hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 89076705.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|89076705|ref|ZP_01162994.1|
Accession: [none]
Description: hypothetical protein SKA34_09293 [Photobacterium sp. SKA34]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TSP_3 Thrombospondin type 3 repeat 62.8 1.3e-17 15
Dockerin_1 Dockerin type I repeat 12.0 0.015 4
Binary_toxB Clostridial binary toxin B/anthrax to 5.1 0.15 5
PSD1 Protein of unknown function (DUF1553) 5.3 0.22 1
FG-GAP FG-GAP repeat 8.0 0.25 2
PAN_2 PAN-like domain 6.3 0.38 1
DUF1912 Domain of unknown function (DUF1912) 4.9 0.75 1
CBM_4_9 Carbohydrate binding domain 4.1 1 1
Excalibur Excalibur calcium-binding domain 4.2 1.2 1
fn3 Fibronectin type III domain 4.7 1.3 2
Molydop_binding Molydopterin dinucleotide binding dom 4.5 1.5 1
DUF2402 Putative GPI-anchored glycine-serine 4.8 1.6 1
Cu-oxidase Multicopper oxidase 3.2 1.8 1
DUF2356 Conserved protein (DUF2356) 1.8 2 1
GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) fa 0.8 2.1 1
RE_ScaI ScaI restriction endonuclease 3.7 2.2 1
DUF914 Eukaryotic protein of unknown functio 1.4 2.2 1
RuvB_C Holliday junction DNA helicase ruvB C 4.7 2.3 1
Col_cuticle_N Nematode cuticle collagen N-terminal 3.1 2.5 1
DUF411 Protein of unknown function, DUF 0.3 2.8 1
Mis14 Kinetochore protein Mis14 like 3.0 2.9 1
DUF823 Salmonella repeat of unknown function 1.1 3.1 1
DNA_pol_B_2 DNA polymerase type B, organellar and 1.2 3.2 1
NLE NLE (NUC135) domain 3.5 3.4 1
KNTase_C KNTase C-terminal domain 0.5 3.8 1
PilS PilS N terminal 1.8 3.9 2
DUF2031 Protein of unknown function (DUF2031) 1.5 4 1
RHS_repeat RHS Repeat 3.4 4.1 1
FlaG FlaG protein 2.9 4.4 1
Baculo_LEF-10 Baculovirus late expression factor 10 1.5 5.3 1
DUF1174 Repeat of unknown function (DUF1174) 3.9 5.3 1
NosD Periplasmic copper-binding protein (N 3.0 5.4 1
Sina Seven in absentia protein family 1.3 5.7 1
MSP1_C Merozoite surface protein 1 (MSP1) C- -0.9 5.7 1
RED_C RED-like protein C-terminal region 0.4 5.7 1
eIF2A Eukaryotic translation initiation fac 1.4 5.9 1
F_bP_aldolase Fructose-bisphosphate aldolase class- 0.7 6.1 1
RecX RecX family 1.7 6.4 1
HET Heterokaryon incompatibility protein -0.5 6.4 1
N1221 N1221-like protein 0.2 6.5 1
Staphylokinase Staphylokinase/Streptokinase family 1.9 6.5 1
LRR_1 Leucine Rich Repeat 3.4 6.7 1
