hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 90578280.fa
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Query sequence: gi|90578280|ref|ZP_01234091.1|
Accession: [none]
Description: hypothetical protein VAS14_14554 [Vibrio angustum S14]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cna_B Cna protein B-type domain 15.3 0.00036 1
TSP_3 Thrombospondin type 3 repeat 17.9 0.00036 6
Dockerin_1 Dockerin type I repeat 9.5 0.089 4
CBM_4_9 Carbohydrate binding domain 7.0 0.16 1
UCR_TM Ubiquinol cytochrome reductase transm 6.4 0.36 1
Binary_toxB Clostridial binary toxin B/anthrax to 3.7 0.38 2
Vac_Fusion Chordopoxvirus fusion protein 3.1 0.44 1
DUF302 Domain of unknown function DUF302 6.0 0.73 1
Ku_PK_bind Ku C terminal domain like 4.0 0.82 1
MAP1B_neuraxin Neuraxin and MAP1B repeat 5.4 0.89 3
LRR_1 Leucine Rich Repeat 6.2 1 1
PilS PilS N terminal 3.7 1 2
YL1_C YL1 nuclear protein C-terminal domain 6.7 1.1 1
SurA_N SurA N-terminal domain 3.7 1.1 1
CRAM_rpt Cysteine-rich, acidic integral membra 3.2 1.1 1
DUF836 Glutaredoxin-like domain (DUF836) 4.4 1.4 1
UPF0300 Uncharacterised protein family (UPF03 3.6 1.5 1
Herpes_ORF11 Herpesvirus dUTPase protein 1.9 1.6 1
PPC Bacterial pre-peptidase C-terminal do 4.2 1.6 1
NLE NLE (NUC135) domain 4.6 1.7 1
Sipho_tail Siphovirus tail component protein 0.9 1.7 1
DicB DicB protein 2.8 1.7 1
MIP Major intrinsic protein 1.9 1.7 1
DUF1727 Domain of unknown function (DUF1727) 1.0 2 1
efhand EF hand 5.6 2.3 2
Fasciclin Fasciclin domain 2.3 2.9 1
DUF1558 Protein of unknown function (DUF1558) 3.0 2.9 1
DUF823 Salmonella repeat of unknown function 1.1 3.1 1
Plasmodium_HRP Plasmodium histidine-rich protein (HR 1.1 3.2 1
PIR Yeast PIR protein repeat 4.5 3.2 1
DUF1683 Protein of unknown function (DUF1683) 2.6 3.3 1
PC_rep Proteasome/cyclosome repeat 3.8 3.3 2
BPL_LipA_LipB Biotin/lipoate A/B protein ligase fam 2.8 3.3 1
Peptidase_M4_C Thermolysin metallopeptidase, alpha-h 1.5 3.4 1
PKD PKD domain 2.4 3.5 1
tRNA-synt_1d tRNA synthetases class I (R) 0.9 3.5 1
RanGAP1_C RanGAP1 C-terminal domain 1.2 3.7 1
DUF1968 Domain of unknown function (DUF1968) 1.8 3.8 1
DUF1989 Domain of unknown function (DUF1989) 1.4 3.8 1
Lant_dehyd_C Lantibiotic dehydratase, C terminus 0.6 4.1 1
RHS_repeat RHS Repeat 3.4 4.1 1
Clat_adaptor_s Clathrin adaptor complex small chain 2.3 4.2 1
ExoD Exopolysaccharide synthesis, ExoD 2.3 4.4 1
Pox_A30L_A26L Orthopoxvirus A26L/A30L protein 0.4 4.5 1
PD40 WD40-like Beta Propeller Repeat 2.5 4.7 1
Stap_Strp_toxin Staphylococcal/Streptococcal toxin, O 2.5 4.8 1
WD40 WD domain, G-beta repeat 2.6 4.8 2
TrwC TrwC relaxase -0.1 4.9 1
DUF328 Protein of unknown function (DUF328) 1.3 4.9 1
OstA_C Organic solvent tolerance protein 0.4 4.9 1
DUF2098 Uncharacterized protein conserved in 2.9 5.2 1
ClpB_D2-small C-terminal, D2-small domain, of ClpB 1.6 5.3 1
TraG_N TraG-like protein, N-terminal region 0.8 5.3 1
Adhesin_Dr Dr-family adhesin 2.8 5.3 1
PPP5 PPP5 1.4 5.5 1
YMF19 Plant ATP synthase F0 2.3 5.6 1
DUF1923 Domain of unknown function (DUF1923) 1.1 5.7 1
MNNL N terminus of Notch ligand 2.5 5.7 1
Phage_sheath_1 Phage tail sheath protein -0.9 6 1
Pterin_4a Pterin 4 alpha carbinolamine dehydrat 1.8 6.4 1
Staphylokinase Staphylokinase/Streptokinase family 1.9 6.5 1
Pox_IFNR Poxvirus interferon gamma receptor -0.4 6.5 1
YfkB YfkB-like domain -0.3 6.5 1
A2M Alpha-2-macroglobulin family 1.1 6.6 1
ig Immunoglobulin domain 2.2 6.6 1
Nup133_N Nup133 N terminal like -0.6 6.6 1
Reovirus_L2 Reovirus core-spike protein lambda-2 -1.8 6.8 1
Big_2 Bacterial Ig-like domain (group 2) 1.9 7 1
Arteri_Gl Arterivirus GL envelope glycoprotein 0.9 7.1 1
