hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 89093359.fa
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Query sequence: gi|89093359|ref|ZP_01166308.1|
Accession: [none]
Description: lipoprotein receptor-related protein [Oceanospirillum sp. MED92]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Chlam_PMP Chlamydia polymorphic membrane protei 32.3 1.7e-07 3
PPC Bacterial pre-peptidase C-terminal do 7.2 0.22 4
Sporozoite_P67 Sporozoite P67 surface antigen 1.5 0.31 1
Cadherin Cadherin domain 6.6 0.35 1
MNNL N terminus of Notch ligand 6.1 0.57 2
CRPA Chlamydia 15 kDa cysteine-rich outer 4.5 0.63 1
Aerolysin Aerolysin toxin 3.5 0.75 1
Phage_coat Phage PP7 coat protein 2.4 0.78 2
Flagellin_IN Flagellin hook IN motif 5.8 0.88 4
DUF2281 Protein of unknown function (DUF2281) 5.0 1.1 1
IpaD Invasion plasmid antigen IpaD 1.0 1.2 2
Fil_haemagg Haemagluttinin repeat 4.7 1.2 1
HipA_C HipA-like C-terminal domain 3.4 1.3 1
Reg_prop Two component regulator propeller 7.6 1.5 1
RNase_PH 3' exoribonuclease family, domain 1 3.5 1.6 1
Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosp 3.0 1.8 1
HD-ZIP_N HD-ZIP protein N terminus 2.1 1.8 1
Tir_receptor_C Translocated intimin receptor (Tir) C 2.2 1.9 1
Sialidase Sialidase, N-terminal domain 2.9 2 3
ABC2_membrane ABC-2 type transporter 2.2 2.2 1
DUF1310 Protein of unknown function (DUF1310) 3.4 2.5 1
EST1_DNA_bind Est1 DNA/RNA binding domain 3.1 2.7 1
ApbA Ketopantoate reductase PanE/ApbA 2.4 2.8 1
Alum_res Aluminium resistance protein 0.4 3.2 1
Tautomerase Tautomerase enzyme 4.0 3.4 2
Big_2 Bacterial Ig-like domain (group 2) 3.0 3.4 1
Peptidase_S66 LD-carboxypeptidase 1.3 3.9 1
B3 B3 DNA binding domain 2.3 4.1 1
Antig_Caf1 Caf1 Capsule antigen 1.1 4.3 1
Gag_p17 gag gene protein p17 (matrix protein) 1.9 4.7 1
NUC201 NUC201 domain 1.5 5.4 1
AlphaC_N Alpha C protein N terminal 0.8 5.8 1
EF_TS Elongation factor TS 0.3 5.9 1
Amidohydro_3 Amidohydrolase family 0.2 6.6 1
Baculo_p74 Baculoviridae p74 conserved region 0.7 6.6 1
DUF383 Domain of unknown function (DUF383) 1.2 6.7 1
DUF1888 Domain of unknown function (DUF1888) 1.4 6.8 1
MT-A70 MT-A70 0.9 7.3 1
Syd Syd protein 0.8 7.4 1
DUF1982 Domain of unknown function (DUF1982) 2.1 7.4 2
I-set Immunoglobulin I-set domain 2.0 7.6 2
