hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 89075996.fa
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Query sequence: gi|89075996|ref|ZP_01162365.1|
Accession: [none]
Description: hypothetical protein SKA34_09303 [Photobacterium sp. SKA34]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cna_B Cna protein B-type domain 15.3 0.00036 1
TSP_3 Thrombospondin type 3 repeat 17.5 0.00048 6
CBM_4_9 Carbohydrate binding domain 7.2 0.14 1
UCR_TM Ubiquinol cytochrome reductase transm 6.4 0.36 1
PilS PilS N terminal 4.8 0.5 2
Dockerin_1 Dockerin type I repeat 6.9 0.53 3
Pox_A30L_A26L Orthopoxvirus A26L/A30L protein 3.5 0.59 1
MAP1B_neuraxin Neuraxin and MAP1B repeat 5.4 0.89 3
WD40 WD domain, G-beta repeat 4.5 1 2
SurA_N SurA N-terminal domain 3.7 1.1 1
CRAM_rpt Cysteine-rich, acidic integral membra 3.2 1.1 1
UPF0300 Uncharacterised protein family (UPF03 3.9 1.2 1
Excalibur Excalibur calcium-binding domain 4.2 1.2 1
P68HR P68HR (NUC004) repeat 5.6 1.3 1
Binary_toxB Clostridial binary toxin B/anthrax to 1.8 1.4 1
DUF302 Domain of unknown function DUF302 5.0 1.4 1
DNA_pol_B_2 DNA polymerase type B, organellar and 2.3 1.6 1
PC_rep Proteasome/cyclosome repeat 4.9 1.6 2
IFRD Interferon-related developmental regu 1.8 1.6 1
NLE NLE (NUC135) domain 4.6 1.7 1
DicB DicB protein 2.8 1.7 1
Feld-I_B Allergen Fel d I-B chain 4.4 1.9 1
DUF1727 Domain of unknown function (DUF1727) 1.0 2 1
Aminoglyc_resit Aminoglycoside-2''-adenylyltransferas 2.3 2.3 1
Sipho_tail Siphovirus tail component protein 0.3 2.5 1
Flagellin_C Bacterial flagellin C-terminus 4.1 2.6 1
PD40 WD40-like Beta Propeller Repeat 3.2 2.8 2
PPC Bacterial pre-peptidase C-terminal do 3.4 2.9 1
Apc15p Apc15p protein 1.9 3.3 1
DUF1683 Protein of unknown function (DUF1683) 2.6 3.3 1
BPL_LipA_LipB Biotin/lipoate A/B protein ligase fam 2.8 3.3 1
efhand EF hand 4.9 3.5 2
PKD PKD domain 2.4 3.5 1
tRNA-synt_1d tRNA synthetases class I (R) 0.9 3.5 1
Baculo_p24 Baculovirus P24 capsid protein 2.2 3.6 1
Nup133_N Nup133 N terminal like 0.2 3.6 1
RanGAP1_C RanGAP1 C-terminal domain 1.2 3.7 1
SKN1 Beta-glucan synthesis-associated prot -1.3 3.8 1
DUF1989 Domain of unknown function (DUF1989) 1.4 3.8 1
IgG_binding_B B domain 3.0 3.9 1
Radial_spoke Radial spokehead-like protein 0.2 4 1
Osmo_CC Osmosensory transporter coiled coil 2.6 4.5 1
Stap_Strp_toxin Staphylococcal/Streptococcal toxin, O 2.5 4.8 1
YMF19 Plant ATP synthase F0 2.5 4.8 1
DUF1174 Repeat of unknown function (DUF1174) 4.0 4.9 1
DUF328 Protein of unknown function (DUF328) 1.3 4.9 1
OstA_C Organic solvent tolerance protein 0.4 4.9 1
LRR_1 Leucine Rich Repeat 3.8 5 1
HXXSHH Protein of unknown function (DUF1552) 0.3 5.1 1
ClpB_D2-small C-terminal, D2-small domain, of ClpB 1.6 5.3 1
DeoC DeoC/LacD family aldolase 0.8 5.3 1
Adhesin_Dr Dr-family adhesin 2.8 5.3 1
Prenyltrans Prenyltransferase and squalene oxidas 3.3 5.5 1
zf-DNL DNL zinc finger 2.4 5.6 1
DUF1923 Domain of unknown function (DUF1923) 1.1 5.7 1
MNNL N terminus of Notch ligand 2.5 5.7 1
META META domain 2.8 6 1
Phage_sheath_1 Phage tail sheath protein -0.9 6.1 1
DUF244 Uncharacterized protein family (ORF7) 1.1 6.3 1
Staphylokinase Staphylokinase/Streptokinase family 2.0 6.3 1
Pterin_4a Pterin 4 alpha carbinolamine dehydrat 1.8 6.4 1
Aegerolysin Aegerolysin 1.6 6.4 1
A2M Alpha-2-macroglobulin family 1.1 6.6 1
ig Immunoglobulin domain 2.2 6.6 1