CT20 CT20 family 0.7 7.1 1
DNA_pol_viral_C DNA polymerase (viral) C-terminal dom -1.9 7.2 1
Methyltransf_6 Demethylmenaquinone methyltransferase 0.8 7.2 1
HisG_C HisG, C-terminal domain 2.1 7.3 1
Chal_sti_synt_N Chalcone and stilbene synthases, N-te -0.4 7.3 1
CoA_trans Coenzyme A transferase 0.8 7.4 1
DUF1638 Protein of unknown function (DUF1638) 1.4 7.5 1
DUF297 TM1410 hypothetical-related protein 0.2 7.6 1
Autotransporter Autotransporter beta-domain 0.8 7.6 1
RE_Bpu10I Bpu10I restriction endonuclease 0.0 7.9 1
DUF1833 Domain of unknown function (DUF1833) 1.3 8 1
DUF2202 Uncharacterized protein conserved in 1.1 8 1
DUF1512 Protein of unknown function (DUF1512) -1.6 8.2 1
GlcNAc_2-epim N-acylglucosamine 2-epimerase (GlcNAc -0.8 8.3 1
Osmo_CC Osmosensory transporter coiled coil 1.7 8.3 1
Bap31 B-cell receptor-associated protein 31 0.2 8.6 1
Harpin Harpin protein (HrpN) -1.0 8.8 1
DUF1450 Protein of unknown function (DUF1450) 1.0 8.8 1
DUF1897 Domain of unknown function (DUF1897) 2.2 9.3 1
PTS_EIIB phosphotransferase system, EIIB 2.4 9.3 1
Filamin Filamin/ABP280 repeat 1.4 9.5 1
P68HR P68HR (NUC004) repeat 2.5 9.5 1
COesterase Carboxylesterase -2.1 9.7 1
FAD_binding_3 FAD binding domain -0.8 9.8 1
Germane Sporulation and spore germination 1.5 9.8 1
DUF548 Protein of unknown function (DUF548) -0.2 9.8 1
RNA_lig_T4_1 T4 RNA ligase (RNA_lig_T4_1) 0.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CT20 1/1 26 35 .. 128 137 .] 0.7 7.1
LRR_1 1/1 40 60 .. 1 25 [] 6.2 1
DUF1638 1/1 42 59 .. 137 154 .. 1.4 7.5
PPP5 1/1 72 86 .. 83 97 .] 1.4 5.5
DUF836 1/1 101 131 .. 85 116 .] 4.4 1.4
PC_rep 1/2 133 155 .. 10 38 .] 0.1 42
TrwC 1/1 150 290 .. 282 315 .. -0.1 4.9
Binary_toxB 1/2 198 206 .. 1 9 [. 1.8 1.4
efhand 1/2 198 211 .. 8 21 .. 0.7 48
TSP_3 1/6 199 214 .. 1 15 [] 4.1 4.9
DUF2098 1/1 241 258 .. 88 102 .] 2.9 5.2
Adhesin_Dr 1/1 271 277 .. 140 146 .] 2.8 5.3
CBM_4_9 1/1 345 389 .. 122 172 .] 7.0 0.16
Binary_toxB 2/2 397 409 .. 1 13 [. 1.9 1.3
TSP_3 2/6 398 410 .. 1 15 [] 6.5 0.93
TSP_3 3/6 411 423 .. 1 15 [] 2.6 14
NLE 1/1 421 450 .. 1 32 [. 4.6 1.7
DUF823 1/1 425 431 .. 1 7 [. 1.1 3.1
Dockerin_1 1/4 428 438 .. 1 11 [. 6.3 0.86
Staphylokinase 1/1 431 456 .. 1 26 [. 1.9 6.5
RHS_repeat 1/1 440 454 .. 1 18 [. 3.4 4.1
TSP_3 4/6 456 468 .. 1 15 [] 1.9 23
Pox_IFNR 1/1 583 593 .. 53 63 .. -0.4 6.5
Herpes_ORF11 1/1 591 606 .. 1 16 [. 1.9 1.6
DUF1968 1/1 656 681 .. 65 91 .] 1.8 3.8
Fasciclin 1/1 825 838 .. 132 145 .. 2.3 2.9
Dockerin_1 2/4 855 864 .. 1 10 [. 0.2 66
WD40 1/2 873 921 .. 15 38 .] 1.6 10
YfkB 1/1 888 908 .. 133 153 .] -0.3 6.5
Dockerin_1 3/4 922 927 .. 1 6 [. 0.1 68
A2M 1/1 952 964 .. 67 79 .. 1.1 6.6
Lant_dehyd_C 1/1 969 994 .. 1 26 [. 0.6 4.1
SurA_N 1/1 986 994 .. 129 137 .] 3.7 1.1
Bap31 1/1 1025 1033 .. 208 216 .] 0.2 8.6
CoA_trans 1/1 1080 1100 .. 224 244 .] 0.8 7.4
PD40 1/1 1095 1116 .. 1 19 [. 2.5 4.7
DUF1989 1/1 1156 1168 .. 1 13 [. 1.4 3.8
Reovirus_L2 1/1 1156 1168 .. 1310 1323 .] -1.8 6.8
DUF1897 1/1 1198 1209 .. 1 12 [. 2.2 9.3
DUF1833 1/1 1203 1221 .. 144 162 .] 1.3 8
YMF19 1/1 1251 1290 .. 51 101 .] 2.3 5.6
Arteri_Gl 1/1 1261 1280 .. 1 22 [. 0.9 7.1
efhand 2/2 1290 1310 .. 9 29 .] 4.9 3.5
Pterin_4a 1/1 1393 1407 .. 1 15 [. 1.8 6.4
DUF1727 1/1 1407 1413 .. 110 116 .] 1.0 2
FAD_binding_3 1/1 1413 1447 .. 78 115 .. -0.8 9.8
PKD 1/1 1548 1568 .. 71 92 .] 2.4 3.5
Filamin 1/1 1698 1717 .. 29 55 .. 1.4 9.5
Phage_sheath_1 1/1 1764 1775 .. 685 696 .] -0.9 6
PTS_EIIB 1/1 1764 1775 .. 24 35 .] 2.4 9.3
BPL_LipA_LipB 1/1 1798 1807 .. 147 156 .] 2.8 3.3
ExoD 1/1 1955 1986 .. 1 32 [. 2.3 4.4
Clat_adaptor_s 1/1 1973 1989 .. 148 164 .] 2.3 4.2