Trs120 Transport protein Trs120 0.2 6.9 1
tRNA_bind Putative tRNA binding domain 2.0 7 1
Adaptin_binding Alpha and gamma adaptin binding prote -0.5 7.2 1
Tautomerase Tautomerase enzyme 2.8 7.2 1
DHC_N1 Dynein heavy chain, N-terminal region -1.0 7.3 1
Vps52 Vps52 / Sac2 family -1.3 7.4 1
NUC129 NUC129 domain 1.2 7.5 1
ITI_HC_C Inter-alpha-trypsin inhibitor heavy c 0.1 7.7 1
Toxin_R_bind_N Clostridium neurotoxin, N-terminal re 0.0 7.8 1
B2-adapt-app_C Beta2-adaptin appendage, C-terminal s 1.6 8.2 1
PhoPQ_related PhoPQ-activated pathogenicity-related -2.7 9 1
Phage_mat-A Phage maturation protein -1.9 9.5 1
MobB Molybdopterin guanine dinucleotide sy 0.8 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF2031 1/1 1 33 [. 204 236 .] 1.5 4
Baculo_LEF-10 1/1 25 40 .. 1 21 [. 1.5 5.3
LRR_1 1/1 56 77 .. 1 25 [] 3.4 6.7
DUF2356 1/1 96 117 .. 1 26 [. 1.8 2
RecX 1/1 125 140 .. 117 132 .] 1.7 6.4
Excalibur 1/1 193 206 .. 26 38 .. 4.2 1.2
Binary_toxB 1/5 198 206 .. 1 9 [. 1.8 1.4
TSP_3 1/15 199 214 .. 1 15 [] 4.6 3.6
Toxin_R_bind_N 1/1 366 386 .. 176 198 .. 0.0 7.8
CBM_4_9 1/1 373 389 .. 156 172 .] 4.1 1
TSP_3 2/15 396 408 .. 1 15 [] 4.7 3.2
TSP_3 3/15 409 421 .. 1 15 [] 2.3 17
F_bP_aldolase 1/1 414 425 .. 96 113 .. 0.7 6.1
NLE 1/1 419 448 .. 1 32 [. 3.5 3.4
DUF823 1/1 423 429 .. 1 7 [. 1.1 3.1
Dockerin_1 1/4 426 436 .. 1 11 [. 6.3 0.86
Staphylokinase 1/1 429 454 .. 1 26 [. 1.9 6.5
RHS_repeat 1/1 438 452 .. 1 18 [. 3.4 4.1
Sina 1/1 664 675 .. 200 211 .] 1.3 5.7
PilS 1/2 726 742 .. 145 161 .] 1.2 5.8
MobB 1/1 771 792 .. 136 158 .] 0.8 9.5
FlaG 1/1 1170 1183 .. 109 122 .] 2.9 4.4
TSP_3 4/15 1209 1221 .. 1 15 [] 4.1 4.9
Dockerin_1 2/4 1210 1222 .. 1 13 [. 0.3 62
Mis14 1/1 1212 1261 .. 109 161 .] 3.0 2.9
tRNA_bind 1/1 1222 1241 .. 84 103 .] 2.0 7
MSP1_C 1/1 1257 1272 .. 567 582 .] -0.9 5.7
ITI_HC_C 1/1 1268 1278 .. 1 11 [. 0.1 7.7
RED_C 1/1 1336 1355 .. 109 129 .] 0.4 5.7
fn3 1/2 1366 1389 .. 64 84 .] 2.3 6.4
Tautomerase 1/1 1397 1411 .. 48 62 .] 2.8 7.2
HET 1/1 1424 1431 .. 1 8 [. -0.5 6.4
Binary_toxB 2/5 1475 1488 .. 1 14 [. 1.5 1.7
TSP_3 5/15 1476 1488 .. 1 15 [] 1.0 41
Vps52 1/1 1487 1496 .. 1 10 [. -1.3 7.4
DNA_pol_B_2 1/1 1494 1534 .. 491 531 .] 1.2 3.2
NosD 1/1 1545 1561 .. 32 56 .. 3.0 5.4
TSP_3 6/15 1550 1562 .. 1 15 [] 8.8 0.2
TSP_3 7/15 1576 1591 .. 1 15 [] 9.1 0.16
