hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            86740146.fa
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Query sequence: gi|86740146|ref|YP_480546.1|
Accession:      [none]
Description:    hypothetical protein Francci3_1440 [Frankia sp. CcI3]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
DUF1643         Protein of unknown function (DUF1643)     0.2          3   1
DUF1547         Domain of Unknown Function (DUF1547)      2.7          4   1
Prion_octapep   Copper binding octapeptide repeat         3.4          9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF1643           1/1     144   156 ..     1    14 [.     0.2        3
DUF1547           1/1     206   238 ..    31    63 .]     2.7        4
Prion_octapep     1/1     281   288 ..     1     8 []     3.4        9

Alignments of top-scoring domains:
DUF1643: domain 1 of 1, from 144 to 156: score 0.2, E = 3
                   *->RYlLkRtWdeskke<-*
                       ++L+R W+es ++
  gi|8674014   144    -WRLTRIWRESLPT    156

DUF1547: domain 1 of 1, from 206 to 238: score 2.7, E = 4
                   *->nLGdvIkdfengtgsggivapkdqgeGvpsssa<-*
                      +LG++I++ en  g +  +++ ++g G++ +++
  gi|8674014   206    QLGALIRADENWRGRPVRLLSCETGQGDNPVAQ    238

Prion_octapep: domain 1 of 1, from 281 to 288: score 3.4, E = 9
                   *->PHgGgWgq<-*
                      PH G+W +
  gi|8674014   281    PHDGSWIN    288

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