PPC 1/1 2042 2102 .. 6 85 .] 4.2 1.6
ig 1/1 2100 2145 .. 19 67 .] 2.2 6.6
Chal_sti_synt_N 1/1 2161 2182 .. 1 22 [. -0.4 7.3
COesterase 1/1 2189 2216 .. 556 591 .] -2.1 9.7
RE_Bpu10I 1/1 2204 2215 .. 212 225 .] 0.0 7.9
OstA_C 1/1 2210 2233 .. 1 26 [. 0.4 4.9
GlcNAc_2-epim 1/1 2238 2259 .. 353 381 .] -0.8 8.3
DUF302 1/1 2241 2254 .. 52 66 .] 6.0 0.73
Harpin 1/1 2248 2270 .. 1 23 [. -1.0 8.8
P68HR 1/1 2269 2298 .. 1 35 [] 2.5 9.5
UCR_TM 1/1 2298 2313 .. 1 18 [. 6.4 0.36
DUF1558 1/1 2340 2362 .. 94 116 .] 3.0 2.9
Peptidase_M4_C 1/1 2366 2375 .. 1 10 [. 1.5 3.4
RanGAP1_C 1/1 2606 2622 .. 169 185 .] 1.2 3.7
DUF548 1/1 2619 2627 .. 230 238 .] -0.2 9.8
TSP_3 5/6 2630 2645 .. 1 15 [] 0.4 65
Dockerin_1 4/4 2631 2644 .. 1 14 [. 2.9 9.4
PilS 1/2 2720 2736 .. 138 161 .] 2.6 2.3
PIR 1/1 2739 2755 .. 1 18 [] 4.5 3.2
MAP1B_neuraxin 1/3 2752 2761 .. 1 10 [. 3.9 2.7
Cna_B 1/1 2813 2857 .. 1 43 [. 15.3 0.00036
Pox_A30L_A26L 1/1 2900 2919 .. 1 21 [. 0.4 4.5
Sipho_tail 1/1 3012 3023 .. 1 12 [. 0.9 1.7
WD40 2/2 3066 3089 .. 14 38 .] 1.0 18
DUF1923 1/1 3159 3173 .. 24 38 .. 1.1 5.7
DUF297 1/1 3213 3230 .. 270 289 .] 0.2 7.6
MAP1B_neuraxin 2/3 3257 3265 .. 1 9 [. 0.1 51
Big_2 1/1 3268 3296 .. 55 90 .] 1.9 7
RNA_lig_T4_1 1/1 3306 3315 .. 287 296 .] 0.6 10
PilS 2/2 3319 3334 .. 146 161 .] 1.2 5.9
tRNA-synt_1d 1/1 3391 3403 .. 363 375 .] 0.9 3.5
Vac_Fusion 1/1 3475 3480 .. 52 57 .] 3.1 0.44
Autotransporter 1/1 3541 3568 .. 143 168 .. 0.8 7.6
YL1_C 1/1 3560 3576 .. 14 30 .] 6.7 1.1
DUF1450 1/1 3613 3621 .. 47 55 .. 1.0 8.8
TSP_3 6/6 3621 3633 .. 1 15 [] 2.4 16
Ku_PK_bind 1/1 3664 3672 .. 1 9 [. 4.0 0.82
MIP 1/1 3664 3673 .. 212 221 .. 1.9 1.7
Germane 1/1 3769 3796 .. 97 124 .] 1.5 9.8
UPF0300 1/1 3801 3816 .. 206 221 .] 3.6 1.5
MNNL 1/1 3855 3861 .. 1 7 [. 2.5 5.7
Plasmodium_HRP 1/1 3950 3962 .. 1 14 [. 1.1 3.2
Osmo_CC 1/1 3973 3993 .. 1 21 [. 1.7 8.3
DUF1683 1/1 3993 4012 .. 64 85 .. 2.6 3.3
DUF328 1/1 4019 4032 .. 240 254 .] 1.3 4.9
DUF1512 1/1 4152 4159 .. 367 374 .] -1.6 8.2
Methyltransf_6 1/1 4188 4194 .. 179 185 .] 0.8 7.2
CRAM_rpt 1/1 4281 4295 .. 9 24 .] 3.2 1.1
Stap_Strp_toxin 1/1 4324 4330 .. 88 94 .] 2.5 4.8
MAP1B_neuraxin 3/3 4365 4374 .. 1 10 [. 1.4 18
DUF2202 1/1 4379 4394 .. 148 163 .] 1.1 8
TraG_N 1/1 4464 4474 .. 1 11 [. 0.8 5.3
Nup133_N 1/1 4502 4543 .. 359 408 .. -0.6 6.6
DicB 1/1 4523 4531 .. 42 50 .. 2.8 1.7
ClpB_D2-small 1/1 4563 4581 .. 75 95 .] 1.6 5.3
PC_rep 2/2 4595 4622 .. 7 38 .] 3.7 3.5
HisG_C 1/1 4604 4613 .. 71 80 .] 2.1 7.3
DNA_pol_viral_C 1/1 4649 4657 .. 92 100 .. -1.9 7.2
Alignments of top-scoring domains:
CT20: domain 1 of 1, from 26 to 35: score 0.7, E = 7.1
*->FsLPesiyge<-*
FsLP ++y+e
gi|9057828 26 FSLPLEDYSE 35
LRR_1: domain 1 of 1, from 40 to 60: score 6.2, E = 1
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
nLe + L + N +++ p +++l
gi|9057828 40 NLERVVLVD-N--HIS-MSPE-FeKL 60
DUF1638: domain 1 of 1, from 42 to 59: score 1.4, E = 7.5
*->krVaKIdTGlsyekdFdk<-*
+rV+ +d+ +s+ ++F+k
gi|9057828 42 ERVVLVDNHISMSPEFEK 59
PPP5: domain 1 of 1, from 72 to 86: score 1.4, E = 5.5
*->dvkelLkklPsLVei<-*
dv++lLk+ + V+i
gi|9057828 72 DVINLLKSDTNVVDI 86
DUF836: domain 1 of 1, from 101 to 131: score 4.4, E = 1.4
CS EEEETT........SEEEESS--HHHHHHHHH
*->VlalvgikkffvlelellswrldeeqLrawLe<-*
V+ l++i+++++ +++ ++l + ++++L+
gi|9057828 101 VITLNNINQYKNK-IKHIGHKLGSDGVINFLA 131
PC_rep: domain 1 of 2, from 133 to 155: score 0.1, E = 42
*->haGsgnedealelLlvpyllsdtsnevra<-*
++G +ne e+++lL+ ++ ++ ++v +
gi|9057828 133 DLG-NNE-EGINLLD-QF---SKLANVTV 155
TrwC: domain 1 of 1, from 150 to 290: score -0.1, E = 4.9
CS EES-E
*->vaNmt..........................................