Reovirus_L2 Reovirus core-spike protein lambda-2 -1.8 6.8 1
Big_2 Bacterial Ig-like domain (group 2) 1.9 7 1
Arteri_Gl Arterivirus GL envelope glycoprotein 0.9 7.1 1
EspA EspA-like secreted protein 0.6 7.2 1
DNA_pol_viral_C DNA polymerase (viral) C-terminal dom -1.9 7.2 1
Methyltransf_6 Demethylmenaquinone methyltransferase 0.8 7.2 1
Lectin_legB Legume lectin domain 0.2 7.3 1
DUF297 TM1410 hypothetical-related protein 0.2 7.6 1
DUF2202 Uncharacterized protein conserved in 1.1 8 1
DUF1512 Protein of unknown function (DUF1512) -1.6 8.2 1
CheB_methylest CheB methylesterase 0.4 8.5 1
DUF1450 Protein of unknown function (DUF1450) 1.0 8.8 1
TcpF Vibrio cholerae toxin co-regulated pi -0.3 8.8 1
ELO GNS1/SUR4 family 0.2 8.9 1
CoA_trans Coenzyme A transferase 0.4 9 1
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 -1.5 9.2 1
Phage-Gp8 Bacteriophage T4, Gp8 -0.7 9.3 1
DUF1897 Domain of unknown function (DUF1897) 2.2 9.3 1
DUF211 Uncharacterized ArCR, COG1888 -0.2 9.3 1
DUF371 Domain of unknown function (DUF371) 1.2 9.6 1
Glyco_hydro_72 Glycolipid anchored surface protein ( -0.5 9.7 1
FAD_binding_3 FAD binding domain -0.8 9.8 1
Germane Sporulation and spore germination 1.5 9.8 1
DUF548 Protein of unknown function (DUF548) -0.2 9.8 1
Chorion_1 Chorion protein 0.5 9.9 1
RNA_lig_T4_1 T4 RNA ligase (RNA_lig_T4_1) 0.6 10 1
Phage_T7_tail Phage T7 tail fibre protein -0.1 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Feld-I_B 1/1 10 20 .. 57 67 .] 4.4 1.9
EspA 1/1 11 25 .. 264 278 .] 0.6 7.2
Chorion_1 1/1 74 93 .. 1 20 [. 0.5 9.9
LRR_1 1/1 106 126 .. 1 25 [] 3.8 5
Glyco_hydro_72 1/1 110 134 .. 336 361 .] -0.5 9.7
DNA_pol_B_2 1/1 172 195 .. 1 27 [. 2.3 1.6
DUF244 1/1 180 213 .. 1 36 [. 1.1 6.3
DeoC 1/1 190 218 .. 115 144 .. 0.8 5.3
PC_rep 1/2 195 221 .. 8 38 .] 1.7 14
Aminoglyc_resit 1/1 196 216 .. 154 174 .] 2.3 2.3
Excalibur 1/1 259 272 .. 26 38 .. 4.2 1.2
Binary_toxB 1/1 264 272 .. 1 9 [. 1.8 1.4
efhand 1/2 264 277 .. 8 21 .. 0.0 74
TSP_3 1/6 265 277 .. 1 15 [] 5.1 2.5
Adhesin_Dr 1/1 337 343 .. 140 146 .] 2.8 5.3
CBM_4_9 1/1 411 455 .. 122 172 .] 7.2 0.14
ELO 1/1 416 434 .. 1 20 [. 0.2 8.9
TSP_3 2/6 464 476 .. 1 15 [] 5.2 2.4
TSP_3 3/6 477 489 .. 1 15 [] 2.6 14
NLE 1/1 487 516 .. 1 32 [. 4.6 1.7
Dockerin_1 1/3 494 504 .. 1 11 [. 3.9 4.6
Staphylokinase 1/1 497 522 .. 1 26 [. 2.0 6.3
TSP_3 4/6 522 534 .. 1 15 [] 1.9 23
META 1/1 625 647 .. 85 105 .] 2.8 6
IFRD 1/1 726 745 .. 1 20 [. 1.8 1.6
PilS 1/2 781 803 .. 138 161 .] 0.4 9.6
CheB_methylest 1/1 903 911 .. 1 9 [. 0.4 8.5
Phage_T7_tail 1/1 908 920 .. 230 242 .] -0.1 10
WD40 1/2 939 987 .. 15 38 .] 3.6 2.2
Dockerin_1 2/3 988 993 .. 1 6 [. 0.1 68
A2M 1/1 1018 1030 .. 67 79 .. 1.1 6.6
SurA_N 1/1 1052 1060 .. 129 137 .] 3.7 1.1
CoA_trans 1/1 1146 1166 .. 224 244 .] 0.4 9
PD40 1/2 1161 1182 .. 1 19 [. 2.5 4.7
DUF1989 1/1 1222 1234 .. 1 13 [. 1.4 3.8
Reovirus_L2 1/1 1222 1234 .. 1310 1323 .] -1.8 6.8
DUF1897 1/1 1264 1275 .. 1 12 [. 2.2 9.3
YMF19 1/1 1317 1356 .. 51 101 .] 2.5 4.8
Arteri_Gl 1/1 1327 1346 .. 1 22 [. 0.9 7.1
efhand 2/2 1356 1376 .. 9 29 .] 4.9 3.5
Pterin_4a 1/1 1459 1473 .. 1 15 [. 1.8 6.4
DUF1727 1/1 1473 1479 .. 110 116 .] 1.0 2
FAD_binding_3 1/1 1479 1513 .. 78 115 .. -0.8 9.8
PKD 1/1 1614 1634 .. 71 92 .] 2.4 3.5
DUF371 1/1 1825 1845 .. 54 74 .. 1.2 9.6
Phage_sheath_1 1/1 1830 1841 .. 685 696 .] -0.9 6.1
BPL_LipA_LipB 1/1 1864 1873 .. 147 156 .] 2.8 3.3