Reovirus_M2 Reovirus major virion structural prot -2.1 7.9 1
Pro_CA Carbonic anhydrase 1.2 8 1
fn3 Fibronectin type III domain 1.9 8.1 3
RVP_2 Retroviral aspartyl protease 0.5 8.8 1
Planc_extracel Planctomycete extracellular 1.8 8.8 1
Mannitol_dh_C Mannitol dehydrogenase C-terminal dom 0.6 9.4 2
DUF2234 Uncharacterized protein conserved in 0.8 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Planc_extracel 1/1 2 29 .. 1 28 [] 1.8 8.8
Syd 1/1 19 27 .. 170 178 .] 0.8 7.4
EF_TS 1/1 36 49 .. 1 14 [. 0.3 5.9
DUF383 1/1 42 54 .. 207 219 .] 1.2 6.7
MT-A70 1/1 60 74 .. 31 45 .. 0.9 7.3
EST1_DNA_bind 1/1 207 219 .. 1 13 [. 3.1 2.7
ApbA 1/1 328 335 .. 1 8 [. 2.4 2.8
Chlam_PMP 1/3 395 410 .. 3 19 .] 4.8 5.2
Chlam_PMP 2/3 417 434 .. 1 19 [] 10.4 0.15
Fil_haemagg 1/1 417 494 .. 7 75 .] 4.7 1.2
Chlam_PMP 3/3 443 461 .. 1 19 [] 17.1 0.0023
RNase_PH 1/1 545 567 .. 131 156 .] 3.5 1.6
DUF2281 1/1 560 579 .. 60 80 .] 5.0 1.1
Tir_receptor_C 1/1 609 633 .. 204 227 .] 2.2 1.9
NUC201 1/1 686 701 .. 1 16 [. 1.5 5.4
Flagellin_IN 1/4 755 783 .. 1 31 [. 1.2 18
B3 1/1 789 846 .. 1 68 [. 2.3 4.1
PPC 1/4 826 909 .. 1 85 [] 0.2 25
IpaD 1/2 851 880 .. 1 30 [. 0.7 1.4
Sialidase 1/3 856 875 .. 1 22 [. 1.3 5.4
Reovirus_M2 1/1 886 895 .. 1 10 [. -2.1 7.9
Big_2 1/1 907 952 .. 1 48 [. 3.0 3.4
MNNL 1/2 912 922 .. 73 83 .] 4.4 1.7
Flagellin_IN 2/4 918 945 .. 1 31 [. 0.3 31
Peptidase_S66 1/1 918 930 .. 306 318 .] 1.3 3.9
HipA_C 1/1 989 995 .. 83 89 .] 3.4 1.3
Reg_prop 1/1 1005 1028 .. 1 23 [] 7.6 1.5
Rib_5-P_isom_A 1/1 1010 1022 .. 175 187 .] 3.0 1.8
Amidohydro_3 1/1 1122 1131 .. 524 533 .] 0.2 6.6
MNNL 2/2 1335 1345 .. 73 83 .] 1.7 9.7
Cadherin 1/1 1340 1389 .. 1 54 [. 6.6 0.35
ABC2_membrane 1/1 1369 1381 .. 228 240 .] 2.2 2.2
AlphaC_N 1/1 1394 1403 .. 1 10 [. 0.8 5.8
CRPA 1/1 1397 1406 .. 152 161 .] 4.5 0.63
Tautomerase 1/2 1527 1549 .. 3 26 .. 2.0 12
fn3 1/3 1583 1601 .. 63 84 .] 1.0 15
DUF1888 1/1 1662 1682 .. 1 22 [. 1.4 6.8
Tautomerase 2/2 1683 1705 .. 3 26 .. 2.0 12
fn3 2/3 1746 1757 .. 70 84 .] 0.1 26
PPC 2/4 1828 1909 .. 1 85 [] 1.5 10
IpaD 2/2 1854 1882 .. 1 30 [. 0.3 2
Sialidase 2/3 1858 1877 .. 1 22 [. 1.3 5.4
Mannitol_dh_C 1/2 1885 1903 .. 1 19 [. 0.3 11
DUF1982 1/2 1895 1914 .. 1 28 [. 1.1 15
Flagellin_IN 3/4 1915 1943 .. 1 31 [. 0.2 33