N1221 1/1 1629 1649 .. 1 21 [. 0.2 6.5
PhoPQ_related 1/1 1630 1636 .. 399 405 .] -2.7 9
DUF914 1/1 1634 1660 .. 312 338 .] 1.4 2.2
DUF1912 1/1 1648 1662 .. 70 84 .] 4.9 0.75
PSD1 1/1 1685 1699 .. 268 282 .] 5.3 0.22
Col_cuticle_N 1/1 1777 1796 .. 40 66 .] 3.1 2.5
KNTase_C 1/1 1793 1811 .. 1 19 [. 0.5 3.8
DUF411 1/1 1929 1941 .. 1 14 [. 0.3 2.8
fn3 2/2 2050 2068 .. 68 84 .] 2.4 6.1
FG-GAP 1/2 2061 2077 .. 1 17 [. 3.1 6.7
Binary_toxB 3/5 2067 2078 .. 1 12 [. 0.2 3.9
TSP_3 8/15 2068 2080 .. 1 15 [] 6.6 0.91
Dockerin_1 3/4 2069 2081 .. 1 13 [. 2.7 11
TSP_3 9/15 2081 2093 .. 1 15 [] 0.9 45
RuvB_C 1/1 2088 2097 .. 1 10 [. 4.7 2.3
eIF2A 1/1 2195 2212 .. 185 204 .] 1.4 5.9
PAN_2 1/1 2195 2221 .. 1 27 [. 6.3 0.38
Cu-oxidase 1/1 2217 2234 .. 76 94 .. 3.2 1.8
DUF2402 1/1 2250 2277 .. 1 31 [. 4.8 1.6
DUF1174 1/1 2259 2284 .. 1 26 [] 3.9 5.3
Binary_toxB 4/5 2321 2334 .. 1 14 [. 1.5 1.7
TSP_3 10/15 2322 2334 .. 1 15 [] 1.0 41
TSP_3 11/15 2395 2407 .. 1 15 [] 1.9 23
FG-GAP 2/2 2413 2430 .. 1 18 [. 4.9 1.9
TSP_3 12/15 2420 2435 .. 1 15 [] 7.0 0.67
Trs120 1/1 2446 2464 .. 247 265 .. 0.2 6.9
Phage_mat-A 1/1 2447 2461 .. 1 17 [. -1.9 9.5
TSP_3 13/15 2529 2543 .. 1 15 [] 1.2 36
NUC129 1/1 2639 2649 .. 1 11 [. 1.2 7.5
B2-adapt-app_C 1/1 2779 2798 .. 1 20 [. 1.6 8.2
GDA1_CD39 1/1 2860 2874 .. 1 15 [. 0.8 2.1
Molydop_binding 1/1 2892 2908 .. 97 113 .] 4.5 1.5
RE_ScaI 1/1 2968 2979 .. 185 196 .] 3.7 2.2
PilS 2/2 3222 3248 .. 68 100 .. 0.6 8.6
DHC_N1 1/1 3236 3253 .. 599 617 .] -1.0 7.3
Adaptin_binding 1/1 3252 3262 .. 1 11 [. -0.5 7.2
Binary_toxB 5/5 3309 3320 .. 1 12 [. 0.2 4
TSP_3 14/15 3310 3322 .. 1 15 [] 6.0 1.3
Dockerin_1 4/4 3311 3323 .. 1 13 [. 2.7 11
TSP_3 15/15 3323 3335 .. 1 15 [] 3.5 7.2
Alignments of top-scoring domains:
DUF2031: domain 1 of 1, from 1 to 33: score 1.5, E = 4
*->eakklikrglllivislailisGtlyllfliip<-*
+++k+ + + li++++++lisG y ++ +
gi|8907670 1 MINKIKNSSVKLIITCFLALISGSAYSSNVCES 33
Baculo_LEF-10: domain 1 of 1, from 25 to 40: score 1.5, E = 5.3
*->SsslsasDvDvlncILkdNLe<-*
++s+ +v IL++NLe
gi|8907670 25 AYSS-----NVCESILNNNLE 40
LRR_1: domain 1 of 1, from 56 to 77: score 3.4, E = 6.7
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
e LdL++ N ++ + +++ l++
gi|8907670 56 AFEMLDLNH-N--KI-DGIDDILnKI 77
DUF2356: domain 1 of 1, from 96 to 117: score 1.8, E = 2
*->qLWrDlilnPqtLshvpeFngIwnDL<-*
