hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 83312376.fa
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Query sequence: gi|83312376|ref|YP_422640.1|
Accession: [none]
Description: RTX toxins and related Ca2+-binding protein [Magnetospirillum magneticum AMB-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 26.2 1.2e-06 2
DAG1 Dystroglycan (Dystrophin-associated g 12.0 0.0015 1
DUF1321 Protein of unknown function (DUF1321) 6.6 0.056 1
ChW Clostridial hydrophobic W 8.6 0.13 2
Peptidase_M6 Immune inhibitor A peptidase M6 2.3 0.56 1
PPC Bacterial pre-peptidase C-terminal do 5.3 0.83 2
BiPBP_C Penicillin-Binding Protein C-terminus 4.4 1.2 1
Secretin_N_2 Secretin N-terminal domain 3.2 2 1
GSPII_G Bacterial type II secretion system pr 2.8 2.7 1
Lamprin Lamprin 1.5 3.1 1
RTC_insert RNA 3'-terminal phosphate cyclase (RT 2.4 3.4 1
Asp_Glu_race Asp/Glu/Hydantoin racemase 2.3 3.7 1
AAT Acyl-coenzyme A:6-aminopenicillanic a 1.6 4.1 1
Peptidase_M16 Insulinase (Peptidase family M16) 2.4 4.2 1
FMN_bind FMN-binding domain 2.4 4.4 1
3HBOH 3HB-oligomer hydrolase (3HBOH) -0.1 4.9 1
PsiA PsiA protein 0.8 5 1
Cadherin_pro Cadherin prodomain like 2.4 5.3 1
LIP Secretory lipase 0.2 5.6 1
Methyltransf_12 Methyltransferase domain 2.6 5.9 1
DUF1196 Protein of unknown function (DUF1196) 2.5 6.4 1
Y_Y_Y Y_Y_Y domain 2.0 7 1
PAP1 Transcription factor PAP1 -0.3 7.6 1
Peptidase_M7 Streptomyces extracellular neutral pr 0.7 7.6 1
Methyltransf_2 O-methyltransferase 0.1 7.8 1
DUF11 Domain of unknown function DUF11 2.4 8.9 2
DUF2239 Uncharacterized protein conserved in -0.2 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1321 1/1 2 52 .. 111 161 .] 6.6 0.056
Asp_Glu_race 1/1 57 87 .. 224 254 .] 2.3 3.7
LIP 1/1 115 137 .. 1 26 [. 0.2 5.6
Methyltransf_12 1/1 116 140 .. 85 109 .] 2.6 5.9
Peptidase_M7 1/1 187 213 .. 1 27 [. 0.7 7.6
3HBOH 1/1 189 199 .. 711 721 .] -0.1 4.9
DUF2239 1/1 196 205 .. 184 193 .] -0.2 9.1
ChW 1/2 258 268 .. 10 20 .. 4.0 3.1
RTC_insert 1/1 262 276 .. 100 114 .] 2.4 3.4
ChW 2/2 453 464 .. 8 19 .. 4.6 2.1
Peptidase_M6 1/1 500 531 .. 86 117 .. 2.3 0.56
AAT 1/1 526 546 .. 248 268 .] 1.6 4.1
GSPII_G 1/1 604 619 .. 98 114 .] 2.8 2.7
PPC 1/2 649 704 .. 6 76 .. 3.2 3.3
DUF11 1/2 703 720 .. 29 46 .. 1.2 19
He_PIG 1/2 715 740 .. 39 61 .] 1.3 14
Y_Y_Y 1/1 730 752 .. 44 69 .] 2.0 7
Methyltransf_2 1/1 735 753 .. 1 20 [. 0.1 7.8
PPC 2/2 743 813 .. 1 76 [. 2.1 6.8
PAP1 1/1 771 822 .. 133 184 .. -0.3 7.6
Secretin_N_2 1/1 800 813 .. 94 107 .] 3.2 2
DUF11 2/2 812 829 .. 29 46 .. 1.2 19
FMN_bind 1/1 833 854 .. 1 26 [. 2.4 4.4
Lamprin 1/1 950 962 .. 126 138 .] 1.5 3.1
DAG1 1/1 1017 1069 .. 44 98 .. 12.0 0.0015
DUF1196 1/1 1018 1026 .. 1 9 [. 2.5 6.4
PsiA 1/1 1026 1040 .. 1 15 [. 0.8 5
He_PIG 2/2 1035 1082 .. 1 61 [] 24.9 2.7e-06
BiPBP_C 1/1 1074 1091 .. 78 94 .] 4.4 1.2
Peptidase_M16 1/1 1074 1092 .. 1 20 [. 2.4 4.2
Cadherin_pro 1/1 1075 1091 .. 75 94 .] 2.4 5.3
Alignments of top-scoring domains:
DUF1321: domain 1 of 1, from 2 to 52: score 6.6, E = 0.056
*->Feqaeeddeeeeeeipekiedededepdeaapapaplaaak......