+aN+t ++++++++ ++++ + + ++++ + ++ ++ + ++
gi|9057828 150 LANVTvlasndktgsslkggdwdlellfgdnsfsftpfpeylqytdi 196
CS
..................................................
+ ++++++ + +++ + ++ +++ ++++ +++ ++++++++ ++++
gi|9057828 197 ldldsdndgildvdegcsvnsadtnlftngsldgtvgqnstpnpwlksns 246
CS ..EECTT EEE-SC-C...SSS..HHHHHH
...................palraDG.kWRsLdsdkqKgvknGfgEely<
++++++++ +++ ++ +++p + DG++W+s++s + Gf+E++y
gi|9057828 247 pdtdngtgctggmsncgttPTISNDGgTWVSIASN-----DSGFSEMIY 290
CS
-*
gi|9057828 - -
Binary_toxB: domain 1 of 2, from 198 to 206: score 1.8, E = 1.4
*->dlDtDnDgI<-*
dlD+DnDgI
gi|9057828 198 DLDSDNDGI 206
efhand: domain 1 of 2, from 198 to 211: score 0.7, E = 48
CS HHTTTSSSEEHHHH
*->efDkDgDGkIsfeE<-*
++D D+DG ++++E
gi|9057828 198 DLDSDNDGILDVDE 211
TSP_3: domain 1 of 6, from 199 to 214: score 4.1, E = 4.9
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
DsDnDg+ d + C
gi|9057828 199 LDSDNDGILDVdEGCS 214
DUF2098: domain 1 of 1, from 241 to 258: score 2.9, E = 5.2
*->dle....dgdngceGaGAG<-*
+l+++++d+dng ++ G G
gi|9057828 241 WLKsnspDTDNGTGCTG-G 258
Adhesin_Dr: domain 1 of 1, from 271 to 277: score 2.8, E = 5.3
CS EEEEEES
*->dGGYWas<-*
dGG+W+s
gi|9057828 271 DGGTWVS 277
CBM_4_9: domain 1 of 1, from 345 to 389: score 7.0, E = 0.16
*->vltgeWtklegtFTipakgtastvvlyvelggtepdsttdfyvDdvs
+l + W++ ++tFT++ ++ +l+++ + +t++ +D +s
gi|9057828 345 TLGTNWQQQTFTFTPS----VTGSYLIIFKNA--NTVNTTLSIDGIS 385
ltdv<-*
+++
gi|9057828 386 ISGG 389
Binary_toxB: domain 2 of 2, from 397 to 409: score 1.9, E = 1.3
*->dlDtDnDgIPDlw<-*
DtDnDg PD +
gi|9057828 397 GQDTDNDGTPDHL 409
TSP_3: domain 2 of 6, from 398 to 410: score 6.5, E = 0.93
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D+DnDg D+ d
gi|9057828 398 QDTDNDGTP--DHLD 410
TSP_3: domain 3 of 6, from 411 to 423: score 2.6, E = 14
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+DsD+D Da +
gi|9057828 411 TDSDGDSCN--DAVE 423
NLE: domain 1 of 1, from 421 to 450: score 4.6, E = 1.7
*->qVqvrFvTkegdellavpdspfaiPvdltrae<-*
V++ F++ +gd + v+++ ++ + ++t +
gi|9057828 421 AVEAGFTDANGDGE--VDGTGYDADGKVTGSD 450
DUF823: domain 1 of 1, from 425 to 431: score 1.1, E = 3.1
*->GvTgAdG<-*
G+T+A+G
gi|9057828 425 GFTDANG 431
Dockerin_1: domain 1 of 4, from 428 to 438: score 6.3, E = 0.86
CS -TT-SS--SHH
*->DvNgDGkVnal<-*
D NgDG V+++
gi|9057828 428 DANGDGEVDGT 438
Staphylokinase: domain 1 of 1, from 431 to 456: score 1.9, E = 6.5
CS CSESCCCSSEEEEEEEEEEETTS-CC
*->npaesvnteykvsfnvkgvDldfnel<-*
++e+++t+y+ +++v+g+D+ ++++
gi|9057828 431 GDGEVDGTGYDADGKVTGSDGYTTPA 456
RHS_repeat: domain 1 of 1, from 440 to 454: score 3.4, E = 4.1
*->YDanGrLtavtdpsgpvg<-*
YDa+G++t+ ++g ++
gi|9057828 440 YDADGKVTG---SDGYTT 454
TSP_3: domain 4 of 6, from 456 to 468: score 1.9, E = 23
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
+D+Dn g g D+ +
gi|9057828 456 ADTDNSGTG--DHLE 468
Pox_IFNR: domain 1 of 1, from 583 to 593: score -0.4, E = 6.5
*->qtmYtnvPEGt<-*
qtmYt vP Gt
gi|9057828 583 QTMYTVVPQGT 593
Herpes_ORF11: domain 1 of 1, from 591 to 606: score 1.9, E = 1.6
*->fdlgaWtvtihpgyft<-*
++ gaW+vt+ +g+f+
gi|9057828 591 QGTGAWRVTWPNGRFL 606
DUF1968: domain 1 of 1, from 656 to 681: score 1.8, E = 3.8
*->NqsdfaCedaFkktNatiPfsdvleps<-*
N + + eda+++t +iP sd + +s
gi|9057828 656 NSTGSGDEDAYQNTSHSIP-SDNFSIS 681
Fasciclin: domain 1 of 1, from 825 to 838: score 2.3, E = 2.9
CS EESSEEEEEESS-T
*->eatNGViHvIDkVL<-*
+a+NG+ H+ID+V+
gi|9057828 825 DANNGAKHIIDSVI 838
Dockerin_1: domain 2 of 4, from 855 to 864: score 0.2, E = 66