Gag_p17 1/1 1929 1937 .. 1 9 [. 1.9 4.7
Antig_Caf1 1/1 1937 1959 .. 114 136 .] 1.1 4.3
I-set 1/2 1944 1956 .. 84 96 .] 0.6 19
PPC 3/4 1986 2067 .. 1 85 [] 1.6 9.7
Phage_coat 1/2 1989 2004 .. 1 16 [. 1.2 2.1
DUF1310 1/1 2004 2017 .. 112 125 .] 3.4 2.5
Aerolysin 1/1 2007 2042 .. 375 419 .] 3.5 0.75
RVP_2 1/1 2033 2044 .. 124 135 .] 0.5 8.8
Mannitol_dh_C 2/2 2043 2061 .. 1 19 [. 0.3 11
DUF1982 2/2 2053 2072 .. 1 28 [. 1.1 15
Flagellin_IN 4/4 2073 2101 .. 1 31 [. 4.1 2.8
I-set 2/2 2102 2114 .. 84 96 .] 1.3 12
PPC 4/4 2144 2175 .. 1 38 [. 4.0 1.9
Phage_coat 2/2 2147 2162 .. 1 16 [. 1.2 2.1
Sialidase 3/3 2174 2192 .. 1 21 [. 0.2 11
fn3 3/3 2213 2231 .. 63 84 .] 0.8 17
HD-ZIP_N 1/1 2267 2281 .. 142 157 .] 2.1 1.8
Pro_CA 1/1 2293 2303 .. 193 203 .] 1.2 8
DUF2234 1/1 2411 2429 .. 133 155 .] 0.8 9.7
Alum_res 1/1 2419 2431 .. 396 408 .] 0.4 3.2
Sporozoite_P67 1/1 2425 2443 .. 864 882 .. 1.5 0.31
Baculo_p74 1/1 2524 2537 .. 1 14 [. 0.7 6.6
Alignments of top-scoring domains:
Planc_extracel: domain 1 of 1, from 2 to 29: score 1.8, E = 8.8
*->rrrrrrrrrsrrrrRRLrlEsLEsRrLL<-*
r+ ++++ ++ +E+LE R +L
gi|8909335 2 LRSTKSKKAQVQQQESYFFEQLEPRVML 29
Syd: domain 1 of 1, from 19 to 27: score 0.8, E = 7.4
*->FLaaLePlv<-*
F ++LeP+v
gi|8909335 19 FFEQLEPRV 27
EF_TS: domain 1 of 1, from 36 to 49: score 0.3, E = 5.9
*->AAEGlvavyvdgdg<-*
AAEGlv + ++d+
gi|8909335 36 AAEGLVDTEREDDS 49
DUF383: domain 1 of 1, from 42 to 54: score 1.2, E = 6.7
*->eKeRdpDpdIrkq<-*
+ eR+ D+d+ k+
gi|8909335 42 DTEREDDSDLLKT 54
MT-A70: domain 1 of 1, from 60 to 74: score 0.9, E = 7.3
*->nddeLlaLpipelad<-*
n d+L+aLpip+++d
gi|8909335 60 NLDQLDALPIPVILD 74
EST1_DNA_bind: domain 1 of 1, from 207 to 219: score 3.1, E = 2.7
*->nrkFcqslasLlN<-*
++F+qslasL+N
gi|8909335 207 GVSFIQSLASLTN 219
ApbA: domain 1 of 1, from 328 to 335: score 2.4, E = 2.8
CS EEEES-SH
*->IaIlGaGA<-*
I+I+GaGA
gi|8909335 328 IHIVGAGA 335
Chlam_PMP: domain 1 of 3, from 395 to 410: score 4.8, E = 5.2
*->tFsgNsaaggGGAiyas<-*
+Fs+++a +GG+iy+
gi|8909335 395 IFSSITA-TNGGGIYNL 410
Chlam_PMP: domain 2 of 3, from 417 to 434: score 10.4, E = 0.15
*->ditFsgNsaaggGGAiyas<-*
+t+ +Nsa GG+iy+
gi|8909335 417 RVTIAENSA-QLGGGIYND 434
Fil_haemagg: domain 1 of 1, from 417 to 494: score 4.7, E = 1.2
CS EEETT TT--EE-SEEEEEE-STT-EEEE-S-EEESSE......