F+ a++ d++ +++ d ++ + + +pap+ ++aa+++++++
gi|8331237 2 FDGAAAMDAAHAPP------DSAAKALIPDSPAPVQVRAADqsqdgg 42
gaeVVsLDaF<-*
+ +VV++D+
gi|8331237 43 KKQVVFVDTS 52
Asp_Glu_race: domain 1 of 1, from 57 to 87: score 2.3, E = 3.7
CS HHHHHHC.S-SSEE .E-HHHHHHHCCCCCHH
*->peiekalGdlgvpv.eIDsgaataeravrlll<-*
+ +e+a+Gd g+ ++eI++++ +++++++
gi|8331237 57 KTLEAAVGD-GIEIqEISGVQSGLAQIAKWAE 87
LIP: domain 1 of 1, from 115 to 137: score 0.2, E = 5.6
*->lqfgsplsTvlTQaemllivplLdqG<-*
+s+ls+ +TQae++ i +L+ G
gi|8331237 115 ---ASNLSGAVTQAELAQIGHALKAG 137
Methyltransf_12: domain 1 of 1, from 116 to 140: score 2.6, E = 5.9
*->hhldpedprevLrnlrrlLkPGGvl<-*
+ l+ + +++ L+++ ++Lk GG l
gi|8331237 116 SNLSGAVTQAELAQIGHALKAGGDL 140
Peptidase_M7: domain 1 of 1, from 187 to 213: score 0.7, E = 7.6
CS -EEEEEEEEE-GGGHHHHHHHHHHHHH
*->avtvtYdasnAPsFrsqiarsaqiWns<-*
+ t+t +a P ++ +a +++iW s
gi|8331237 187 TGTITSSAIDVPDYAAALAVTTNIWVS 213
3HBOH: domain 1 of 1, from 189 to 199: score -0.1, E = 4.9
*->tvaaGaVqVPd<-*
t+++ a++VPd
gi|8331237 189 TITSSAIDVPD 199
DUF2239: domain 1 of 1, from 196 to 205: score -0.2, E = 9.1
*->DVRdHAlaLA<-*
DV d+A aLA
gi|8331237 196 DVPDYAAALA 205
ChW: domain 1 of 2, from 258 to 268: score 4.0, E = 3.1
*->wVkDGaisGtv<-*
wV+DG+++Gt+
gi|8331237 258 WVTDGTEAGTQ 268
RTC_insert: domain 1 of 1, from 262 to 276: score 2.4, E = 3.4
*->GeeAAkeLLeelesG<-*
G eA ++L +++++G
gi|8331237 262 GTEAGTQLVKDIRPG 276
ChW: domain 2 of 2, from 453 to 464: score 4.6, E = 2.1
*->qnwVkDGaisGt<-*
++wV+DG+++Gt
gi|8331237 453 EPWVSDGTTAGT 464
Peptidase_M6: domain 1 of 1, from 500 to 531: score 2.3, E = 0.56
*->KqYYEeQSGGSYsvdGtVtgWykvpgnAAyYG<-*
K Y QSG Ys+dGt++g kv g + YG
gi|8331237 500 KVYFTTQSGDLYSTDGTAAGTAKVNGISSVYG 531
AAT: domain 1 of 1, from 526 to 546: score 1.6, E = 4.1
*->rtalydpadrkatlclgnprn<-*
++++y + +at++lg+++
gi|8331237 526 ISSVYGFESSTATMYLGGNDG 546
GSPII_G: domain 1 of 1, from 604 to 619: score 2.8, E = 2.7
CS TS--...EEE--.TT-E
*->DGqpGGeGtdaDpIgnW<-*
DG GG++ D I+++
gi|8331237 604 DGTSGGTALVKD-INSG 619
PPC: domain 1 of 2, from 649 to 704: score 3.2, E = 3.3
CS EEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSESSSSTT
*->sFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdpslsayd
sF+ + ++ls++ +g ++ d++++L ++d+d s ++ +
gi|8331237 649 SFVTGTAQSLSVAFNGAAV--------DLKSYLH-VSDSD-SSQTET 685
CS CE-.....ECCTTEEEEEECC.-S
aystTrdvdnggsdelisftapea<-*
+++ + ++s+ ++sf+ ++a
gi|8331237 686 WSQ-----SVAPSHGTLSFSSATA 704
DUF11: domain 1 of 2, from 703 to 720: score 1.2, E = 19
*->tktvsnatarpGdtvtYT<-*
t t++ + ++pG t+tYT
gi|8331237 703 TATSGSTDVTPGGTITYT 720
He_PIG: domain 1 of 2, from 715 to 740: score 1.3, E = 14
*->GtPtptvqp....Gsytftvtatdgsg<-*
Gt+t+t ++++ +Gs tftv+++dg g
gi|8331237 715 GTITYT-PTtgysGSDTFTVQVSDGNG 740
Y_Y_Y: domain 1 of 1, from 730 to 752: score 2.0, E = 7
*->tikvkakdkdgnwsyddiasltftvl<-*
t++v++ d +g ++ + +++tv+
gi|8331237 730 TFTVQVSDGNGGTAT---RVFNVTVA 752