PPC 1/1 2108 2168 .. 6 85 .] 3.4 2.9
ig 1/1 2166 2211 .. 19 67 .] 2.2 6.6
Phage-Gp8 1/1 2251 2312 .. 199 271 .. -0.7 9.3
OstA_C 1/1 2276 2299 .. 1 26 [. 0.4 4.9
Lectin_legB 1/1 2306 2349 .. 94 145 .. 0.2 7.3
DUF302 1/1 2309 2320 .. 55 66 .] 5.0 1.4
P68HR 1/1 2335 2364 .. 1 35 [] 5.6 1.3
UCR_TM 1/1 2364 2379 .. 1 18 [. 6.4 0.36
Prenyltrans 1/1 2423 2438 .. 30 45 .] 3.3 5.5
RanGAP1_C 1/1 2672 2688 .. 169 185 .] 1.2 3.7
DUF548 1/1 2685 2693 .. 230 238 .] -0.2 9.8
TSP_3 5/6 2696 2711 .. 1 15 [] 0.4 65
Dockerin_1 3/3 2697 2710 .. 1 14 [. 2.9 9.4
DUF1174 1/1 2781 2810 .. 1 26 [] 4.0 4.9
PilS 2/2 2786 2802 .. 138 161 .] 4.4 0.67
MAP1B_neuraxin 1/3 2818 2827 .. 1 10 [. 3.9 2.7
Cna_B 1/1 2879 2923 .. 1 43 [. 15.3 0.00036
Pox_A30L_A26L 1/1 2966 2985 .. 1 21 [. 3.5 0.59
Sipho_tail 1/1 3078 3089 .. 1 12 [. 0.3 2.5
WD40 2/2 3132 3155 .. 14 38 .] 1.0 18
SKN1 1/1 3158 3190 .. 1 38 [. -1.3 3.8
DUF1923 1/1 3225 3239 .. 24 38 .. 1.1 5.7
DUF297 1/1 3279 3296 .. 270 289 .] 0.2 7.6
RNA_pol_Rpb2_6 1/1 3287 3317 .. 127 161 .. -1.5 9.2
MAP1B_neuraxin 2/3 3323 3331 .. 1 9 [. 0.1 51
Big_2 1/1 3334 3362 .. 55 90 .] 1.9 7
RNA_lig_T4_1 1/1 3372 3381 .. 287 296 .] 0.6 10
tRNA-synt_1d 1/1 3457 3469 .. 363 375 .] 0.9 3.5
PD40 2/2 3500 3517 .. 17 41 .] 0.7 18
TcpF 1/1 3514 3538 .. 333 357 .] -0.3 8.8
IgG_binding_B 1/1 3622 3636 .. 42 56 .] 3.0 3.9
DUF211 1/1 3657 3673 .. 60 76 .. -0.2 9.3
DUF1450 1/1 3679 3687 .. 47 55 .. 1.0 8.8
TSP_3 6/6 3687 3699 .. 1 15 [] 2.4 16
HXXSHH 1/1 3747 3776 .. 311 338 .] 0.3 5.1
zf-DNL 1/1 3783 3807 .. 42 68 .] 2.4 5.6
Germane 1/1 3835 3862 .. 97 124 .] 1.5 9.8
UPF0300 1/1 3867 3882 .. 206 221 .] 3.9 1.2
MNNL 1/1 3921 3927 .. 1 7 [. 2.5 5.7
Apc15p 1/1 3946 3965 .. 1 21 [. 1.9 3.3
Flagellin_C 1/1 4015 4025 .. 62 72 .] 4.1 2.6
Osmo_CC 1/1 4039 4059 .. 1 21 [. 2.6 4.5
DUF1683 1/1 4059 4078 .. 64 85 .. 2.6 3.3
DUF328 1/1 4085 4098 .. 240 254 .] 1.3 4.9
DUF1512 1/1 4218 4225 .. 367 374 .] -1.6 8.2
Radial_spoke 1/1 4233 4268 .. 91 126 .. 0.2 4
Methyltransf_6 1/1 4254 4260 .. 179 185 .] 0.8 7.2
CRAM_rpt 1/1 4347 4361 .. 9 24 .] 3.2 1.1
Stap_Strp_toxin 1/1 4390 4396 .. 88 94 .] 2.5 4.8
MAP1B_neuraxin 3/3 4431 4440 .. 1 10 [. 1.4 18
DUF2202 1/1 4445 4460 .. 148 163 .] 1.1 8
Baculo_p24 1/1 4562 4585 .. 182 206 .] 2.2 3.6
Nup133_N 1/1 4568 4609 .. 359 408 .. 0.2 3.6
DicB 1/1 4589 4597 .. 42 50 .. 2.8 1.7
ClpB_D2-small 1/1 4629 4647 .. 75 95 .] 1.6 5.3
PC_rep 2/2 4661 4688 .. 7 38 .] 3.2 5.1
DNA_pol_viral_C 1/1 4715 4723 .. 92 100 .. -1.9 7.2
Aegerolysin 1/1 4746 4758 .] 125 140 .] 1.6 6.4
Alignments of top-scoring domains:
Feld-I_B: domain 1 of 1, from 10 to 20: score 4.4, E = 1.9
*->iMvtillSpeC<-*
iM+++l+S+ C
gi|8907599 10 IMLSSLFSKNC 20
EspA: domain 1 of 1, from 11 to 25: score 0.6, E = 7.2
*->llnslQsllaemnks<-*
+l+sl s++ e+++s
gi|8907599 11 MLSSLFSKNCEILSS 25
Chorion_1: domain 1 of 1, from 74 to 93: score 0.5, E = 9.9
*->mAkiilfVcAsALfvQSALS<-*
+ ++l+++A Lf+ S++S
gi|8907599 74 LTLTVLMIFAFSLFSKSVFS 93
LRR_1: domain 1 of 1, from 106 to 126: score 3.8, E = 5
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
Le + L + N +++ p+ +++l
gi|8907599 106 YLERVVLVD-N--KIS-ISPN-FeKL 126
Glyco_hydro_72: domain 1 of 1, from 110 to 134: score -0.5, E = 9.7
*->VsidgddvvsllaDFnnLKsqyakis<-*
V++ +++ + ++++F++L + +ki+
gi|8907599 110 VVLVDNKIS-ISPNFEKLGLKHEKID 134
DNA_pol_B_2: domain 1 of 1, from 172 to 195: score 2.3, E = 1.6
*->kintelkyrnfipyaHNllkFDgtfiL<-*