+ ++D+ tLs ++e++++++D+
gi|8907670 96 KFGKDI----ITLSNISEYKEVIEDI 117
RecX: domain 1 of 1, from 125 to 140: score 1.7, E = 6.4
*->dvidelacliveneed<-*
+vi lac i+enee
gi|8907670 125 GVINLLACDIGENEEG 140
Excalibur: domain 1 of 1, from 193 to 206: score 4.2, E = 1.2
*->g.DphkLDrDgDGi<-*
++D+ LD D+DGi
gi|8907670 193 YsDVLDLDSDNDGI 206
Binary_toxB: domain 1 of 5, from 198 to 206: score 1.8, E = 1.4
*->dlDtDnDgI<-*
dlD+DnDgI
gi|8907670 198 DLDSDNDGI 206
TSP_3: domain 1 of 15, from 199 to 214: score 4.6, E = 3.6
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
DsDnDg+ + + C
gi|8907670 199 LDSDNDGILNTdEGCS 214
Toxin_R_bind_N: domain 1 of 1, from 366 to 386: score 0.0, E = 7.8
CS EEEEEESS--TT-EEEEEEEEEE
*->nIsfKldgcvdeNnyiwIeyFsI<-*
nI+f +++d N+ ++I+++sI
gi|8907670 366 NITF--RNDTDANTALYIDGLSI 386
CBM_4_9: domain 1 of 1, from 373 to 389: score 4.1, E = 1
*->pdsttdfyvDdvsltdv<-*
+d++t++y+D s+t++
gi|8907670 373 TDANTALYIDGLSITGD 389
TSP_3: domain 2 of 15, from 396 to 408: score 4.7, E = 3.2
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D+D Dg D+ d
gi|8907670 396 QDTDTDGTP--DHLD 408
TSP_3: domain 3 of 15, from 409 to 421: score 2.3, E = 17
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+DsD+D Da +
gi|8907670 409 TDSDGDTCK--DAIE 421
F_bP_aldolase: domain 1 of 1, from 414 to 425: score 0.7, E = 6.1
*->edileAieayfkhgPGFt<-*
+++++Aiea GFt
gi|8907670 414 DTCKDAIEA------GFT 425
NLE: domain 1 of 1, from 419 to 448: score 3.5, E = 3.4
*->qVqvrFvTkegdellavpdspfaiPvdltrae<-*
+++ F++ +gd + v+++ ++ + ++t +
gi|8907670 419 AIEAGFTDANGDGE--VDGTGYDADGKVTGSD 448
DUF823: domain 1 of 1, from 423 to 429: score 1.1, E = 3.1
*->GvTgAdG<-*
G+T+A+G
gi|8907670 423 GFTDANG 429
Dockerin_1: domain 1 of 4, from 426 to 436: score 6.3, E = 0.86
CS -TT-SS--SHH
*->DvNgDGkVnal<-*
D NgDG V+++
gi|8907670 426 DANGDGEVDGT 436
Staphylokinase: domain 1 of 1, from 429 to 454: score 1.9, E = 6.5
CS CSESCCCSSEEEEEEEEEEETTS-CC
*->npaesvnteykvsfnvkgvDldfnel<-*
++e+++t+y+ +++v+g+D+ ++++
gi|8907670 429 GDGEVDGTGYDADGKVTGSDGYTTPA 454
RHS_repeat: domain 1 of 1, from 438 to 452: score 3.4, E = 4.1
*->YDanGrLtavtdpsgpvg<-*
YDa+G++t+ ++g ++
gi|8907670 438 YDADGKVTG---SDGYTT 452
Sina: domain 1 of 1, from 664 to 675: score 1.3, E = 5.7
CS ..SSSEEEEEEE
*->GsedgnLglnVt<-*
Gs+d+ ++ nVt
gi|8907670 664 GSDDEDAHQNVT 675