Methyltransf_2: domain 1 of 1, from 735 to 753: score 0.1, E = 7.8
CS CCCEC.TS-EEEEEEETTGG
*->trggeeDGeeervYgltpas<-*
+g ++G+++rv+ t+as
gi|8331237 735 VSDG-NGGTATRVFNVTVAS 753
PPC: domain 2 of 2, from 743 to 813: score 2.1, E = 6.8
CS -EEEEEEEESTTCE EEEEEECTSSS...S... CCEEEEEEECCCS
*->dvdvysFtvpaggt.lsisldggsslrslsgnG.dadtlLywlldgd
++v+ +tv+++ ++ ++ ++ +++ s+++ d+++ L ++d+d
gi|8331237 743 ATRVFNVTVASNVSpTFVTATAKTLSVSYNSAAiDLKPELH-ISDSD 788
CS ESSSSTTCE-.....ECCTTEEEEEECC.-S
pslsaydaystTrdvdnggsdelisftapea<-*
s ++ ++++ + ++s+ ++sf+ ++a
gi|8331237 789 -SSQTETWSQ-----SVAPSHGSLSFSSATA 813
PAP1: domain 1 of 1, from 771 to 822: score -0.3, E = 7.6
CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
*->eassrstaspnglqssatqyasndnsssdsPSsgsdgftnqllsslg
+ s++ + +p++ s + +++ + s+s++PS gs++f +++++s +
gi|8331237 771 YNSAAIDLKPELHISDSDSSQTETWSQSVAPSHGSLSFSSATATSGS 817
CS XXXXX
tspeP<-*
t++ P
gi|8331237 818 TDVTP 822
Secretin_N_2: domain 1 of 1, from 800 to 813: score 3.2, E = 2
*->aPgdGryslStsta<-*
aP+ G++s S +ta
gi|8331237 800 APSHGSLSFSSATA 813
DUF11: domain 2 of 2, from 812 to 829: score 1.2, E = 19
*->tktvsnatarpGdtvtYT<-*
t t++ + ++pG t+tYT
gi|8331237 812 TATSGSTDVTPGGTITYT 829
FMN_bind: domain 1 of 1, from 833 to 854: score 2.4, E = 4.4
*->GywEkgpitvlvtvPdddGkItgvki<-*
Gy+ g+ t++v v + dG++t+ ++
gi|8331237 833 GYS--GTDTFTVQV-S-DGTVTATRV 854
Lamprin: domain 1 of 1, from 950 to 962: score 1.5, E = 3.1
*->KvAAPLAPvvAAi<-*
KvA PLAPvv A
gi|8331237 950 KVAVPLAPVVVAP 962
DAG1: domain 1 of 1, from 1017 to 1069: score 12.0, E = 0.0015
CS XXXXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXX
*->rlhvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqG
r+++p +++ s ++ +s+a g L pswL +d+ s+tL G
gi|8331237 1017 RVTIPLDAFVHSRSDAVVTLSAARVTGQPL--PSWLNFDSRSGTLAG 1061
CS XXXXXXXX
LPLdtDKG<-*
P + KG
gi|8331237 1062 QPPADFKG 1069
DUF1196: domain 1 of 1, from 1018 to 1026: score 2.5, E = 6.4
*->mtvPLEAFv<-*
+t+PL+AFv
gi|8331237 1018 VTIPLDAFV 1026
PsiA: domain 1 of 1, from 1026 to 1040: score 0.8, E = 5
*->MsarSrALvpLsaeq<-*
rS A v+Lsa++
gi|8331237 1026 VHSRSDAVVTLSAAR 1040
He_PIG: domain 2 of 2, from 1035 to 1082: score 24.9, E = 2.7e-06
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
t ++ +g +LPs+L++ds +G+++G P+
gi|8331237 1035 TLSA------------ARVTGQPLPSWLNFDSRSGTLAGQPPADFK- 1068
Gsytftvtatdgsg<-*
G+ +++ a d +g
gi|8331237 1069 GTMVVRIVARDDKG 1082
BiPBP_C: domain 1 of 1, from 1074 to 1091: score 4.4, E = 1.2
*->tLtVvDadGrsdrv.Vrf<-*
++++ D+ G+ ++++Vr+
gi|8331237 1074 RIVARDDKGQEATItVRI 1091
Peptidase_M16: domain 1 of 1, from 1074 to 1092: score 2.4, E = 4.2
CS EEEEEE-SSSSEEEEEEEES
*->rVasesdppadtsavglwid<-*
r++ ++d ++ ++++++i+
gi|8331237 1074 RIVARDD-KGQEATITVRIN 1092
Cadherin_pro: domain 1 of 1, from 1075 to 1091: score 2.4, E = 5.3
CS EEEEETTTTEEEEEEEEE--
*->VhAwDsetreqWeaevkvtl<-*
+ A+D +++e a++ v+
gi|8331237 1075 IVARDDKGQE---ATITVRI 1091
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