*->tlnaa....alggldlnnggtlsagggltltaagllnnggtliaggd
++++a ++ +lgg+ n +g+ + ++t++++++ +gg+ ++gd
gi|8909335 417 RVTIAensaQLGGGIYNDTGATMTLINVTISGNSASSDGGGVYNKGD 463
CS ............ .EEEEESS-EEEEE
lllaagalrngg.....dltltaaGdLdnsg<-*
+l++ +++ ++ ++ ++ +aG++ +s+
gi|8909335 464 ADLTNVTIAKNDasnaaGGFFRSAGTVNLSN 494
Chlam_PMP: domain 3 of 3, from 443 to 461: score 17.1, E = 0.0023
*->ditFsgNsaaggGGAiyas<-*
++t+sgNsa+++GG++y++
gi|8909335 443 NVTISGNSASSDGGGVYNK 461
RNase_PH: domain 1 of 1, from 545 to 567: score 3.5, E = 1.6
CS ETSSTH..HHHHHHHHHHHHHHCCHH
*->dsDGstslrdaaitAaslALadAgiP<-*
d+ G+t r++ai+A s AL+dAg
gi|8909335 545 DYGGQT--RTHAILAGS-ALIDAGTD 567
DUF2281: domain 1 of 1, from 560 to 579: score 5.0, E = 1.1
*->gliLdlkddfddPLElQheym<-*
+li d ++d+++P E+Q e +
gi|8909335 560 ALI-DAGTDTGAPTEDQREIT 579
Tir_receptor_C: domain 1 of 1, from 609 to 633: score 2.2, E = 1.9
*->TGggeSAvN.staNaaptPGpeRFV<-*
T gg Av s+aNa + G + F+
gi|8909335 609 TEGGSAAVAfSAANASTVEGTQSFI 633
NUC201: domain 1 of 1, from 686 to 701: score 1.5, E = 5.4
*->arGeqllaAlsaLlsl<-*
+G + aA+ + +++
gi|8909335 686 TGGSANNAAMNGIINS 701
Flagellin_IN: domain 1 of 4, from 755 to 783: score 1.2, E = 18
*->tltinggggkensvadgvdislsagdslaal<-*
tl+++gg+++++ +g++ s+ +g+s++++
gi|8909335 755 TLSLTGGSTTFT--EGGTAASIFSGSSADTI 783
B3: domain 1 of 1, from 789 to 846: score 2.3, E = 4.1
CS EEEEE--HH.HHTT-EE--HHHH..TT------S....EEEEE-SSS
*->fFvktltpsdlsklrlylppkfaaenglpklgeggvsqeitlldesG
f ++tlt s+ls ++ + l+ +++ i l++ sG
gi|8909335 789 FSELTLTVSNLSDGTN---------EVLNI-DGS----SIALVNGSG 821
CS -EEEEEEE...E- S-EEE-TT
......ksWevklryrrss.grmyltkG<-*
++ +++ s++v l+ ++g++ +t+G
gi|8909335 822 tsatnsLSYTVSLS---AGtGTLTFTGG 846
PPC: domain 1 of 4, from 826 to 909: score 0.2, E = 25
CS -EEEEEEEESTTCE EEEEEECTSSS...S...CCEEEEEEECCCSE
*->dvdvysFtvpaggt.lsisldggsslrslsgnGdadtlLywlldgdp
+ +y+++++ag+ +l+ + +g+ s+ ++dtlL +++ ++
gi|8909335 826 NSLSYTVSLSAGTGtLTFT-GGSVSAA------NLDTLLNGISYQNN 865
CS SSSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
...........slsaydaystTrdvdnggsdelisftapeaGtYyirVyg
+++++ +++ +l++ ++++ ++++s ++t+++a t ++ +
gi|8909335 866 sqdptagnrvvTLTSLQDSG-----GTANS-GVNTITPNTATTVNVQADN 909
CS
<-*
gi|8909335 - -
