsstatvtitVl<-*
+g+pp+ + +++ +tV+
gi|8331237 1774 SGTPPQGTNGSLAVTVT 1790
He_PIG: domain 11 of 11, from 1936 to 1980: score 9.4, E = 0.071
*->sttpggggLPsGLtLdsstGritGtPtptvqp....Gsytftvtatd
+ +++g +LP ++++d++ G + G +p++ +Gs + v a d
gi|8331237 1936 AKMSDGRPLPPWMSFDATRGVFVGE-----APegfkGSLAVVVVARD 1977
gsg<-*
+g
gi|8331237 1978 NGG 1980
AHS2: domain 1 of 1, from 1940 to 1955: score 0.2, E = 6.7
*->dGqrpvppwrsvavkaG<-*
dG+ p+ppw s+ + +G
gi|8331237 1940 DGR-PLPPWMSFDATRG 1955
PKD: domain 7 of 7, from 1967 to 1991: score 4.4, E = 0.79
CS EEEEEEEEEEETTCEEEEEEEEEEE
*->GtYtVtLtvsngvgsasattttvtV<-*
G+ V +++ ++ g+ +att ++ V
gi|8331237 1967 GSLAVVVVARDNGGHEVATTFRIQV 1991
FtsK_SpoIIIE: domain 1 of 1, from 1975 to 1991: score 2.4, E = 3.4
*->aRlnlDdaaGiHlllAtpeldaqpdVvavrqRpsv<-*
aR ++G H + +t +R++v
gi|8331237 1975 AR-----DNGGHEVATT-------------FRIQV 1991
FAD_binding_7: domain 1 of 1, from 2052 to 2064: score 0.2, E = 9.6
CS -SHHHHHHHHHHH
*->gGEeaAlkrLeaF<-*
+G++aA++rL ++
gi|8331237 2052 AGRHAAMARLARW 2064
//