PilS: domain 1 of 2, from 726 to 742: score 1.2, E = 5.8
*->taDnGrtGtNTltfTsn<-*
+a++ +tG+++lt+T
gi|8907670 726 DANDNSTGSASLTWTGL 742
MobB: domain 1 of 1, from 771 to 792: score 0.8, E = 9.5
CS .........GG..TTTEEEEEES
*->deidglivdeltevdeilkavvs<-*
de+++ vd++ e++++l+ v+s
gi|8907670 771 DERAMGAVDDG-EIEDHLISVIS 792
FlaG: domain 1 of 1, from 1170 to 1183: score 2.9, E = 4.4
*->tnlgsrlGlLfDkr<-*
t++ +++G+ fD+
gi|8907670 1170 TGGQHNHGIVFDNL 1183
TSP_3: domain 4 of 15, from 1209 to 1221: score 4.1, E = 4.9
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D D+Dgv D d
gi|8907670 1209 SDFDKDGVP--DGRD 1221
Dockerin_1: domain 2 of 4, from 1210 to 1222: score 0.3, E = 62
CS -TT-SS--SHHHH
*->DvNgDGkVnalDl<-*
D ++DG+ +++Dl
gi|8907670 1210 DFDKDGVPDGRDL 1222
Mis14: domain 1 of 1, from 1212 to 1261: score 3.0, E = 2.9
*->dlksdpdlenedaDeetsadqvtkeaweevksdkslqryresLssvk
d +pd+ d+D ++ d+ e+ ++v s+ qr+ ++++v
gi|8907670 1212 DKDGVPDGRDLDDDNDGILDV--DEDCSVVHSE-NFQRFSDAFNEVP 1255
rlqpsi<-*
lq++i
gi|8907670 1256 SLQAAI 1261
tRNA_bind: domain 1 of 1, from 1222 to 1241: score 2.0, E = 7
CS CCSSEEEEEEESTT-TTTEE
*->ldggkvelleppadvppGtr<-*
ld++++++l++++d+ + +
gi|8907670 1222 LDDDNDGILDVDEDCSVVHS 1241
MSP1_C: domain 1 of 1, from 1257 to 1272: score -0.9, E = 5.7
*->LkkkinnckvEKkEae<-*
L++ i++ vE +++e
gi|8907670 1257 LQAAIDSTTVEATGFE 1272
ITI_HC_C: domain 1 of 1, from 1268 to 1278: score 0.1, E = 7.7
*->eqGieVnGqli<-*
+G+e +Gq++
gi|8907670 1268 ATGFETTGQYT 1278
RED_C: domain 1 of 1, from 1336 to 1355: score 0.4, E = 5.7
*->GGDvasldAaggePdyKrpKY<-*
GG v s d + d+K++ Y
gi|8907670 1336 GGSVPSSDVCESD-DPKQAGY 1355
fn3: domain 1 of 2, from 1366 to 1389: score 2.3, E = 6.4
CS -TT-EEEEEEEEEETTE -EBE
*->kPgteYtvrVqAvnggG...GpeS<-*
kP+t+Y+++V + + +G++S
gi|8907670 1366 KPNTNYVFSVDVKINTNnlqGHPS 1389
Tautomerase: domain 1 of 1, from 1397 to 1411: score 2.8, E = 7.2
CS GGGGEECTTEEHHHT
*->peenwgvgGeslgdr<-*
pe +++v G+s++++
gi|8907670 1397 PEIHFYVDGVSVAQY 1411
HET: domain 1 of 1, from 1424 to 1431: score -0.5, E = 6.4
*->YitLSYvW<-*
Y t SYvW
gi|8907670 1424 YKTFSYVW 1431
Binary_toxB: domain 2 of 5, from 1475 to 1488: score 1.5, E = 1.7
*->dlDtDnDgIPDlwE<-*
d D D+DgIPD E
gi|8907670 1475 DIDADDDGIPDNIE 1488
TSP_3: domain 5 of 15, from 1476 to 1488: score 1.0, E = 41
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D+D Dg+ D +
gi|8907670 1476 IDADDDGIP--DNIE 1488