+in ky+n+i + +N l+ Dg+ L
gi|8907599 172 NIN---KYKNKIQRIGNKLGSDGVINL 195
DUF244: domain 1 of 1, from 180 to 213: score 1.1, E = 6.3
*->lEVsnlrnkIkknyaieLlishNiDndtlinlveel<-*
+ ++ nk+ ++ i+Ll ++n+ inl e +
gi|8907599 180 --IQRIGNKLGSDGVINLLACDSGNNEEGINLLEQF 213
DeoC: domain 1 of 1, from 190 to 218: score 0.8, E = 5.3
CS EEEEEHHHHHTT-.HHHHHHHHHHHHHHHH
*->dmvvnigadgseeveeqvleeIkavkeaCh<-*
d v+n+ a s++ +e+ ++ ++++++ ++
gi|8907599 190 DGVINLLACDSGN-NEEGINLLEQFSKLAN 218
PC_rep: domain 1 of 2, from 195 to 221: score 1.7, E = 14
*->lihaGsgnedealelLlvpyllsdtsnevra<-*
l+ + sgn++e+++lL+ ++ ++ ++v +
gi|8907599 195 LLACDSGNNEEGINLLE-QF---SKLANVTV 221
Aminoglyc_resit: domain 1 of 1, from 196 to 216: score 2.3, E = 2.3
*->LacdSLGeeavesLreqFkrr<-*
LacdS e ++L eqF +
gi|8907599 196 LACDSGNNEEGINLLEQFSKL 216
Excalibur: domain 1 of 1, from 259 to 272: score 4.2, E = 1.2
*->g.DphkLDrDgDGi<-*
++D+ LD D+DGi
gi|8907599 259 YsDVLDLDSDNDGI 272
Binary_toxB: domain 1 of 1, from 264 to 272: score 1.8, E = 1.4
*->dlDtDnDgI<-*
dlD+DnDgI
gi|8907599 264 DLDSDNDGI 272
efhand: domain 1 of 2, from 264 to 277: score 0.0, E = 74
CS HHTTTSSSEEHHHH
*->efDkDgDGkIsfeE<-*
++D D+DG ++++E
gi|8907599 264 DLDSDNDGILDIDE 277
TSP_3: domain 1 of 6, from 265 to 277: score 5.1, E = 2.5
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsDnDg+ D +
gi|8907599 265 LDSDNDGIL--DIDE 277
Adhesin_Dr: domain 1 of 1, from 337 to 343: score 2.8, E = 5.3
CS EEEEEES
*->dGGYWas<-*
dGG+W+s
gi|8907599 337 DGGTWVS 343
CBM_4_9: domain 1 of 1, from 411 to 455: score 7.2, E = 0.14
*->vltgeWtklegtFTipakgtastvvlyvelggtepdsttdfyvDdvs
+l + W++ ++tFT++ ++ +l+v+ + +t++ +D +s
gi|8907599 411 TLGTNWQQQSFTFTPT----VTGSYLIVFKNA--NTVNTALSIDGIS 451
ltdv<-*
+++
gi|8907599 452 ISGG 455
ELO: domain 1 of 1, from 416 to 434: score 0.2, E = 8.9
*->pllsspwpvltivllYLylv<-*
+ ++s+++++t + YL +v
gi|8907599 416 WQQQSFTFTPTVTGSYL-IV 434
TSP_3: domain 2 of 6, from 464 to 476: score 5.2, E = 2.4
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D+D+Dg D+ d
gi|8907599 464 QDTDSDGTP--DHLD 476
TSP_3: domain 3 of 6, from 477 to 489: score 2.6, E = 14
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+DsD+D Da +
gi|8907599 477 TDSDGDSCN--DAVE 489
NLE: domain 1 of 1, from 487 to 516: score 4.6, E = 1.7
*->qVqvrFvTkegdellavpdspfaiPvdltrae<-*
V++ F++++gd + v+++ ++ + ++t +
gi|8907599 487 AVEAGFTDENGDGE--VDGTGYDTDGKVTGSD 516
Dockerin_1: domain 1 of 3, from 494 to 504: score 3.9, E = 4.6
CS -TT-SS--SHH
*->DvNgDGkVnal<-*
D NgDG V+++
gi|8907599 494 DENGDGEVDGT 504
Staphylokinase: domain 1 of 1, from 497 to 522: score 2.0, E = 6.3
CS CSESCCCSSEEEEEEEEEEETTS-CC
*->npaesvnteykvsfnvkgvDldfnel<-*
++e+++t+y+ +++v+g+D+ ++++
gi|8907599 497 GDGEVDGTGYDTDGKVTGSDGYTTPA 522
TSP_3: domain 4 of 6, from 522 to 534: score 1.9, E = 23
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D+Dn g g D+ +
gi|8907599 522 ADTDNSGTG--DHLE 534
META: domain 1 of 1, from 625 to 647: score 2.8, E = 6
*->lsaLsavtsysvegg..tLtLtn<-*
+++L++++sys +gg+++L+L
gi|8907599 625 NNLLAQGASYSGSGGhdRLVLGY 647
IFRD: domain 1 of 1, from 726 to 745: score 1.8, E = 1.6
*->SDDDsSsdtaSilsgcesll<-*
SDD+++ aS+ ++++ +
gi|8907599 726 SDDEDAYQNASHSIPSDNFS 745
PilS: domain 1 of 2, from 781 to 803: score 0.4, E = 9.6
*->AtmItaCt.aDnGrtGtNTltfTsn<-*
A+ ++C+++++ +tG+++lt+
gi|8907599 781 AQ--AVCNdSNDNSTGSASLTWSGL 803
CheB_methylest: domain 1 of 1, from 903 to 911: score 0.4, E = 8.5