IpaD: domain 1 of 2, from 851 to 880: score 0.7, E = 1.4
*->qNisaltnsiivaefsqtnsasesvETvvv<-*
N +l n i+ sq ++a+ v T +
gi|8909335 851 ANLDTLLNGISYQNNSQDPTAGNRVVTLTS 880
Sialidase: domain 1 of 3, from 856 to 875: score 1.3, E = 5.4
CS --SSEEEE..EEEEEE-TTT-E
*->iptvieyelinnnidisngqgy<-*
+ ++i+y+ nn+ d ++g+++
gi|8909335 856 LLNGISYQ--NNSQDPTAGNRV 875
Reovirus_M2: domain 1 of 1, from 886 to 895: score -2.1, E = 7.9
CS XXXXXXXXBX
*->GtvssiVnTi<-*
Gt+ s VnTi
gi|8909335 886 GTANSGVNTI 895
Big_2: domain 1 of 1, from 907 to 952: score 3.0, E = 3.4
CS EEEEEEETTT.TEEES--SEEETTSEEEEEEESTT....SBEEEEES
*->avtsvtvsptgntaslakGatlqlkatvtpsdasnkdiTkkvtWsSs
a + + v ++ n+++l +Gat++l + +++ ++++ ++ t+++s
gi|8909335 907 ADNDIPVLGN-NSLTLSQGATVTLDSSILSASDVDNTD-SALTFTVS 951
CS -
n<-*
n
gi|8909335 952 N 952
MNNL: domain 1 of 2, from 912 to 922: score 4.4, E = 1.7
*->PVLGgNsfslt<-*
PVLG+Ns +l+
gi|8909335 912 PVLGNNSLTLS 922
Flagellin_IN: domain 2 of 4, from 918 to 945: score 0.3, E = 31
*->tltinggggkensvadgvdislsagdslaal<-*
+lt+++g +++ +d+ ++s+s++d+++ +
gi|8909335 918 SLTLSQGATVT---LDSSILSASDVDNTDSA 945
Peptidase_S66: domain 1 of 1, from 918 to 930: score 1.3, E = 3.9
CS ---EEETSEEEEE
*->nltlPiGvkirid<-*
+ltl +G+++++d
gi|8909335 918 SLTLSQGATVTLD 930
HipA_C: domain 1 of 1, from 989 to 995: score 3.4, E = 1.3
*->rLaPaYD<-*
+L+PaYD
gi|8909335 989 ELTPAYD 995
Reg_prop: domain 1 of 1, from 1005 to 1028: score 7.6, E = 1.5
*->slpgg.vtfalledsdGrlWigt.n<-*
+++ + a+ +sdG++W++t++
gi|8909335 1005 TVATAaSV-AFTGTSDGVVWLSTdG 1028
Rib_5-P_isom_A: domain 1 of 1, from 1010 to 1022: score 3.0, E = 1.8
CS -SEEEEEETTCEE
*->AdkvivGtkdGvk<-*
A++++ Gt+dGv+
gi|8909335 1010 ASVAFTGTSDGVV 1022
Amidohydro_3: domain 1 of 1, from 1122 to 1131: score 0.2, E = 6.6
*->evGkdADlvi<-*
++G++ADl i
gi|8909335 1122 GAGAPADLNI 1131
MNNL: domain 2 of 2, from 1335 to 1345: score 1.7, E = 9.7
*->PVLGgNsfslt<-*
PVL +Nsf+l
gi|8909335 1335 PVLATNSFTLN 1345
Cadherin: domain 1 of 1, from 1340 to 1389: score 6.6, E = 0.35
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s+++ E+a + +++ ++AtD D p ++++Y+i++ gg F
gi|8909335 1340 NSFTLNEGATTTITPTFLNATDVD---SPDAGLTYAISSLV-GGEFQ 1382
CS B-TTSSE
IdpdtGd<-*
++++ G+
gi|8909335 1383 LTSNLGV 1389