CS -TT-SS--SH
*->DvNgDGkVna<-*
Dv+g+ +na
gi|9057828 855 DVDGNSDINA 864
WD40: domain 1 of 2, from 873 to 921: score 1.6, E = 10
CS EEEETT SSSEEEEEETTSEEEE
*->vafspd.........................sgpllasgSrDgtiki
v f+p++++ ++++++ ++ +++ + + s ++++++S+ g + +
gi|9057828 873 VQFNPNnadispssnnilitnhyandvditlSNEVVITASASGFVSL 919
CS EE
Wd<-*
W
gi|9057828 920 WI 921
YfkB: domain 1 of 1, from 888 to 908: score -0.3, E = 6.5
*->nvLVknsYYpdvDFkkrsarl<-*
n+L+ n Y +dvD + + ++
gi|9057828 888 NILITNHYANDVDITLSNEVV 908
Dockerin_1: domain 3 of 4, from 922 to 927: score 0.1, E = 68
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|9057828 922 DLNQDG 927
A2M: domain 1 of 1, from 952 to 964: score 1.1, E = 6.6
*->vdLnLPYSVvRGE<-*
++++LP SVv GE
gi|9057828 952 LSFSLPSSVVHGE 964
Lant_dehyd_C: domain 1 of 1, from 969 to 994: score 0.6, E = 4.1
*->isyaeLvdlLaeefpdapaekvetyL<-*
i+ya+ ++++a+ ++a+ ++ve+yL
gi|9057828 969 IRYATDAAEIASPTGEASDGEVEDYL 994
SurA_N: domain 1 of 1, from 986 to 994: score 3.7, E = 1.1
*->sdqEVdnfL<-*
sd+EV+++L
gi|9057828 986 SDGEVEDYL 994
Bap31: domain 1 of 1, from 1025 to 1033: score 0.2, E = 8.6
*->aegLqkEYd<-*
+egL++EY+
gi|9057828 1025 SEGLTNEYF 1033
CoA_trans: domain 1 of 1, from 1080 to 1100: score 0.8, E = 7.4
CS CSSCGGCEBCCGGHCCEEETT
*->geldpltvhtPGvlvdrvvea<-*
g++ l+ ++P ++ +++v
gi|9057828 1080 GKIAELNTLIPQMYYQDIVTT 1100
PD40: domain 1 of 1, from 1095 to 1116: score 2.5, E = 4.7
*->grltntsg...eggPtwSPDGk<-*
+++++t+g++ +g++wSP++k
gi|9057828 1095 QDIVTTPGqeiTWGFYWSPRRK 1116
DUF1989: domain 1 of 1, from 1156 to 1168: score 1.4, E = 3.8
*->detvpagsgwsfv<-*
++tvpag + ++v
gi|9057828 1156 SYTVPAGQYITRV 1168
Reovirus_L2: domain 1 of 1, from 1156 to 1168: score -1.8, E = 6.8
CS -EEE-SS-EEEEE-
*->TyiVPpGrYtlVvv<-*
+y+VP+G+Y ++v
gi|9057828 1156 SYTVPAGQY-ITRV 1168
DUF1897: domain 1 of 1, from 1198 to 1209: score 2.2, E = 9.3
*->aggaatGqaDYS<-*
+ ++ tG aDYS
gi|9057828 1198 GDAPDTGTADYS 1209
DUF1833: domain 1 of 1, from 1203 to 1221: score 1.3, E = 8
*->sgtAGydDllNqravrlry<-*
+gtA y++ll +++r+ +
gi|9057828 1203 TGTADYSSLLTSNGPRHSF 1221
YMF19: domain 1 of 1, from 1251 to 1290: score 2.3, E = 5.6
*->lsslisevsklqkeqsllpvskdsllansslstsdlsvyNivsnsyl
+s +++ + l+ ++s+ ++s+++l+ n+ +s n y+
gi|9057828 1251 SSNDEDAIAGLGLYDSSASLSFSQLVHNT--TSS---------NAYF 1286
yssl<-*
y ++
gi|9057828 1287 YAWV 1290
Arteri_Gl: domain 1 of 1, from 1261 to 1280: score 0.9, E = 7.1
*->mgslddcvngnsstyqyiYtlT<-*
+g++d+ + ++s +q+++++T
gi|9057828 1261 LGLYDS--SASLSFSQLVHNTT 1280
efhand: domain 2 of 2, from 1290 to 1310: score 4.9, E = 3.5
CS HTTTSSSEEHHHHHHHHHHHH
*->fDkDgDGkIsfeEfkaalkkl<-*
+D D++Gk +++Ef+++ ++
gi|9057828 1290 VDWDKNGKFERDEFIEGGTES 1310
Pterin_4a: domain 1 of 1, from 1393 to 1407: score 1.8, E = 6.4
CS -S--B--HHHHHHHH
*->rakasaLsdeelsek<-*
+ ++aL+++e+se+
gi|9057828 1393 ASSSQALTGAEISEL 1407
DUF1727: domain 1 of 1, from 1407 to 1413: score 1.0, E = 2
*->LaTYTAM<-*
La+YT++
gi|9057828 1407 LANYTSF 1413
FAD_binding_3: domain 1 of 1, from 1413 to 1447: score -0.8, E = 9.8
CS ECCE....TTTTT---EE-SEEEEEECC...HHHTT-T
*->fyntSlaGDElgdirtwgtrpraradldfsvlltsptr<-*
f+++S +GDEl+ +++ g++p r +l+ +l+++++
gi|9057828 1413 FGGVSIVGDELHSTPASGSHPAKRFELE---ILAPGQQ 1447
PKD: domain 1 of 1, from 1548 to 1568: score 2.4, E = 3.5
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
t++Lt++n+ gs + ++ V
gi|9057828 1548 TIQLTAMNDDGSLIEQ-SPIFV 1568
Filamin: domain 1 of 1, from 1698 to 1717: score 1.4, E = 9.5
CS EEEE-S. SSSSSSTT--EEEEEE...S