*->vVaIGASTG<-*
v++ G+STG
gi|8907599 903 VICLGTSTG 911
Phage_T7_tail: domain 1 of 1, from 908 to 920: score -0.1, E = 10
*->TatqielnAevSv<-*
T+t++e + S+
gi|8907599 908 TSTGSECGTHISA 920
WD40: domain 1 of 2, from 939 to 987: score 3.6, E = 2.2
CS EEEETT SSSEEEEEETTSEEEE
*->vafspd.........................sgpllasgSrDgtiki
v f+p++++ ++++++ ++ +++++ + s ++++++S+ g + +
gi|8907599 939 VQFNPNnadispssnnilftnhyandtdialSNEVVITASANGFVSL 985
CS EE
Wd<-*
W
gi|8907599 986 WI 987
Dockerin_1: domain 2 of 3, from 988 to 993: score 0.1, E = 68
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|8907599 988 DLNQDG 993
A2M: domain 1 of 1, from 1018 to 1030: score 1.1, E = 6.6
*->vdLnLPYSVvRGE<-*
++++LP SVv GE
gi|8907599 1018 LSFSLPSSVVHGE 1030
SurA_N: domain 1 of 1, from 1052 to 1060: score 3.7, E = 1.1
*->sdqEVdnfL<-*
sd+EV+++L
gi|8907599 1052 SDGEVEDYL 1060
CoA_trans: domain 1 of 1, from 1146 to 1166: score 0.4, E = 9
CS CSSCGGCEBCCGGHCCEEETT
*->geldpltvhtPGvlvdrvvea<-*
g++ l+ ++P ++ +++v
gi|8907599 1146 GNIAELNTLIPQMYYQDIVTT 1166
PD40: domain 1 of 2, from 1161 to 1182: score 2.5, E = 4.7
*->grltntsg...eggPtwSPDGk<-*
+++++t+g++ +g++wSP++k
gi|8907599 1161 QDIVTTPGqeiTWGFYWSPRRK 1182
DUF1989: domain 1 of 1, from 1222 to 1234: score 1.4, E = 3.8
*->detvpagsgwsfv<-*
++tvpag + ++v
gi|8907599 1222 SYTVPAGQYITRV 1234
Reovirus_L2: domain 1 of 1, from 1222 to 1234: score -1.8, E = 6.8
CS -EEE-SS-EEEEE-
*->TyiVPpGrYtlVvv<-*
+y+VP+G+Y ++v
gi|8907599 1222 SYTVPAGQY-ITRV 1234
DUF1897: domain 1 of 1, from 1264 to 1275: score 2.2, E = 9.3
*->aggaatGqaDYS<-*
+ ++ tG aDYS
gi|8907599 1264 GDAPDTGTADYS 1275
YMF19: domain 1 of 1, from 1317 to 1356: score 2.5, E = 4.8
*->lsslisevsklqkeqsllpvskdsllansslstsdlsvyNivsnsyl
+s +++ + l+ ++s+ ++s+++l+ n+ +s n yl
gi|8907599 1317 SSNDEDAIAGLGLYDSSASLSFSQLVHNT--TSS---------NAYL 1352
yssl<-*
y ++
gi|8907599 1353 YAWV 1356
Arteri_Gl: domain 1 of 1, from 1327 to 1346: score 0.9, E = 7.1
*->mgslddcvngnsstyqyiYtlT<-*
+g++d+ + ++s +q+++++T
gi|8907599 1327 LGLYDS--SASLSFSQLVHNTT 1346
efhand: domain 2 of 2, from 1356 to 1376: score 4.9, E = 3.5
CS HTTTSSSEEHHHHHHHHHHHH
*->fDkDgDGkIsfeEfkaalkkl<-*
+D D++Gk +++Ef+++ ++
gi|8907599 1356 VDWDKNGKFERDEFIEGGTES 1376
Pterin_4a: domain 1 of 1, from 1459 to 1473: score 1.8, E = 6.4
CS -S--B--HHHHHHHH
*->rakasaLsdeelsek<-*
+ ++aL+++e+se+
gi|8907599 1459 ASSSQALTGAEISEL 1473
DUF1727: domain 1 of 1, from 1473 to 1479: score 1.0, E = 2
*->LaTYTAM<-*
La+YT++
gi|8907599 1473 LANYTSF 1479
FAD_binding_3: domain 1 of 1, from 1479 to 1513: score -0.8, E = 9.8
CS ECCE....TTTTT---EE-SEEEEEECC...HHHTT-T
*->fyntSlaGDElgdirtwgtrpraradldfsvlltsptr<-*
f+++S +GDEl+ +++ g++p r +l+ +l+++++
gi|8907599 1479 FGGVSIVGDELHSTPASGSHPAKRFELE---ILAPGQQ 1513
PKD: domain 1 of 1, from 1614 to 1634: score 2.4, E = 3.5
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
t++Lt++n+ gs + ++ V
gi|8907599 1614 TIQLTAMNDDGSLIEQ-SPIFV 1634
DUF371: domain 1 of 1, from 1825 to 1845: score 1.2, E = 9.6
*->dgdaiitvtLevggltDeitG<-*
+g+++++++++++ ltD ++G
gi|8907599 1825 SGESYLRLRITDDTLTDSVIG 1845
Phage_sheath_1: domain 1 of 1, from 1830 to 1841: score -0.9, E = 6.1
*->FrfviTstylvd<-*
+r++iT++ l+d
gi|8907599 1830 LRLRITDDTLTD 1841
BPL_LipA_LipB: domain 1 of 1, from 1864 to 1873: score 2.8, E = 3.3
CS EEEEEEEEEC
*->hhgtlgvgiN<-*
h++t++v+i+
gi|8907599 1864 HQITINVDID 1873
PPC: domain 1 of 1, from 2108 to 2168: score 3.4, E = 2.9