ABC2_membrane: domain 1 of 1, from 1369 to 1381: score 2.2, E = 2.2
*->ltYaiealranef<-*
ltYai++l+++ef
gi|8909335 1369 LTYAISSLVGGEF 1381
AlphaC_N: domain 1 of 1, from 1394 to 1403: score 0.8, E = 5.8
CS XXXXXXXXXX
*->vtqgqlNife<-*
+tqgq+N +e
gi|8909335 1394 FTQGQINNSE 1403
CRPA: domain 1 of 1, from 1397 to 1406: score 4.5, E = 0.63
*->GqlNnSNKIF<-*
Gq+NnS IF
gi|8909335 1397 GQINNSEVIF 1406
Tautomerase: domain 1 of 2, from 1527 to 1549: score 2.0, E = 12
CS EEEEEETT-..HHHHHHHHHHHHH
*->vnIklleGrDlsdeqKaaLiervT<-*
++I l++G l+++ ++aL e+vT
gi|8909335 1527 ATITLTGGS-LNAASLEALLEGVT 1549
fn3: domain 1 of 3, from 1583 to 1601: score 1.0, E = 15
CS --TT-EEEEEEEEEETTE-EBE
*->LkPgteYtvrVqAvnggGGpeS<-*
L+P+++ tv+VqAvn++ ++
gi|8909335 1583 LNPNVTSTVTVQAVNDA---PT 1601
DUF1888: domain 1 of 1, from 1662 to 1682: score 1.4, E = 6.8
*->MsntqgtaqfikVTVtLeAnGe<-*
n g+++++ +V+L +G+
gi|8909335 1662 LVNGSGSTTNFSYNVSLS-SGT 1682
Tautomerase: domain 2 of 2, from 1683 to 1705: score 2.0, E = 12
CS EEEEEETT-..HHHHHHHHHHHHH
*->vnIklleGrDlsdeqKaaLiervT<-*
++I l++G l+++ ++aL e+vT
gi|8909335 1683 ATITLTGGS-LNAASLEALLEGVT 1705
fn3: domain 2 of 3, from 1746 to 1757: score 0.1, E = 26
CS EEEEEEEETTE-EBE
*->tvrVqAvnggGGpeS<-*
tv+VqAvn++ ++
gi|8909335 1746 TVTVQAVNDA---PT 1757
PPC: domain 2 of 4, from 1828 to 1909: score 1.5, E = 10
CS -EEEEEEEESTTCE EEEEEECTSSS...S...CCEEEEEEECCCSE
*->dvdvysFtvpaggt.lsisldggsslrslsgnGdadtlLywlldgdp
+ +y+++v+ag+ +l+ + +g+ s+ G++dtlL +++ ++
gi|8909335 1828 NSLSYTVSVSAGTAtLTFT-GGSVSA------GNLDTLLNGISYQNN 1867
CS SSSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
...........slsaydaystTrdvdnggsdelisftapeaGtYyirVyg
+++++ +++ +l++ ++++ ++++s ++t+++a t ++V +
gi|8909335 1868 sqdptagnrvvTLTSLQDSG-----GTANS-GVDTITPNTATT--VTVQS 1909
CS
<-*
gi|8909335 - -
IpaD: domain 2 of 2, from 1854 to 1882: score 0.3, E = 2
*->qNisaltnsiivaefsqtnsasesvETvvv<-*
N +l n i+ sq ++a+ v T +
gi|8909335 1854 -NLDTLLNGISYQNNSQDPTAGNRVVTLTS 1882
Sialidase: domain 2 of 3, from 1858 to 1877: score 1.3, E = 5.4
CS --SSEEEE..EEEEEE-TTT-E
*->iptvieyelinnnidisngqgy<-*
+ ++i+y+ nn+ d ++g+++
gi|8909335 1858 LLNGISYQ--NNSQDPTAGNRV 1877
Mannitol_dh_C: domain 1 of 2, from 1885 to 1903: score 0.3, E = 11