*->tVdtkdr.AgvpvgGggeLeVtvtlgng<-*
tV ++d +A G+g+L++tv+ g
gi|9057828 1698 TVSCNDFsA-----GSGDLGATVH---G 1717
Phage_sheath_1: domain 1 of 1, from 1764 to 1775: score -0.9, E = 6
*->FrfviTstylvd<-*
+r++iT++ l+d
gi|9057828 1764 LRLRITDDALTD 1775
PTS_EIIB: domain 1 of 1, from 1764 to 1775: score 2.4, E = 9.3
CS EEEEES-GCC--
*->LRlvvkDeskvD<-*
LRl + D++++D
gi|9057828 1764 LRLRITDDALTD 1775
BPL_LipA_LipB: domain 1 of 1, from 1798 to 1807: score 2.8, E = 3.3
CS EEEEEEEEEC
*->hhgtlgvgiN<-*
h++t++v+i+
gi|9057828 1798 HQITINVDID 1807
ExoD: domain 1 of 1, from 1955 to 1986: score 2.3, E = 4.4
*->aslsdlLdrladaeegeiVslgdlldalGeRs<-*
+sd++ rl+ +++ + ++++l +++eRs
gi|9057828 1955 LVISDTVMRLRIVPDDQFTNVDEVLTSVDERS 1986
Clat_adaptor_s: domain 1 of 1, from 1973 to 1989: score 2.3, E = 4.2
CS --HHHHHHHHHHHHHHH
*->tskkeVlkrvalldele<-*
t+++eVl +v+++ +++
gi|9057828 1973 TNVDEVLTSVDERSTAD 1989
PPC: domain 1 of 1, from 2042 to 2102: score 4.2, E = 1.6
CS EEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCS ESSSST
*->sFtvpaggtlsisldggsslrslsgnGdadtlLywlldgd.pslsay
+++v+ g++ls++ dg+++ d d + + +l+++ +s+
gi|9057828 2042 RWSVSDGDDLSVDDDGNGD--------DEDGVTF-ALYKGvVGDSSI 2079
CS TCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
daystTrdvdnggsdelisftapeaGtYyirVyg<-*
+++s ++i + e+G i+V+
gi|9057828 2080 TWNS-----------SSIAVETSEDGYVSIWVDW 2102
ig: domain 1 of 1, from 2100 to 2145: score 2.2, E = 6.6
CS EEEEEETTC-SS-CEEEEEEETSSCCCEEEEEEESSE-GGG-EEEEE
*->vtWfkegkgleessetgtdenrvssqtstslLtisnvteedsGtYtC
v+W+ +g+ +e+ ++++ d+ ++++++ ++ s +GtY+
gi|9057828 2100 VDWQNDGQFTESDDDIVLDWAVDKGSNI---YRMSIPGSVGNGTYWA 2143
CS EE
vv<-*
+v
gi|9057828 2144 RV 2145
Chal_sti_synt_N: domain 1 of 1, from 2161 to 2182: score -0.4, E = 7.3
CS -------------SS-EEEEEE
*->vsveeirkaqraeGpAtiLAiG<-*
++ e++ +q Gp t LA+G
gi|9057828 2161 AATGEVEDSQVTVGPVTCLALG 2182
COesterase: domain 1 of 1, from 2189 to 2216: score -2.1, E = 9.7
CS -BB-TTTSEEEEECSSCEECSC EECCSCC..HHHHH
*->ppytseeqkYyllntllnittk.lreedPrkvkcafw<-*
p ++s+ +l +t++ i+t++ r+++ afw
gi|9057828 2189 PSSNSS----ILGTTNEVIVTPnARMQR-----GAFW 2216
RE_Bpu10I: domain 1 of 1, from 2204 to 2215: score 0.0, E = 7.9
*->wkpkvndrLeRGkl<-*
+ p n+r++RG +
gi|9057828 2204 VTP--NARMQRGAF 2215
OstA_C: domain 1 of 1, from 2210 to 2233: score 0.4, E = 4.9
*->knRgyrfnwkhqfrindnWsGfgvdy<-*
++Rg+ f ++ +f++n+ ++ +++ +
gi|9057828 2210 MQRGA-FWTQNRFDMNSEFR-LRFGI 2233
GlcNAc_2-epim: domain 1 of 1, from 2238 to 2259: score -0.8, E = 8.3
*->ydkldedGeKsvaepvpaGKsdFYHllgA<-*
+d++ +dG+ +v++++p + gA
gi|9057828 2238 RDRYGADGVVFVMHNDPS--GT-----GA 2259
DUF302: domain 1 of 1, from 2241 to 2254: score 6.0, E = 0.73
CS E.EETTEEEEEE--H
*->yededGkvevsyidP<-*
y +dG+v+v+++dP
gi|9057828 2241 Y-GADGVVFVMHNDP 2254
Harpin: domain 1 of 1, from 2248 to 2270: score -1.0, E = 8.8
*->MslntsplgasalqvsllGggnn<-*
+ p g++al+v + G+g++
gi|9057828 2248 FVMHNDPSGTGALGVVGSGLGAQ 2270
P68HR: domain 1 of 1, from 2269 to 2298: score 2.5, E = 9.5
*->sAGkqgGFrtgnprgtYqnGYdsLlkrdfGskaqn<-*
+ ++q +F g + t++nG + d G+++
gi|9057828 2269 AQNIQNSF--GVEFDTFENGARA---NDLGNQSDH 2298
UCR_TM: domain 1 of 1, from 2298 to 2313: score 6.4, E = 0.36
*->AhTDvPevPDfSeLSSVP<-*
hT++ +P S+LSSVP
gi|9057828 2298 -HTAI-MIPSTSNLSSVP 2313
DUF1558: domain 1 of 1, from 2340 to 2362: score 3.0, E = 2.9
*->rhvElvndedkkksLkiaelkre<-*
+ E d+d++ sL+i +++ +
gi|9057828 2340 QNFEYYFDGDLYDSLNIDLVNTY 2362
Peptidase_M4_C: domain 1 of 1, from 2366 to 2375: score 1.5, E = 3.4
CS T---SSCCHH