Vps52: domain 1 of 1, from 1487 to 1496: score -1.3, E = 7.4
*->verkSiqdvi<-*
+e +S+qd+i
gi|8907670 1487 IEAQSTQDYI 1496
DNA_pol_B_2: domain 1 of 1, from 1494 to 1534: score 1.2, E = 3.2
*->sdifipnstatislarsglaqlsaalydpieelyyidtdsi<-*
++if++n++a++++++ g++ ++++++ + l++ +td++
gi|8907670 1494 DYIFPSNDNAETYNINDGVNSSYITTKNGGPGLIPVNTDGT 1534
NosD: domain 1 of 1, from 1545 to 1561: score 3.0, E = 5.4
*->PvdgtGFSqtcvntDlDgDGIgDtp<-*
P d+ tD+DgDG+ D++
gi|8907670 1545 P-DYID-------TDSDGDGVLDIA 1561
TSP_3: domain 6 of 15, from 1550 to 1562: score 8.8, E = 0.2
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+DsD+Dgv D +
gi|8907670 1550 TDSDGDGVL--DIAE 1562
TSP_3: domain 7 of 15, from 1576 to 1591: score 9.1, E = 0.16
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
+D+D+Dg d Da d
gi|8907670 1576 TDTDGDGLWDIfDATD 1591
N1221: domain 1 of 1, from 1629 to 1649: score 0.2, E = 6.5
*->eaarlekrlsspassqpaldf<-*
+++l+ r+ + +s qp +df
gi|8907670 1629 LSQDLDFRDGDEPSQQPVYDF 1649
PhoPQ_related: domain 1 of 1, from 1630 to 1636: score -2.7, E = 9
*->ptaRDFR<-*
++++DFR
gi|8907670 1630 SQDLDFR 1636
DUF914: domain 1 of 1, from 1634 to 1660: score 1.4, E = 2.2
*->dveeareesvkpelkkgqgvdggdtee<-*
d+++ +e+s +p+ ++g dg+d ee
gi|8907670 1634 DFRDGDEPSQQPVYDFGDAPDGLDGEE 1660
DUF1912: domain 1 of 1, from 1648 to 1662: score 4.9, E = 0.75
CS -TTS-----------
*->gFHDlPDgLFGerhY<-*
+F D PDgL Ge Y
gi|8907670 1648 DFGDAPDGLDGEESY 1662
PSD1: domain 1 of 1, from 1685 to 1699: score 5.3, E = 0.22
*->PtdeEreelvtflqe<-*
Ptd E e+lvt+l++
gi|8907670 1685 PTDIESEALVTLLAD 1699
Col_cuticle_N: domain 1 of 1, from 1777 to 1796: score 3.1, E = 2.5
*->AWneMvdvqrsvrppskpasarfgrpf<-*
+W+e++d+++sv + f+++
gi|8907670 1777 TWGEIMDTRISVP-------SDFDNGY 1796
KNTase_C: domain 1 of 1, from 1793 to 1811: score 0.5, E = 3.8
*->DseGyleklrlaAkSveke<-*
D + y+ ++rl A S + +
gi|8907670 1793 DNGYYFIRIRLSATSIDLQ 1811
DUF411: domain 1 of 1, from 1929 to 1941: score 0.3, E = 2.8
*->eVtvhdtdqDlaav<-*
+Vtv++td +l ++
gi|8907670 1929 QVTVNETD-NLVSF 1941
fn3: domain 2 of 2, from 2050 to 2068: score 2.4, E = 6.1
CS EEEEEEEEEETTE -EBE
*->eYtvrVqAvnggG..GpeS<-*
+Y++rV+A g G+++ eS
gi|8907670 2050 DYSIRVVASGGTGggSTES 2068
FG-GAP: domain 1 of 2, from 2061 to 2077: score 3.1, E = 6.7
CS CCSCEEEC-TTSSSSSE
*->fgssvaagDlnGDGrpD<-*
+g +++ D+++DG pD