CS HH-----EEEE-------H
*->envgFPntmVDRIVPattd<-*
++ g n+ VD+I+P+t++
gi|8909335 1885 DSGGTANSGVDTITPNTAT 1903
DUF1982: domain 1 of 2, from 1895 to 1914: score 1.1, E = 15
*->Deiepakwaalaallaaakksgslskap<-*
D+i+p++++ + ++ s+++ap
gi|8909335 1895 DTITPNTATTVTVQ--------SVNDAP 1914
Flagellin_IN: domain 3 of 4, from 1915 to 1943: score 0.2, E = 33
*->tltinggggkensvadgvdislsagdslaal<-*
tl+++gg+++++ +g + s+ +g+s+a++
gi|8909335 1915 TLSLTGGSTTFT--EGGAAASVFSGSSAATI 1943
Gag_p17: domain 1 of 1, from 1929 to 1937: score 1.9, E = 4.7
*->GAraSvLsg<-*
GA+aSv sg
gi|8909335 1929 GAAASVFSG 1937
Antig_Caf1: domain 1 of 1, from 1937 to 1959: score 1.1, E = 4.3
CS EESSS---SEEEEEEEEEEEE--
*->GsKGGKLAAGKYtDAvtvtvsnq<-*
Gs + AG+ A t tvsn
gi|8909335 1937 GSSAATIEAGQTFSALTLTVSNL 1959
I-set: domain 1 of 2, from 1944 to 1956: score 0.6, E = 19
CS TTEEEEEEEEEEE
*->saGeaeasaeLtV<-*
+aG+ + +LtV
gi|8909335 1944 EAGQTFSALTLTV 1956
PPC: domain 3 of 4, from 1986 to 2067: score 1.6, E = 9.7
CS -EEEEEEEESTTCE EEEEEECTSSS...S...CCEEEEEEECCCSE
*->dvdvysFtvpaggt.lsisldggsslrslsgnGdadtlLywlldgdp
+ +y+++++ag+ +l+ + +g+ s+ ++dtlL +++ ++
gi|8909335 1986 NSLSYTVSLSAGTAtLTFT-GGSVSSA------NLDTLLNGISYQNN 2025
CS SSSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
...........slsaydaystTrdvdnggsdelisftapeaGtYyirVyg
++++++++++ +l++ ++++ ++++s ++t+++a t ++V +
gi|8909335 2026 sqdpttgnrtvTLTSLQDSG-----GTANS-GVDTITPNTATT--VTVQS 2067
CS
<-*
gi|8909335 - -
Phage_coat: domain 1 of 2, from 1989 to 2004: score 1.2, E = 2.1
CS --EEEEEETTEEEEEE
*->sKtivLsvGEAtRtLt<-*
s t+ Ls G At t t
gi|8909335 1989 SYTVSLSAGTATLTFT 2004
DUF1310: domain 1 of 1, from 2004 to 2017: score 3.4, E = 2.5
*->ggGssiSpkLtkLL<-*
+gGs+ S++L+ LL
gi|8909335 2004 TGGSVSSANLDTLL 2017
Aerolysin: domain 1 of 1, from 2007 to 2042: score 3.5, E = 0.75
*->SvdslganlqriGDievkvalrieelsyqdvPGfrnksltiepve<-
Sv+s++ +++ ++ +++s qd P+ +n + t+++ +
gi|8909335 2007 SVSSANLDTL-------LNGISYQNNS-QD-PTTGNRTVTLTSLQ 2042
*
gi|8909335 - -
RVP_2: domain 1 of 1, from 2033 to 2044: score 0.5, E = 8.8
*->nRtvtLtspkGe<-*
nRtvtLts +
gi|8909335 2033 NRTVTLTSLQDS 2044
Mannitol_dh_C: domain 2 of 2, from 2043 to 2061: score 0.3, E = 11
CS HH-----EEEE-------H
*->envgFPntmVDRIVPattd<-*