*->aGLvYegqSG<-*
++L+Y+g+ G
gi|9057828 2366 SNLIYYGMTG 2375
RanGAP1_C: domain 1 of 1, from 2606 to 2622: score 1.2, E = 3.7
CS GGTTHHHHHHHHHHHHH
*->LEscasARhaLlitLyk<-*
LEs+ ARh L + y
gi|9057828 2606 LESNNGARHGLGTNRYD 2622
DUF548: domain 1 of 1, from 2619 to 2627: score -0.2, E = 9.8
*->hRFDIYlpa<-*
+R+D Yl++
gi|9057828 2619 NRYDLYLGT 2627
TSP_3: domain 5 of 6, from 2630 to 2645: score 0.4, E = 65
CS --TT-SSS-.. GGGS
*->eDsDnDgvgdn.DaCd<-*
D+DnDg+ + D
gi|9057828 2630 PDADNDGFVNGvDVST 2645
Dockerin_1: domain 4 of 4, from 2631 to 2644: score 2.9, E = 9.4
CS -TT-SS--SHHHHH
*->DvNgDGkVnalDla<-*
D ++DG Vn+ D +
gi|9057828 2631 DADNDGFVNGVDVS 2644
PilS: domain 1 of 2, from 2720 to 2736: score 2.6, E = 2.3
*->AtmItaCtaDnGrtGtNTltfTsn<-*
At +aC ++ ++Tl f +
gi|9057828 2720 AT--AACVDG-----SATLSFSGF 2736
PIR: domain 1 of 1, from 2739 to 2755: score 4.5, E = 3.2
*->aaavSQItDGQvQatttt<-*
+a+SQIt + + +tt t
gi|9057828 2739 -SATSQITFSRIRITTDT 2755
MAP1B_neuraxin: domain 1 of 3, from 2752 to 2761: score 3.9, E = 2.7
*->TTrtPddsgY<-*
TT t+d++gY
gi|9057828 2752 TTDTLDAEGY 2761
Cna_B: domain 1 of 1, from 2813 to 2857: score 15.3, E = 0.00036
CS -TT-EEEEEETTEEE E--TTSEEEEEEE....-SEEEEEEE
*->LeGAeftLldkdgnv......tTdenGkytftnLPKykppGdYtvkE
++G+++tL++ + + ++ ++ Td++G+y+ L + G Yt+ E
gi|9057828 2813 IPGVTITLYNRTPGNescqsiQTDADGNYSLAAL----EGGLYTIFE 2855
CS EE
tk<-*
t+
gi|9057828 2856 TA 2857
Pox_A30L_A26L: domain 1 of 1, from 2900 to 2919: score 0.4, E = 4.5
*->mAniinLWnGivPtvqDvnvA<-*
An i + n iv vqD n A
gi|9057828 2900 -ANQIVINNPIVASVQDQNFA 2919
Sipho_tail: domain 1 of 1, from 3012 to 3023: score 0.9, E = 1.7
*->asviFNGvdLSe<-*
++v+FN vd+++
gi|9057828 3012 FNVSFNQVDITD 3023
WD40: domain 2 of 2, from 3066 to 3089: score 1.0, E = 18
CS EEEEETTSSSEEEEEETTSEEEEEE
*->cvafspdsgpllasgSrDgtikiWd<-*
+va++p +++ rDgt+k +d
gi|9057828 3066 DVAINPL-NNVMYGVLRDGTVKRYD 3089
DUF1923: domain 1 of 1, from 3159 to 3173: score 1.1, E = 5.7
CS EEEEE-SSS-EEEEE
*->viAAnvGKEPKEitG<-*
++A +G EPK itG
gi|9057828 3159 IVAVPIGNEPKNITG 3173
DUF297: domain 1 of 1, from 3213 to 3230: score 0.2, E = 7.6
CS EEEE-SS--H HHH...HHHH
*->DYvddgakid.eniYTTtRar<-*
DY+ ++++ ++e i tR++
gi|9057828 3213 DYIVTSDDGGpEHI---TRNN 3230
MAP1B_neuraxin: domain 2 of 3, from 3257 to 3265: score 0.1, E = 51
*->TTrtPddsg<-*
+++tPdd++
gi|9057828 3257 IGSTPDDED 3265
Big_2: domain 1 of 1, from 3268 to 3296: score 1.9, E = 7
CS E....TTTEEEEE-SSS-EEEEEEETT.TEEEEEEE
*->sntnSgstGlVtalakGtatItatsgdgnksasvtv<-*
s ++ +V +a G a It+ + + n++ ++t+
gi|9057828 3268 S-----NQVRVFVNA-GAAEITVPFTN-NSGSEATI 3296
RNA_lig_T4_1: domain 1 of 1, from 3306 to 3315: score 0.6, E = 10
CS TT-HHHHHHH
*->ngehDDLkal<-*
ng +DDL+a+
gi|9057828 3306 NGFSDDLRAQ 3315
PilS: domain 2 of 2, from 3319 to 3334: score 1.2, E = 5.9
*->aDnGrtGtNTltfTsn<-*
++++ tG++Tlt+T
gi|9057828 3319 SAGETTGDKTLTWTGL 3334
tRNA-synt_1d: domain 1 of 1, from 3391 to 3403: score 0.9, E = 3.5
*->lssnrdtdydfDl<-*
+ss ++t+yd Dl
gi|9057828 3391 TSSANTTSYDLDL 3403
Vac_Fusion: domain 1 of 1, from 3475 to 3480: score 3.1, E = 0.44
*->IDvQTG<-*
+DvQTG
gi|9057828 3475 VDVQTG 3480
Autotransporter: domain 1 of 1, from 3541 to 3568: score 0.8, E = 7.6
CS EEEEEEEEEEE-- - -EEEEEEEEEEE
*->lgasleagydfkl.e.lrltPfaglqys<-*
lg s+++gy+++++ ++ + P +l y+
gi|9057828 3541 LGMSAGGGYTLPFdSdWAYDPTTQLIYA 3568
YL1_C: domain 1 of 1, from 3560 to 3576: score 6.7, E = 1.1
*->DPkTglpYanaeaFkvI<-*
DP T+l Ya+ +F v+
gi|9057828 3560 DPTTQLIYATEMEFGVL 3576