CS EEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCS ESSSST
*->sFtvpaggtlsisldggsslrslsgnGdadtlLywlldgd.pslsay
+++v+ g++ls++ dg+++ d d + + +l+++ +++
gi|8907599 2108 RWSVSDGDDLSVDDDGNGD--------DEDGVTF-ALYKGvVGDTSI 2145
CS TCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
daystTrdvdnggsdelisftapeaGtYyirVyg<-*
+++s ++i + e+G i+V+
gi|8907599 2146 SWNS-----------SSIAVETSEDGYVSIWVDW 2168
ig: domain 1 of 1, from 2166 to 2211: score 2.2, E = 6.6
CS EEEEEETTC-SS-CEEEEEEETSSCCCEEEEEEESSE-GGG-EEEEE
*->vtWfkegkgleessetgtdenrvssqtstslLtisnvteedsGtYtC
v+W+ +g+ +e+ ++++ d+ ++++++ ++ s +GtY+
gi|8907599 2166 VDWQNDGQFTESDDDIVLDWAVDKGSNI---YRMSIPGSVGNGTYWA 2209
CS EE
vv<-*
+v
gi|8907599 2210 RV 2211
Phage-Gp8: domain 1 of 1, from 2251 to 2312: score -0.7, E = 9.3
CS EEE-HH HHHHT--SSEEEE--HHHHHHSTGGGT-TT-STHHHHTT
*->YtIPPd..vvinrcTnEyIVVPfPeeliaDPnrWgydnnitwyeddy
++IPP+++ +i TnE IV Pn+ g++ + w ++++
gi|8907599 2251 FEIPPSsnSSISGTTNEVIVT---------PNA-GMQRGAFWTQNRF 2287
CS -HHHHTT--EEEEEEEEEGGGSGCCSST
nliyrvkvntlRFraYldsayfpeaslp<-*
+++++ lRF +Yl ++ a+++
gi|8907599 2288 DMNSEFR---LRFGIYLGDRDGNGADGV 2312
OstA_C: domain 1 of 1, from 2276 to 2299: score 0.4, E = 4.9
*->knRgyrfnwkhqfrindnWsGfgvdy<-*
++Rg+ f ++ +f++n+ ++ +++ +
gi|8907599 2276 MQRGA-FWTQNRFDMNSEFR-LRFGI 2299
Lectin_legB: domain 1 of 1, from 2306 to 2349: score 0.2, E = 7.3
CS SS-BEEEEEEEEETT--S.TTBSSGGGTTTSSTTSTTGGGGCCEEEE
*->gngGdGLAFflaPsdtqdppgassggyLGLfNssnngdnpsNhiVAV
gng+dG +F++ +++ s++g LG++ s+ g +++ ++++V
gi|8907599 2306 GNGADGVVFVMHNDP-------SGTGALGVVG-SGLGAKNIQNSFGV 2344
CS EEETS
EFDTv<-*
EFDT+
gi|8907599 2345 EFDTF 2349
DUF302: domain 1 of 1, from 2309 to 2320: score 5.0, E = 1.4
CS ETTEEEEEE--H
*->edGkvevsyidP<-*
+dG+v+v+++dP
gi|8907599 2309 ADGVVFVMHNDP 2320
P68HR: domain 1 of 1, from 2335 to 2364: score 5.6, E = 1.3
*->sAGkqgGFrtgnprgtYqnGYdsLlkrdfGskaqn<-*
+ ++q +F g + t++nG +s d G+++
gi|8907599 2335 AKNIQNSF--GVEFDTFENGPGS---NDLGNQSDH 2364
UCR_TM: domain 1 of 1, from 2364 to 2379: score 6.4, E = 0.36
*->AhTDvPevPDfSeLSSVP<-*
hT++ +P S+LSSVP
gi|8907599 2364 -HTAI-MIPSTSNLSSVP 2379
Prenyltrans: domain 1 of 1, from 2423 to 2438: score 3.3, E = 5.5
CS HHHHHHHHHHHHHHTC
*->dtyytycalaaLallg<-*
d+ +ty++ ++L+++g
gi|8907599 2423 DLVNTYFGGSSLIYYG 2438
RanGAP1_C: domain 1 of 1, from 2672 to 2688: score 1.2, E = 3.7
CS GGTTHHHHHHHHHHHHH
*->LEscasARhaLlitLyk<-*
LEs+ ARh L + y
gi|8907599 2672 LESNNGARHGLGTNRYD 2688
DUF548: domain 1 of 1, from 2685 to 2693: score -0.2, E = 9.8
*->hRFDIYlpa<-*
+R+D Yl++
gi|8907599 2685 NRYDLYLGT 2693
TSP_3: domain 5 of 6, from 2696 to 2711: score 0.4, E = 65
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
D+DnDg+ + D
gi|8907599 2696 PDADNDGFVNGvDVST 2711
Dockerin_1: domain 3 of 3, from 2697 to 2710: score 2.9, E = 9.4
CS -TT-SS--SHHHHH
*->DvNgDGkVnalDla<-*
D ++DG Vn+ D +
gi|8907599 2697 DADNDGFVNGVDVS 2710
DUF1174: domain 1 of 1, from 2781 to 2810: score 4.0, E = 4.9
*->ssEetttsAvtEasg....EEtttsAvtEa<-*
s e t+A t++s++ + t+sA +E
gi|8907599 2781 SNNEYATAACTDGSAtlsfNGFTISATSEI 2810
PilS: domain 2 of 2, from 2786 to 2802: score 4.4, E = 0.67
*->AtmItaCtaDnGrtGtNTltfTsn<-*
At +aCt++ ++Tl f+ +
gi|8907599 2786 AT--AACTDG-----SATLSFNGF 2802
MAP1B_neuraxin: domain 1 of 3, from 2818 to 2827: score 3.9, E = 2.7
*->TTrtPddsgY<-*
TT t+d++gY
gi|8907599 2818 TTDTLDAEGY 2827
Cna_B: domain 1 of 1, from 2879 to 2923: score 15.3, E = 0.00036