++ g n+ VD+I+P+t++
gi|8909335 2043 DSGGTANSGVDTITPNTAT 2061
DUF1982: domain 2 of 2, from 2053 to 2072: score 1.1, E = 15
*->Deiepakwaalaallaaakksgslskap<-*
D+i+p++++ + ++ s+++ap
gi|8909335 2053 DTITPNTATTVTVQ--------SVNDAP 2072
Flagellin_IN: domain 4 of 4, from 2073 to 2101: score 4.1, E = 2.8
*->tltinggggkensvadgvdislsagdslaal<-*
tl+++gg+++++ +gv+ s+ +g+s++++
gi|8909335 2073 TLSLTGGSTTFT--EGGVAASIFSGSSADTI 2101
I-set: domain 2 of 2, from 2102 to 2114: score 1.3, E = 12
CS TTEEEEEEEEEEE
*->saGeaeasaeLtV<-*
++G+ +s +LtV
gi|8909335 2102 ESGQTFSSLTLTV 2114
PPC: domain 4 of 4, from 2144 to 2175: score 4.0, E = 1.9
CS -EEEEEEEESTTCE EEEEEECTSSS...S...CCEEEE
*->dvdvysFtvpaggt.lsisldggsslrslsgnGdadtlL<-*
+ +y+++++ag+ +l+ + +g+ s+ G++dtlL
gi|8909335 2144 NSLSYTVSLSAGTAtLTFT-GGSVSA------GNLDTLL 2175
Phage_coat: domain 2 of 2, from 2147 to 2162: score 1.2, E = 2.1
CS --EEEEEETTEEEEEE
*->sKtivLsvGEAtRtLt<-*
s t+ Ls G At t t
gi|8909335 2147 SYTVSLSAGTATLTFT 2162
Sialidase: domain 3 of 3, from 2174 to 2192: score 0.2, E = 11
CS --SSEEEE..EEEEEE-TTT-
*->iptvieyelinnnidisngqg<-*
+ ++i+y+ nn+ d ++g++
gi|8909335 2174 LLNGISYQ--NNSQDPTAGNR 2192
fn3: domain 3 of 3, from 2213 to 2231: score 0.8, E = 17
CS --TT-EEEEEEEEEETTE-EBE
*->LkPgteYtvrVqAvnggGGpeS<-*
L+P+++ tv+VqAvn+ +S
gi|8909335 2213 LNPNVTSTVTVQAVNDP---PS 2231
HD-ZIP_N: domain 1 of 1, from 2267 to 2281: score 2.1, E = 1.8
*->TvSStvSGKRSereee<-*
TvSS vSG+ e + +
gi|8909335 2267 TVSS-VSGGQFENNGA 2281
Pro_CA: domain 1 of 1, from 2293 to 2303: score 1.2, E = 8
CS ETTTTEEEEEE
*->dietGevevld<-*
di tG+++++d
gi|8909335 2293 DIGTGSIDFVD 2303
DUF2234: domain 1 of 1, from 2411 to 2429: score 0.8, E = 9.7
*->lsredlHEiGarIrrAviKalga<-*
l++ d+ ++++ Av+ a+ a
gi|8909335 2411 LPETDV----NKVKLAVAEAVSA 2429
Alum_res: domain 1 of 1, from 2419 to 2431: score 0.4, E = 3.2
*->VKiAvlaAldall<-*
VK+Av +A++a+
gi|8909335 2419 VKLAVAEAVSAVS 2431
Sporozoite_P67: domain 1 of 1, from 2425 to 2443: score 1.5, E = 0.31
*->ElVKDvSeeevGlGDLSDP<-*
E V vSe vG GDLSDP
gi|8909335 2425 EAVSAVSELRVGWGDLSDP 2443
Baculo_p74: domain 1 of 1, from 2524 to 2537: score 0.7, E = 6.6
*->rndsddeLEdIItq<-*
+ +++++LEd++++
gi|8909335 2524 EVEDEESLEDMVSD 2537
//