DUF1450: domain 1 of 1, from 3613 to 3621: score 1.0, E = 8.8
*->lfALVnGev<-*
l+ALV+Ge+
gi|9057828 3613 LYALVDGEY 3621
TSP_3: domain 6 of 6, from 3621 to 3633: score 2.4, E = 16
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
DsD++g+ D+
gi|9057828 3621 YDSDGNGIL--DTTG 3633
Ku_PK_bind: domain 1 of 1, from 3664 to 3672: score 4.0, E = 0.82
CS SS-HHHHHH
*->GsvNPaqDF<-*
G +NPa+DF
gi|9057828 3664 GCINPARDF 3672
MIP: domain 1 of 1, from 3664 to 3673: score 1.9, E = 1.7
CS -SSCHHHHHH
*->asMNPARSFG<-*
+++NPAR+FG
gi|9057828 3664 GCINPARDFG 3673
Germane: domain 1 of 1, from 3769 to 3796: score 1.5, E = 9.8
*->siVnTLtqfpgvdkVqilveGkplellg<-*
++ T+ + g + V + v+G +l ++
gi|9057828 3769 QVIATALPAAGTHAVDLVVDGAKLGTYS 3796
UPF0300: domain 1 of 1, from 3801 to 3816: score 3.6, E = 1.5
*->mrkelleDLslCekfe<-*
+r ++ ++++ C+kf+
gi|9057828 3801 LRFRFCKEANHCDKFN 3816
MNNL: domain 1 of 1, from 3855 to 3861: score 2.5, E = 5.7
*->ssGvFEL<-*
ssG+FEL
gi|9057828 3855 SSGNFEL 3861
Plasmodium_HRP: domain 1 of 1, from 3950 to 3962: score 1.1, E = 3.2
CS XXXXXXXXXXXX--
*->mvsFsKnKvLsAAv<-*
vsF Kn++Ls v
gi|9057828 3950 -VSFTKNQLLSRMV 3962
Osmo_CC: domain 1 of 1, from 3973 to 3993: score 1.7, E = 8.3
*->sDieEAkElLqehydniEqKi<-*
+D++ E L h+dn q i
gi|9057828 3973 GDVDPSGEFLYVHHDNWQQMI 3993
DUF1683: domain 1 of 1, from 3993 to 4012: score 2.6, E = 3.3
*->vrveLkNpTklvqEveanline<-*
+r++L N+T +++E+++++ +
gi|9057828 3993 IRIHLINRTFEIVEFDTAV--N 4012
DUF328: domain 1 of 1, from 4019 to 4032: score 1.3, E = 4.9
*->gFadldGYafdeelS<-*
+F +dG+ ++++l
gi|9057828 4019 AF-ASDGFLYNPDLP 4032
DUF1512: domain 1 of 1, from 4152 to 4159: score -1.6, E = 8.2
*->GNTVGVpq<-*
GN+ G+++
gi|9057828 4152 GNSNGIAD 4159
Methyltransf_6: domain 1 of 1, from 4188 to 4194: score 0.8, E = 7.2
CS ETTEEEE
*->DndGivV<-*
D+dG+vV
gi|9057828 4188 DEDGVVV 4194
CRAM_rpt: domain 1 of 1, from 4281 to 4295: score 3.2, E = 1.1
*->GDCnEtDDCditGDCn<-*
GDCnE DD + GD
gi|9057828 4281 GDCNEPDDVSL-GDIA 4295
Stap_Strp_toxin: domain 1 of 1, from 4324 to 4330: score 2.5, E = 4.8
CS SEEEEST
*->GGVTlhe<-*
GGVT h+
gi|9057828 4324 GGVTAHD 4330
MAP1B_neuraxin: domain 3 of 3, from 4365 to 4374: score 1.4, E = 18
*->TTrtPddsgY<-*
TTrt + ++Y
gi|9057828 4365 TTRTRGNGSY 4374
DUF2202: domain 1 of 1, from 4379 to 4394: score 1.1, E = 8
*->PQYiSesEfdEIvssp<-*
P+ i e+++d Iv s
gi|9057828 4379 PVEIAEEQVDLIVESQ 4394
TraG_N: domain 1 of 1, from 4464 to 4474: score 0.8, E = 5.3
*->leIYTvGggef<-*
+ +YT+G+++f
gi|9057828 4464 FKYYTLGSVDF 4474
Nup133_N: domain 1 of 1, from 4502 to 4543: score -0.6, E = 6.6
*->edessftvfsthplntytsppsfqsesdllkprLviPksgatatavt
+d+s++ ++ t+ l t+++ ++ + ++ r++iP++ + +
gi|9057828 4502 IDTSEAIINTTVSLTTFNETDN----DICIVSRIYIPENAPLN---- 4540
svF<-*
s+F
gi|9057828 4541 SIF 4543
DicB: domain 1 of 1, from 4523 to 4531: score 2.8, E = 1.7
*->NevcIlSmL<-*
N++cI+S++
gi|9057828 4523 NDICIVSRI 4531
ClpB_D2-small: domain 1 of 1, from 4563 to 4581: score 1.6, E = 5.3
CS S-TT-EEEEEE- .....SSSE
*->lkeGdtvrvdvd.dgeggelvf<-*
+k++dtv+v+ +++g +l++
gi|9057828 4563 VKDNDTVKVSFKgAG---QLTI 4581
PC_rep: domain 2 of 2, from 4595 to 4622: score 3.7, E = 3.5
*->GlihaGsgnedealelLlvpyllsdtsnevra<-*
G+ ++G +n+ +le+ ++ +++ s+++r+
gi|9057828 4595 GISNLGKPND--ILEYEI-QF-MNHGSDDIRS 4622
HisG_C: domain 1 of 1, from 4604 to 4613: score 2.1, E = 7.3
*->gILVlpIekc<-*
+IL+++I +
gi|9057828 4604 DILEYEIQFM 4613
DNA_pol_viral_C: domain 1 of 1, from 4649 to 4657: score -1.9, E = 7.2
*->gvlCsVFAD<-*
gv C+VFAD
gi|9057828 4649 GVTCQVFAD 4657
//