hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            85058757.fa
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Query sequence: gi|85058757|ref|YP_454459.1|
Accession:      [none]
Description:    hypothetical protein SG0779 [Sodalis glossinidius str. 'morsitans']

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Peptidase_C48   Ulp1 protease family, C-terminal cata     3.0          1   1
Herpes_LMP2     Gammaherpesvirus latent membrane prot     0.9        2.2   1
Nitrate_red_del Nitrate reductase delta subunit           2.0        3.6   1
FmrO            Ribosomal RNA methyltransferase (FmrO     1.2        5.8   1
MMTV_SAg        Mouse mammary tumour virus superantig    -1.2        7.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
MMTV_SAg          1/1      52    92 ..    50    92 ..    -1.2      7.9
Peptidase_C48     1/1      86   105 ..     1    20 [.     3.0        1
Herpes_LMP2       1/1     179   188 ..   494   503 .]     0.9      2.2
Nitrate_red_del   1/1     227   248 ..     1    22 [.     2.0      3.6
FmrO              1/1     229   239 ..     1    11 [.     1.2      5.8

Alignments of top-scoring domains:
MMTV_SAg: domain 1 of 1, from 52 to 92: score -1.2, E = 7.9
                   *->CKLGiALLCLGLLGEvAvRArRALtLDsFnsssvqDYnLnnsE<-*
                      C LGiAL   G +GE A  A+ ALt++s   +    Y Ln sE
  gi|8505875    52    CSLGIALAASG-IGEAAA-AKEALTVESAGFAPRPIYHLNASE    92

Peptidase_C48: domain 1 of 1, from 86 to 105: score 3.0, E = 1
                CS    ---BHHHHHHHHHH......
                   *->ewlndtvidfylkllaerle<-*
                      ++ln++ + +y+++  +r++
  gi|8505875    86    YHLNASEMGLYTNYANRRIL    105

Herpes_LMP2: domain 1 of 1, from 179 to 188: score 0.9, E = 2.2
                CS    XXXXXXXXXX
                   *->rpvtrYdNvv<-*
                      rpv+ YdNv
  gi|8505875   179    RPVAAYDNVL    188

Nitrate_red_del: domain 1 of 1, from 227 to 248: score 2.0, E = 3.6
                   *->vlqvaSlLLeYPDeeaalwlhk<-*
                      +lq+aS  + YPD   a ++++
  gi|8505875   227    MLQSASYQMVYPDGFDAMQQGT    248

FmrO: domain 1 of 1, from 229 to 239: score 1.2, E = 5.8
                   *->aSaKYRsvaPe<-*
                       Sa Y++v+P+
  gi|8505875   229    QSASYQMVYPD    239

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