hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            87124150.fa
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Query sequence: gi|87124150|ref|ZP_01080000.1|
Accession:      [none]
Description:    VCBS protein [Synechococcus sp. RS9917]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Flagellin_C     Bacterial flagellin C-terminus            3.6        3.7   1
Gpi16           Gpi16 subunit, GPI transamidase compo    -0.6        7.3   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Gpi16             1/1      22    42 ..     8    28 ..    -0.6      7.3
Flagellin_C       1/1      47    62 ..     1    16 [.     3.6      3.7

Alignments of top-scoring domains:
Gpi16: domain 1 of 1, from 22 to 42: score -0.6, E = 7.3
                   *->vllsaiaiaegldEefdEeLv<-*
                      vll+a++++++++E + E+Lv
  gi|8712415    22    VLLVADGSCAKIRELLAEALV    42

Flagellin_C: domain 1 of 1, from 47 to 62: score 3.6, E = 3.7
                   *->akgaqaaldivDeAlt<-*
                      ++g+q++l+iv++Al+
  gi|8712415    47    LDGTQDPLQIVTAALA    62

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