CS -TT-EEEEEETTEEE E--TTSEEEEEEE....-SEEEEEEE
*->LeGAeftLldkdgnv......tTdenGkytftnLPKykppGdYtvkE
++G+++tL++ + + ++ ++ Td++G+y+ L + G Yt+ E
gi|8907599 2879 IPGVTITLYNRTPGNescqsiQTDADGNYSLAAL----EGGLYTIFE 2921
CS EE
tk<-*
t+
gi|8907599 2922 TA 2923
Pox_A30L_A26L: domain 1 of 1, from 2966 to 2985: score 3.5, E = 0.59
*->mAniinLWnGivPtvqDvnvA<-*
An i L n iv vqD n A
gi|8907599 2966 -ANQIVLNNPIVASVQDQNFA 2985
Sipho_tail: domain 1 of 1, from 3078 to 3089: score 0.3, E = 2.5
*->asviFNGvdLSe<-*
+sv FN vd+++
gi|8907599 3078 FSVAFNQVDITD 3089
WD40: domain 2 of 2, from 3132 to 3155: score 1.0, E = 18
CS EEEEETTSSSEEEEEETTSEEEEEE
*->cvafspdsgpllasgSrDgtikiWd<-*
+va++p +++ rDgt+k +d
gi|8907599 3132 DVAINPL-NNVMYGVLRDGTVKRYD 3155
SKN1: domain 1 of 1, from 3158 to 3190: score -1.3, E = 3.8
*->seRdLTeNaPkihissSeNqeendgfnsdhnsaNplss<-*
+LT+ +i+ +N+e+ + +++ns+ +++s
gi|8907599 3158 NNTELTSG----RITHITNSETENDVRRSYNST-DFGS 3190
DUF1923: domain 1 of 1, from 3225 to 3239: score 1.1, E = 5.7
CS EEEEE-SSS-EEEEE
*->viAAnvGKEPKEitG<-*
++A +G EPK itG
gi|8907599 3225 IVAVPIGNEPKNITG 3239
DUF297: domain 1 of 1, from 3279 to 3296: score 0.2, E = 7.6
CS EEEE-SS--H HHH...HHHH
*->DYvddgakid.eniYTTtRar<-*
DY+ ++++ ++e i tR++
gi|8907599 3279 DYIVTSDDGGpEHI---TRNN 3296
RNA_pol_Rpb2_6: domain 1 of 1, from 3287 to 3317: score -1.5, E = 9.2
CS .EE-B--S--TT....--CCCHCCB-TTSBB-TT-
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->ggpEeitrpipnvrggvseaalrkLDedGIvrvGa<-*
ggpE+itr+++ + +++ + D+dG+ vGa
gi|8907599 3287 GGPEHITRNNDV----WLGDNRPDNDDDGVNTVGA 3317
MAP1B_neuraxin: domain 2 of 3, from 3323 to 3331: score 0.1, E = 51
*->TTrtPddsg<-*
+++tPdd++
gi|8907599 3323 IGSTPDDED 3331
Big_2: domain 1 of 1, from 3334 to 3362: score 1.9, E = 7
CS E....TTTEEEEE-SSS-EEEEEEETT.TEEEEEEE
*->sntnSgstGlVtalakGtatItatsgdgnksasvtv<-*
s ++ +V +a G a It+ + + n++ ++t+
gi|8907599 3334 S-----NQVRVFVNA-GAAEITVPFTN-NSGSEATI 3362
RNA_lig_T4_1: domain 1 of 1, from 3372 to 3381: score 0.6, E = 10
CS TT-HHHHHHH
*->ngehDDLkal<-*
ng +DDL+a+
gi|8907599 3372 NGFSDDLRAQ 3381
tRNA-synt_1d: domain 1 of 1, from 3457 to 3469: score 0.9, E = 3.5
*->lssnrdtdydfDl<-*
+ss ++t+yd Dl
gi|8907599 3457 TSSANTTSYDLDL 3469
PD40: domain 2 of 2, from 3500 to 3517: score 0.7, E = 18
*->DGktivFssnrgdgddgsGsfdiyv<-*
+G +++++s+ + Gs+++ v
gi|8907599 3500 NG-RMFYASSID------GSDQLHV 3517
TcpF: domain 1 of 1, from 3514 to 3538: score -0.3, E = 8.8
*->qtqvvltkkdgsGVkLYskaySeeF<-*
q+ v++ +kdg+ V L + Se F
gi|8907599 3514 QLHVIMLDKDGNAVDLGLPIASEDF 3538
IgG_binding_B: domain 1 of 1, from 3622 to 3636: score 3.0, E = 3.9
*->ewlydtatktftvte<-*
+w+yd t++ ++te
gi|8907599 3622 DWAYDPTTQAIYATE 3636
DUF211: domain 1 of 1, from 3657 to 3673: score -0.2, E = 9.3
*->LDYdeIketIEelGGvI<-*
LD++ I ++E++G +I
gi|8907599 3657 LDFGTINPKVESYGLII 3673
DUF1450: domain 1 of 1, from 3679 to 3687: score 1.0, E = 8.8
*->lfALVnGev<-*
l+ALV+Ge+
gi|8907599 3679 LYALVDGEY 3687
TSP_3: domain 6 of 6, from 3687 to 3699: score 2.4, E = 16
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsD++g+ D+
gi|8907599 3687 YDSDGNGIL--DTTG 3699
HXXSHH: domain 1 of 1, from 3747 to 3776: score 0.3, E = 5.1
*->sLSHh..gndeeklaklakidrwhveqfAy<-*
++SH+ + +d +++ ++ + d+w +e fA+
gi|8907599 3747 DASHYysDDDNNGVTDYSLGDAWDSEFFAH 3776
zf-DNL: domain 1 of 1, from 3783 to 3807: score 2.4, E = 5.6
*->aDNLglFsdlkgkRniesslaakgeev<-*