gi|8907670 2061 TGGGSTESDFDRDGVPD 2077
Binary_toxB: domain 3 of 5, from 2067 to 2078: score 0.2, E = 3.9
*->dlDtDnDgIPDl<-*
D D+Dg PD+
gi|8907670 2067 ESDFDRDGVPDS 2078
TSP_3: domain 8 of 15, from 2068 to 2080: score 6.6, E = 0.91
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D D+Dgv D+ d
gi|8907670 2068 SDFDRDGVP--DSID 2080
Dockerin_1: domain 3 of 4, from 2069 to 2081: score 2.7, E = 11
CS -TT-SS--SHHHH
*->DvNgDGkVnalDl<-*
D ++DG+ +++D+
gi|8907670 2069 DFDRDGVPDSIDI 2081
TSP_3: domain 9 of 15, from 2081 to 2093: score 0.9, E = 45
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D+DnDg+ D +
gi|8907670 2081 IDDDNDGIL--DIDE 2093
RuvB_C: domain 1 of 1, from 2088 to 2097: score 4.7, E = 2.3
CS HHT--TT---
*->mLgVDelGLD<-*
L++DelG+D
gi|8907670 2088 ILDIDELGFD 2097
eIF2A: domain 1 of 1, from 2195 to 2212: score 1.4, E = 5.9
*->ysGkLlykkdfpsgdELyqv<-*
+ G+ l+ ++f +dE+y v
gi|8907670 2195 CAGQGLNATSF--NDEFYRV 2212
PAN_2: domain 1 of 1, from 2195 to 2221: score 6.3, E = 0.38
*->CnssnksnggggDgFlrlknmKLPDtt<-*
C++++ + ++ D F+r+k LP tt
gi|8907670 2195 CAGQGLNATSFNDEFYRVKSQYLPTTT 2221
Cu-oxidase: domain 1 of 1, from 2217 to 2234: score 3.2, E = 1.8
CS SGGGEEEEETCEEEEEEEE
*->lavltVepGKtYRlRiihN<-*
l++ t+++G tYRlR+ +
gi|8907670 2217 LPTTTLKAGVTYRLRVL-M 2234
DUF2402: domain 1 of 1, from 2250 to 2277: score 4.8, E = 1.6
*->aitnsPnlgesveaGkpy.tItWspttdgpVt<-*
+i+ Pn e++ G++y t ++p+ d+pVt
gi|8907670 2250 IIN--PN--ETIVSGENYyTFDYTPSSDEPVT 2277
DUF1174: domain 1 of 1, from 2259 to 2284: score 3.9, E = 5.3
*->ssEetttsAvtEasgEEtttsAvtEa<-*
s+E+ t t +s E +tt Av +
gi|8907670 2259 SGENYYTFDYTPSSDEPVTTIAVRNN 2284
Binary_toxB: domain 4 of 5, from 2321 to 2334: score 1.5, E = 1.7
*->dlDtDnDgIPDlwE<-*
d D D+DgIPD E
gi|8907670 2321 DIDADDDGIPDNIE 2334
TSP_3: domain 10 of 15, from 2322 to 2334: score 1.0, E = 41
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D+D Dg+ D +
gi|8907670 2322 IDADDDGIP--DNIE 2334
TSP_3: domain 11 of 15, from 2395 to 2407: score 1.9, E = 23
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsD Dg D +
gi|8907670 2395 DDSDADGTA--DIAE 2407
FG-GAP: domain 2 of 2, from 2413 to 2430: score 4.9, E = 1.9
CS CCSCEEEC-TTSSSSSEE
*->fgssvaagDlnGDGrpDl<-*
s + +D +GDG+ D+
gi|8907670 2413 PDSITSSADTDGDGLLDI 2430
TSP_3: domain 12 of 15, from 2420 to 2435: score 7.0, E = 0.67
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