aDNL+ d++g i++ + g++v
gi|8907599 3783 ADNLNGLIDEDGV--IIDGALLAGTNV 3807
Germane: domain 1 of 1, from 3835 to 3862: score 1.5, E = 9.8
*->siVnTLtqfpgvdkVqilveGkplellg<-*
++ T+ + g + V + v+G +l ++
gi|8907599 3835 QVIATALPAAGTHAVDLVVDGAKLGTYS 3862
UPF0300: domain 1 of 1, from 3867 to 3882: score 3.9, E = 1.2
*->mrkelleDLslCekfe<-*
+r ++ +++s C+kf+
gi|8907599 3867 LRFRFCKEASHCDKFN 3882
MNNL: domain 1 of 1, from 3921 to 3927: score 2.5, E = 5.7
*->ssGvFEL<-*
ssG+FEL
gi|8907599 3921 SSGNFEL 3927
Apc15p: domain 1 of 1, from 3946 to 3965: score 1.9, E = 3.3
*->kyimSLsAYNvanelPyYPTS<-*
+i SL YN n l PTS
gi|8907599 3946 -SITSLPSYNSLNALGQHPTS 3965
Flagellin_C: domain 1 of 1, from 4015 to 4025: score 4.1, E = 2.6
*->ssnmtKnQILq<-*
++n+tKnQ L+
gi|8907599 4015 VVNFTKNQLLS 4025
Osmo_CC: domain 1 of 1, from 4039 to 4059: score 2.6, E = 4.5
*->sDieEAkElLqehydniEqKi<-*
+Di+ E L h+dn q i
gi|8907599 4039 GDIDPSGEFLYVHHDNWQQMI 4059
DUF1683: domain 1 of 1, from 4059 to 4078: score 2.6, E = 3.3
*->vrveLkNpTklvqEveanline<-*
+r++L N+T +++E+++++ +
gi|8907599 4059 IRIHLINRTFEIVEFDTAV--N 4078
DUF328: domain 1 of 1, from 4085 to 4098: score 1.3, E = 4.9
*->gFadldGYafdeelS<-*
+F +dG+ ++++l
gi|8907599 4085 AF-ASDGFLYNPDLP 4098
DUF1512: domain 1 of 1, from 4218 to 4225: score -1.6, E = 8.2
*->GNTVGVpq<-*
GN+ G+++
gi|8907599 4218 GNSNGIAD 4225
Radial_spoke: domain 1 of 1, from 4233 to 4268: score 0.2, E = 4
*->kvaaqalaevslfgdplfvrdpeegEpddsdapnet<-*
+++ + + ++ +gd+l+++d+e g+ +++ ++et
gi|8907599 4233 DPELAQVFSADATGDDLLELDDEDGVVVPESIVVET 4268
Methyltransf_6: domain 1 of 1, from 4254 to 4260: score 0.8, E = 7.2
CS ETTEEEE
*->DndGivV<-*
D+dG+vV
gi|8907599 4254 DEDGVVV 4260
CRAM_rpt: domain 1 of 1, from 4347 to 4361: score 3.2, E = 1.1
*->GDCnEtDDCditGDCn<-*
GDCnE DD + GD
gi|8907599 4347 GDCNEPDDVSL-GDIA 4361
Stap_Strp_toxin: domain 1 of 1, from 4390 to 4396: score 2.5, E = 4.8
CS SEEEEST
*->GGVTlhe<-*
GGVT h+
gi|8907599 4390 GGVTAHD 4396
MAP1B_neuraxin: domain 3 of 3, from 4431 to 4440: score 1.4, E = 18
*->TTrtPddsgY<-*
TTrt + ++Y
gi|8907599 4431 TTRTRGNGSY 4440
DUF2202: domain 1 of 1, from 4445 to 4460: score 1.1, E = 8
*->PQYiSesEfdEIvssp<-*
P+ i e+++d Iv s
gi|8907599 4445 PVEIAEEQVDLIVESQ 4460
Baculo_p24: domain 1 of 1, from 4562 to 4585: score 2.2, E = 3.6
*->sninglLesiKsElqaDltnKlaFs<-*
+n+ng++++ +s +++ +F
gi|8907599 4562 ANCNGAIDTTES-IINSTVSLATFT 4585
Nup133_N: domain 1 of 1, from 4568 to 4609: score 0.2, E = 3.6
*->edessftvfsthplntytsppsfqsesdllkprLviPksgatatavt
+d+++ ++st+ l t+t++++ + ++ r++iP++ + +
gi|8907599 4568 IDTTESIINSTVSLATFTESDN----DICIVSRIYIPENAPLN---- 4606
svF<-*
s+F
gi|8907599 4607 SIF 4609
DicB: domain 1 of 1, from 4589 to 4597: score 2.8, E = 1.7
*->NevcIlSmL<-*
N++cI+S++
gi|8907599 4589 NDICIVSRI 4597
ClpB_D2-small: domain 1 of 1, from 4629 to 4647: score 1.6, E = 5.3
CS S-TT-EEEEEE- .....SSSE
*->lkeGdtvrvdvd.dgeggelvf<-*
+k++dtv+v+ +++g +l++
gi|8907599 4629 VKDNDTVKVSFKgAG---QLTI 4647
PC_rep: domain 2 of 2, from 4661 to 4688: score 3.2, E = 5.1
*->GlihaGsgnedealelLlvpyllsdtsnevra<-*
G+ ++G +n+ +le+ ++ +++ s+++r+
gi|8907599 4661 GISNLGKPND--ILEYEI-QF-INNGSDDIRS 4688
DNA_pol_viral_C: domain 1 of 1, from 4715 to 4723: score -1.9, E = 7.2
*->gvlCsVFAD<-*
gv C+VFAD
gi|8907599 4715 GVTCQVFAD 4723
Aegerolysin: domain 1 of 1, from 4746 to 4758: score 1.6, E = 6.4
*->GalGtVtvtvQtssrk<-*
G++G+Vt++v k
gi|8907599 4746 GDQGHVTYRV---KIK 4758
//