+D+D+Dg d Da d
gi|8907670 2420 ADTDGDGLLDIfDAND 2435
Trs120: domain 1 of 1, from 2446 to 2464: score 0.2, E = 6.9
*->iwiPppeqskatlttmkTi<-*
+w+P++e+s+ t+ ++kTi
gi|8907670 2446 LWSPTDEVSASTVAHLKTI 2464
Phage_mat-A: domain 1 of 1, from 2447 to 2461: score -1.9, E = 9.5
*->wfPeesrvdssfGvvkL<-*
w+P +++v+ s+ v L
gi|8907670 2447 WSP-TDEVSAST-VAHL 2461
TSP_3: domain 13 of 15, from 2529 to 2543: score 1.2, E = 36
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D nDgv ++Da
gi|8907670 2529 TDIENDGVPNADASG 2543
NUC129: domain 1 of 1, from 2639 to 2649: score 1.2, E = 7.5
*->YlAvRLKDeDL<-*
Y+ vRL D+ L
gi|8907670 2639 YMRVRLTDQIL 2649
B2-adapt-app_C: domain 1 of 1, from 2779 to 2798: score 1.6, E = 8.2
*->lveDseGgkldreeFeetWq<-*
l++D+ Ggkl++++F+++ +
gi|8907670 2779 LTLDIAGGKLNAGKFNQASN 2798
GDA1_CD39: domain 1 of 1, from 2860 to 2874: score 0.8, E = 2.1
*->vlachenvkYgVviD<-*
+ +++n+ Yg+v+D
gi|8907670 2860 SASLSNNRNYGIVFD 2874
Molydop_binding: domain 1 of 1, from 2892 to 2908: score 4.5, E = 1.5
CS ---B-TTT--B-TT-EE
*->sdatdPlsggPefKtta<-*
+da d +sg P++Kt +
gi|8907670 2892 GDAPDGISGEPSYKTLL 2908
RE_ScaI: domain 1 of 1, from 2968 to 2979: score 3.7, E = 2.2
*->pkveklKLlaly<-*
++ +k+KL+++y
gi|8907670 2968 TSQYKVKLKPIY 2979
PilS: domain 2 of 2, from 3222 to 3248: score 0.6, E = 8.6
*->NaWGGqVTVapaaTgGSgagnssFtiTyanVPq<-*
N++ G++ + S+ g+++++iT +n+P+
gi|8907670 3222 NTYDGAIVIP------SASGQQTVSITWTNLPA 3248
DHC_N1: domain 1 of 1, from 3236 to 3253: score -1.0, E = 7.3
*->kpGiteLtWtslnidtyie<-*
++ ++ +tWt+l +++i
gi|8907670 3236 QQTVS-ITWTNLPAWEHIN 3253
Adaptin_binding: domain 1 of 1, from 3252 to 3262: score -0.5, E = 7.2
*->kTKYYtadvpi<-*
+KYY+ ++ +
gi|8907670 3252 INKYYSIRLRL 3262
Binary_toxB: domain 5 of 5, from 3309 to 3320: score 0.2, E = 4
*->dlDtDnDgIPDl<-*
D D+Dg PD+
gi|8907670 3309 QNDFDRDGVPDS 3320
TSP_3: domain 14 of 15, from 3310 to 3322: score 6.0, E = 1.3
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D D+Dgv D+ d
gi|8907670 3310 NDFDRDGVP--DSID 3322
Dockerin_1: domain 4 of 4, from 3311 to 3323: score 2.7, E = 11
CS -TT-SS--SHHHH
*->DvNgDGkVnalDl<-*
D ++DG+ +++D+
gi|8907670 3311 DFDRDGVPDSIDI 3323
TSP_3: domain 15 of 15, from 3323 to 3335: score 3.5, E = 7.2
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D+DnDg+ D +
gi|8907670 3323 IDDDNDGIL--DLVE 3335
//